data_5PZP # _model_server_result.job_id kmHWNezGPEe61C6E3y_KNg _model_server_result.datetime_utc '2025-08-15 17:24:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":609}' # _entry.id 5PZP # _exptl.entry_id 5PZP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PZP _cell.length_a 65.2 _cell.length_b 90.7 _cell.length_c 234.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,S 1 1 B,L,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 R N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 289 n n C1 C2 GOL sing 290 n n C1 H11 GOL sing 291 n n C1 H12 GOL sing 292 n n O1 HO1 GOL sing 293 n n C2 O2 GOL sing 294 n n C2 C3 GOL sing 295 n n C2 H2 GOL sing 296 n n O2 HO2 GOL sing 297 n n C3 O3 GOL sing 298 n n C3 H31 GOL sing 299 n n C3 H32 GOL sing 300 n n O3 HO3 GOL sing 301 n n # _atom_sites.entry_id 5PZP _atom_sites.fract_transf_matrix[1][1] 0.015337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 23E A 1 601 601 23E 23E . D 3 8XJ A 1 602 602 8XJ LG1 . E 4 SO4 A 1 603 4 SO4 SO4 . F 4 SO4 A 1 604 6 SO4 SO4 . G 4 SO4 A 1 605 8 SO4 SO4 . H 4 SO4 A 1 606 12 SO4 SO4 . I 5 GOL A 1 607 21 GOL GOL . J 5 GOL A 1 608 22 GOL GOL . K 5 GOL A 1 609 23 GOL GOL . L 2 23E B 1 601 601 23E 23E . M 3 8XJ B 1 602 602 8XJ LG1 . N 4 SO4 B 1 603 5 SO4 SO4 . O 4 SO4 B 1 604 7 SO4 SO4 . P 4 SO4 B 1 605 9 SO4 SO4 . Q 4 SO4 B 1 606 11 SO4 SO4 . R 5 GOL B 1 607 24 GOL GOL . S 6 HOH A 1 701 1 HOH HOH . S 6 HOH A 2 702 4 HOH HOH . S 6 HOH A 3 703 6 HOH HOH . S 6 HOH A 4 704 2 HOH HOH . S 6 HOH A 5 705 7 HOH HOH . S 6 HOH A 6 706 5 HOH HOH . S 6 HOH A 7 707 10 HOH HOH . S 6 HOH A 8 708 8 HOH HOH . S 6 HOH A 9 709 3 HOH HOH . T 6 HOH B 1 701 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 17.496 19.668 -17.804 1 88.07 ? C1 GOL 609 A 1 HETATM 2 O O1 GOL . . . K 5 18.386 18.579 -18.027 1 87.04 ? O1 GOL 609 A 1 HETATM 3 C C2 GOL . . . K 5 16.269 19.575 -18.683 1 90.61 ? C2 GOL 609 A 1 HETATM 4 O O2 GOL . . . K 5 15.736 18.256 -18.62 1 91.29 ? O2 GOL 609 A 1 HETATM 5 C C3 GOL . . . K 5 15.208 20.542 -18.213 1 93.25 ? C3 GOL 609 A 1 HETATM 6 O O3 GOL . . . K 5 13.913 20.124 -18.644 1 95.43 ? O3 GOL 609 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #