data_5Q0S # _model_server_result.job_id nNQxzTrVLCy3J8a8RIlmTQ _model_server_result.datetime_utc '2024-12-04 19:09:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5q0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5Q0S # _exptl.entry_id 5Q0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.958 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(2-cyanophenyl)-2-cyclohexylacetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Q0S _cell.length_a 72.169 _cell.length_b 84.461 _cell.length_c 188.977 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Q0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C28 H23 Cl F2 N4 O' _chem_comp.formula_weight 504.958 _chem_comp.id 9LJ _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-N-(2-cyanophenyl)-2-cyclohexylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C33 9LJ doub 1 n y C32 C31 9LJ sing 2 n y C33 C34 9LJ sing 3 n y C31 C30 9LJ doub 4 n y C14 C13 9LJ doub 5 n y C14 C15 9LJ sing 6 n y C34 C29 9LJ doub 7 n y C30 C29 9LJ sing 8 n y C30 C35 9LJ sing 9 n n C13 C12 9LJ sing 10 n y CL18 C15 9LJ sing 11 n n C29 N22 9LJ sing 12 n n N11 C7 9LJ sing 13 n y N11 C10 9LJ doub 14 n y C35 N36 9LJ trip 15 n n C15 C16 9LJ doub 16 n y C4 C7 9LJ doub 17 n y C4 C1 9LJ sing 18 n y F5 C1 9LJ sing 19 n n C7 C8 9LJ sing 20 n y C12 C10 9LJ sing 21 n n C12 C17 9LJ doub 22 n y C10 N9 9LJ sing 23 n y N22 C21 9LJ sing 24 n n C1 C2 9LJ doub 25 n y C16 C17 9LJ sing 26 n y C8 N9 9LJ sing 27 n y C8 C3 9LJ doub 28 n y N9 C19 9LJ sing 29 n n C2 C3 9LJ sing 30 n y C2 F6 9LJ sing 31 n n C21 C19 9LJ sing 32 n n C21 O23 9LJ doub 33 n n C19 C20 9LJ sing 34 n n C20 C28 9LJ sing 35 n n C20 C24 9LJ sing 36 n n C28 C27 9LJ sing 37 n n C24 C25 9LJ sing 38 n n C27 C26 9LJ sing 39 n n C25 C26 9LJ sing 40 n n C4 H1 9LJ sing 41 n n C13 H2 9LJ sing 42 n n C17 H3 9LJ sing 43 n n C20 H4 9LJ sing 44 n n C24 H5 9LJ sing 45 n n C24 H6 9LJ sing 46 n n C26 H7 9LJ sing 47 n n C26 H8 9LJ sing 48 n n C28 H9 9LJ sing 49 n n C28 H10 9LJ sing 50 n n C3 H11 9LJ sing 51 n n C19 H12 9LJ sing 52 n n C25 H13 9LJ sing 53 n n C25 H14 9LJ sing 54 n n C27 H15 9LJ sing 55 n n C27 H16 9LJ sing 56 n n N22 H17 9LJ sing 57 n n C31 H18 9LJ sing 58 n n C32 H19 9LJ sing 59 n n C33 H20 9LJ sing 60 n n C34 H21 9LJ sing 61 n n C14 H22 9LJ sing 62 n n C16 H23 9LJ sing 63 n n # _atom_sites.entry_id 5Q0S _atom_sites.fract_transf_matrix[1][1] 0.013856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 9LJ A 1 501 501 9LJ 9LJ . F 3 9LJ C 1 501 501 9LJ 9LJ . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . G 4 HOH A 9 609 609 HOH HOH . G 4 HOH A 10 610 610 HOH HOH . G 4 HOH A 11 611 611 HOH HOH . G 4 HOH A 12 612 612 HOH HOH . G 4 HOH A 13 613 613 HOH HOH . G 4 HOH A 14 614 614 HOH HOH . G 4 HOH A 15 615 615 HOH HOH . G 4 HOH A 16 616 616 HOH HOH . G 4 HOH A 17 617 617 HOH HOH . G 4 HOH A 18 618 618 HOH HOH . G 4 HOH A 19 619 619 HOH HOH . G 4 HOH A 20 620 620 HOH HOH . G 4 HOH A 21 621 621 HOH HOH . G 4 HOH A 22 622 622 HOH HOH . G 4 HOH A 23 623 623 HOH HOH . G 4 HOH A 24 624 624 HOH HOH . G 4 HOH A 25 625 625 HOH HOH . G 4 HOH A 26 626 626 HOH HOH . G 4 HOH A 27 627 627 HOH HOH . G 4 HOH A 28 628 628 HOH HOH . G 4 HOH A 29 629 629 HOH HOH . G 4 HOH A 30 630 630 HOH HOH . G 4 HOH A 31 631 631 HOH HOH . G 4 HOH A 32 632 632 HOH HOH . G 4 HOH A 33 633 633 HOH HOH . G 4 HOH A 34 634 634 HOH HOH . G 4 HOH A 35 635 635 HOH HOH . G 4 HOH A 36 636 636 HOH HOH . G 4 HOH A 37 637 637 HOH HOH . G 4 HOH A 38 638 638 HOH HOH . G 4 HOH A 39 639 639 HOH HOH . G 4 HOH A 40 640 640 HOH HOH . G 4 HOH A 41 641 641 HOH HOH . G 4 HOH A 42 642 642 HOH HOH . G 4 HOH A 43 643 643 HOH HOH . G 4 HOH A 44 644 644 HOH HOH . G 4 HOH A 45 645 645 HOH HOH . G 4 HOH A 46 646 646 HOH HOH . G 4 HOH A 47 647 647 HOH HOH . G 4 HOH A 48 648 648 HOH HOH . G 4 HOH A 49 649 649 HOH HOH . G 4 HOH A 50 650 650 HOH HOH . G 4 HOH A 51 651 651 HOH HOH . G 4 HOH A 52 652 652 HOH HOH . G 4 HOH A 53 653 653 HOH HOH . G 4 HOH A 54 654 654 HOH HOH . G 4 HOH A 55 655 655 HOH HOH . G 4 HOH A 56 656 656 HOH HOH . G 4 HOH A 57 657 657 HOH HOH . G 4 HOH A 58 658 658 HOH HOH . G 4 HOH A 59 659 659 HOH HOH . G 4 HOH A 60 660 660 HOH HOH . G 4 HOH A 61 661 661 HOH HOH . G 4 HOH A 62 662 662 HOH HOH . G 4 HOH A 63 663 663 HOH HOH . G 4 HOH A 64 664 664 HOH HOH . G 4 HOH A 65 665 665 HOH HOH . G 4 HOH A 66 666 666 HOH HOH . G 4 HOH A 67 667 667 HOH HOH . G 4 HOH A 68 668 668 HOH HOH . G 4 HOH A 69 669 669 HOH HOH . G 4 HOH A 70 670 670 HOH HOH . G 4 HOH A 71 671 671 HOH HOH . G 4 HOH A 72 672 672 HOH HOH . G 4 HOH A 73 673 673 HOH HOH . G 4 HOH A 74 674 674 HOH HOH . G 4 HOH A 75 675 675 HOH HOH . G 4 HOH A 76 676 676 HOH HOH . G 4 HOH A 77 677 677 HOH HOH . G 4 HOH A 78 678 678 HOH HOH . G 4 HOH A 79 679 679 HOH HOH . G 4 HOH A 80 680 680 HOH HOH . G 4 HOH A 81 681 681 HOH HOH . G 4 HOH A 82 682 682 HOH HOH . G 4 HOH A 83 683 683 HOH HOH . G 4 HOH A 84 684 684 HOH HOH . G 4 HOH A 85 685 685 HOH HOH . G 4 HOH A 86 686 686 HOH HOH . G 4 HOH A 87 687 687 HOH HOH . G 4 HOH A 88 688 688 HOH HOH . H 4 HOH B 1 801 801 HOH HOH . H 4 HOH B 2 802 802 HOH HOH . H 4 HOH B 3 803 803 HOH HOH . H 4 HOH B 4 804 804 HOH HOH . H 4 HOH B 5 805 805 HOH HOH . H 4 HOH B 6 806 806 HOH HOH . H 4 HOH B 7 807 807 HOH HOH . H 4 HOH B 8 808 808 HOH HOH . I 4 HOH C 1 601 601 HOH HOH . I 4 HOH C 2 602 602 HOH HOH . I 4 HOH C 3 603 603 HOH HOH . I 4 HOH C 4 604 604 HOH HOH . I 4 HOH C 5 605 605 HOH HOH . I 4 HOH C 6 606 606 HOH HOH . I 4 HOH C 7 607 607 HOH HOH . I 4 HOH C 8 608 608 HOH HOH . I 4 HOH C 9 609 609 HOH HOH . I 4 HOH C 10 610 610 HOH HOH . I 4 HOH C 11 611 611 HOH HOH . I 4 HOH C 12 612 612 HOH HOH . I 4 HOH C 13 613 613 HOH HOH . I 4 HOH C 14 614 614 HOH HOH . I 4 HOH C 15 615 615 HOH HOH . I 4 HOH C 16 616 616 HOH HOH . I 4 HOH C 17 617 617 HOH HOH . I 4 HOH C 18 618 618 HOH HOH . I 4 HOH C 19 619 619 HOH HOH . I 4 HOH C 20 620 620 HOH HOH . I 4 HOH C 21 621 621 HOH HOH . I 4 HOH C 22 622 622 HOH HOH . I 4 HOH C 23 623 623 HOH HOH . I 4 HOH C 24 624 624 HOH HOH . I 4 HOH C 25 625 625 HOH HOH . I 4 HOH C 26 626 626 HOH HOH . I 4 HOH C 27 627 627 HOH HOH . I 4 HOH C 28 628 628 HOH HOH . I 4 HOH C 29 629 629 HOH HOH . I 4 HOH C 30 630 630 HOH HOH . I 4 HOH C 31 631 631 HOH HOH . I 4 HOH C 32 632 632 HOH HOH . I 4 HOH C 33 633 633 HOH HOH . I 4 HOH C 34 634 634 HOH HOH . I 4 HOH C 35 635 635 HOH HOH . I 4 HOH C 36 636 636 HOH HOH . I 4 HOH C 37 637 637 HOH HOH . I 4 HOH C 38 638 638 HOH HOH . I 4 HOH C 39 639 639 HOH HOH . I 4 HOH C 40 640 640 HOH HOH . I 4 HOH C 41 641 641 HOH HOH . I 4 HOH C 42 642 642 HOH HOH . I 4 HOH C 43 643 643 HOH HOH . I 4 HOH C 44 644 644 HOH HOH . I 4 HOH C 45 645 645 HOH HOH . I 4 HOH C 46 646 646 HOH HOH . I 4 HOH C 47 647 647 HOH HOH . I 4 HOH C 48 648 648 HOH HOH . I 4 HOH C 49 649 649 HOH HOH . I 4 HOH C 50 650 650 HOH HOH . I 4 HOH C 51 651 651 HOH HOH . I 4 HOH C 52 652 652 HOH HOH . I 4 HOH C 53 653 653 HOH HOH . I 4 HOH C 54 654 654 HOH HOH . I 4 HOH C 55 655 655 HOH HOH . I 4 HOH C 56 656 656 HOH HOH . I 4 HOH C 57 657 657 HOH HOH . I 4 HOH C 58 658 658 HOH HOH . I 4 HOH C 59 659 659 HOH HOH . I 4 HOH C 60 660 660 HOH HOH . I 4 HOH C 61 661 661 HOH HOH . I 4 HOH C 62 662 662 HOH HOH . I 4 HOH C 63 663 663 HOH HOH . I 4 HOH C 64 664 664 HOH HOH . I 4 HOH C 65 665 665 HOH HOH . I 4 HOH C 66 666 666 HOH HOH . I 4 HOH C 67 667 667 HOH HOH . I 4 HOH C 68 668 668 HOH HOH . I 4 HOH C 69 669 669 HOH HOH . I 4 HOH C 70 670 670 HOH HOH . I 4 HOH C 71 671 671 HOH HOH . I 4 HOH C 72 672 672 HOH HOH . I 4 HOH C 73 673 673 HOH HOH . I 4 HOH C 74 674 674 HOH HOH . I 4 HOH C 75 675 675 HOH HOH . I 4 HOH C 76 676 676 HOH HOH . I 4 HOH C 77 677 677 HOH HOH . I 4 HOH C 78 678 678 HOH HOH . I 4 HOH C 79 679 679 HOH HOH . I 4 HOH C 80 680 680 HOH HOH . I 4 HOH C 81 681 681 HOH HOH . I 4 HOH C 82 682 682 HOH HOH . I 4 HOH C 83 683 683 HOH HOH . I 4 HOH C 84 684 684 HOH HOH . I 4 HOH C 85 685 685 HOH HOH . I 4 HOH C 86 686 686 HOH HOH . I 4 HOH C 87 687 687 HOH HOH . I 4 HOH C 88 688 688 HOH HOH . I 4 HOH C 89 689 689 HOH HOH . I 4 HOH C 90 690 690 HOH HOH . I 4 HOH C 91 691 691 HOH HOH . I 4 HOH C 92 692 692 HOH HOH . I 4 HOH C 93 693 693 HOH HOH . I 4 HOH C 94 694 694 HOH HOH . J 4 HOH D 1 801 801 HOH HOH . J 4 HOH D 2 802 802 HOH HOH . J 4 HOH D 3 803 803 HOH HOH . J 4 HOH D 4 804 804 HOH HOH . J 4 HOH D 5 805 805 HOH HOH . J 4 HOH D 6 806 806 HOH HOH . J 4 HOH D 7 807 807 HOH HOH . J 4 HOH D 8 808 808 HOH HOH . J 4 HOH D 9 809 809 HOH HOH . J 4 HOH D 10 810 810 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9LJ . . . E 3 11.01 26.658 2.475 1 35.73 ? C4 9LJ 501 A 1 HETATM 2 C C7 9LJ . . . E 3 12.102 25.869 2.84 1 34.42 ? C7 9LJ 501 A 1 HETATM 3 C C8 9LJ . . . E 3 11.945 24.879 3.809 1 35.51 ? C8 9LJ 501 A 1 HETATM 4 C C10 9LJ . . . E 3 14.043 24.945 3.05 1 37.75 ? C10 9LJ 501 A 1 HETATM 5 C C13 9LJ . . . E 3 15.799 23.478 2.131 1 37.65 ? C13 9LJ 501 A 1 HETATM 6 C C15 9LJ . . . E 3 18.12 23.89 2.474 1 40.34 ? C15 9LJ 501 A 1 HETATM 7 C C17 9LJ . . . E 3 16.499 25.384 3.407 1 39.78 ? C17 9LJ 501 A 1 HETATM 8 C C20 9LJ . . . E 3 13.533 23.489 6.323 1 36.68 ? C20 9LJ 501 A 1 HETATM 9 C C21 9LJ . . . E 3 12.864 21.843 4.391 1 36.78 ? C21 9LJ 501 A 1 HETATM 10 C C24 9LJ . . . E 3 14.401 22.529 7.148 1 33.85 ? C24 9LJ 501 A 1 HETATM 11 C C26 9LJ . . . E 3 14.781 24.275 8.917 1 34.86 ? C26 9LJ 501 A 1 HETATM 12 C C28 9LJ . . . E 3 13.958 24.947 6.62 1 37.69 ? C28 9LJ 501 A 1 HETATM 13 C C1 9LJ . . . E 3 9.803 26.412 3.105 1 38.25 ? C1 9LJ 501 A 1 HETATM 14 C C2 9LJ . . . E 3 9.667 25.421 4.071 1 39.06 ? C2 9LJ 501 A 1 HETATM 15 C C3 9LJ . . . E 3 10.729 24.628 4.447 1 36.94 ? C3 9LJ 501 A 1 HETATM 16 N N11 9LJ . . . E 3 13.421 25.894 2.375 1 36.44 ? N11 9LJ 501 A 1 HETATM 17 N N9 9LJ . . . E 3 13.213 24.293 3.941 1 36.54 ? N9 9LJ 501 A 1 HETATM 18 C C19 9LJ . . . E 3 13.621 23.17 4.822 1 36.44 ? C19 9LJ 501 A 1 HETATM 19 C C25 9LJ . . . E 3 14.35 22.848 8.642 1 33.72 ? C25 9LJ 501 A 1 HETATM 20 C C27 9LJ . . . E 3 13.933 25.265 8.128 1 35.74 ? C27 9LJ 501 A 1 HETATM 21 O O23 9LJ . . . E 3 12.601 20.96 5.201 1 41.2 ? O23 9LJ 501 A 1 HETATM 22 N N22 9LJ . . . E 3 12.548 21.788 3.074 1 33.34 ? N22 9LJ 501 A 1 HETATM 23 C C29 9LJ . . . E 3 11.876 20.762 2.354 1 34.39 ? C29 9LJ 501 A 1 HETATM 24 C C30 9LJ . . . E 3 12.586 19.588 2.007 1 34.82 ? C30 9LJ 501 A 1 HETATM 25 C C31 9LJ . . . E 3 11.954 18.565 1.299 1 31.75 ? C31 9LJ 501 A 1 HETATM 26 C C32 9LJ . . . E 3 10.624 18.693 0.932 1 32.46 ? C32 9LJ 501 A 1 HETATM 27 C C33 9LJ . . . E 3 9.917 19.834 1.262 1 34.53 ? C33 9LJ 501 A 1 HETATM 28 C C34 9LJ . . . E 3 10.532 20.874 1.97 1 35.99 ? C34 9LJ 501 A 1 HETATM 29 C C35 9LJ . . . E 3 13.966 19.441 2.385 1 41.24 ? C35 9LJ 501 A 1 HETATM 30 N N36 9LJ . . . E 3 15.06 19.359 2.701 1 45.18 ? N36 9LJ 501 A 1 HETATM 31 C C12 9LJ . . . E 3 15.469 24.615 2.867 1 38.1 ? C12 9LJ 501 A 1 HETATM 32 C C14 9LJ . . . E 3 17.121 23.114 1.934 1 37.89 ? C14 9LJ 501 A 1 HETATM 33 C C16 9LJ . . . E 3 17.829 25.025 3.21 1 41.14 ? C16 9LJ 501 A 1 HETATM 34 CL CL18 9LJ . . . E 3 19.784 23.427 2.224 1 43.91 ? CL18 9LJ 501 A 1 HETATM 35 F F6 9LJ . . . E 3 8.46 25.233 4.652 1 42.21 ? F6 9LJ 501 A 1 HETATM 36 F F5 9LJ . . . E 3 8.727 27.151 2.776 1 39.97 ? F5 9LJ 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 36 #