data_5Q0Z # _model_server_result.job_id 7N8bGbHmfOvAxKm7KAwmJQ _model_server_result.datetime_utc '2025-08-05 05:02:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5q0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 5Q0Z # _exptl.entry_id 5Q0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.456 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (5S)-3-(3,4-difluorobenzene-1-carbonyl)-1,1-dimethyl-1,2,3,4,5,6-hexahydroazepino[4,5-b]indole-5-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Q0Z _cell.length_a 71.52 _cell.length_b 83.55 _cell.length_c 188.91 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Q0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 193 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 436 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 193 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 436 _struct_conn.ptnr2_symmetry 4_565 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.961 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H24 F2 N2 O3' _chem_comp.formula_weight 426.456 _chem_comp.id 9M1 _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (5S)-3-(3,4-difluorobenzene-1-carbonyl)-1,1-dimethyl-1,2,3,4,5,6-hexahydroazepino[4,5-b]indole-5-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C28 9M1 sing 1 n n C28 O22 9M1 sing 2 n n O22 C11 9M1 sing 3 n n C12 N3 9M1 sing 4 n n C12 C7 9M1 sing 5 n n C25 C7 9M1 sing 6 n n N3 C6 9M1 sing 7 n n N3 C8 9M1 sing 8 n n C11 C2 9M1 sing 9 n n C11 O18 9M1 doub 10 n n C6 C2 9M1 sing 11 n n O16 C8 9M1 doub 12 n n F21 C15 9M1 sing 13 n n C2 C1 9M1 sing 14 n n C14 C15 9M1 doub 15 n y C14 C13 9M1 sing 16 n y C8 C13 9M1 sing 17 n n C7 C4 9M1 sing 18 n n C7 C24 9M1 sing 19 n n C15 C17 9M1 sing 20 n y C13 C19 9M1 doub 21 n y C1 C4 9M1 doub 22 n y C1 N5 9M1 sing 23 n y C4 C9 9M1 sing 24 n y N5 C10 9M1 sing 25 n y C17 F23 9M1 sing 26 n n C17 C20 9M1 doub 27 n y C19 C20 9M1 sing 28 n y C9 C10 9M1 doub 29 n y C9 C26 9M1 sing 30 n y C10 C27 9M1 sing 31 n y C26 C29 9M1 doub 32 n y C27 C30 9M1 doub 33 n y C29 C30 9M1 sing 34 n y C6 H1 9M1 sing 35 n n C6 H2 9M1 sing 36 n n C20 H3 9M1 sing 37 n n C24 H4 9M1 sing 38 n n C24 H5 9M1 sing 39 n n C24 H6 9M1 sing 40 n n C26 H7 9M1 sing 41 n n C28 H8 9M1 sing 42 n n C28 H9 9M1 sing 43 n n C31 H10 9M1 sing 44 n n C31 H11 9M1 sing 45 n n C31 H12 9M1 sing 46 n n C2 H13 9M1 sing 47 n n C12 H14 9M1 sing 48 n n C12 H15 9M1 sing 49 n n C25 H16 9M1 sing 50 n n C25 H17 9M1 sing 51 n n C25 H18 9M1 sing 52 n n N5 H19 9M1 sing 53 n n C27 H20 9M1 sing 54 n n C30 H21 9M1 sing 55 n n C29 H22 9M1 sing 56 n n C19 H23 9M1 sing 57 n n C14 H24 9M1 sing 58 n n # _atom_sites.entry_id 5Q0Z _atom_sites.fract_transf_matrix[1][1] 0.013982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 9M1 A 1 500 500 9M1 9M1 . F 3 9M1 C 1 500 500 9M1 9M1 . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . G 4 HOH A 9 609 609 HOH HOH . G 4 HOH A 10 610 610 HOH HOH . G 4 HOH A 11 611 611 HOH HOH . G 4 HOH A 12 612 612 HOH HOH . G 4 HOH A 13 613 613 HOH HOH . G 4 HOH A 14 614 614 HOH HOH . G 4 HOH A 15 615 615 HOH HOH . G 4 HOH A 16 616 616 HOH HOH . G 4 HOH A 17 617 617 HOH HOH . G 4 HOH A 18 618 618 HOH HOH . G 4 HOH A 19 619 619 HOH HOH . G 4 HOH A 20 620 620 HOH HOH . G 4 HOH A 21 621 621 HOH HOH . G 4 HOH A 22 622 622 HOH HOH . G 4 HOH A 23 623 623 HOH HOH . G 4 HOH A 24 624 624 HOH HOH . G 4 HOH A 25 625 625 HOH HOH . G 4 HOH A 26 626 626 HOH HOH . G 4 HOH A 27 627 627 HOH HOH . G 4 HOH A 28 628 628 HOH HOH . G 4 HOH A 29 629 629 HOH HOH . G 4 HOH A 30 630 630 HOH HOH . G 4 HOH A 31 631 631 HOH HOH . G 4 HOH A 32 632 632 HOH HOH . G 4 HOH A 33 633 633 HOH HOH . G 4 HOH A 34 634 634 HOH HOH . G 4 HOH A 35 635 635 HOH HOH . G 4 HOH A 36 636 636 HOH HOH . G 4 HOH A 37 637 637 HOH HOH . G 4 HOH A 38 638 638 HOH HOH . G 4 HOH A 39 639 639 HOH HOH . G 4 HOH A 40 640 640 HOH HOH . G 4 HOH A 41 641 641 HOH HOH . G 4 HOH A 42 642 642 HOH HOH . G 4 HOH A 43 643 643 HOH HOH . G 4 HOH A 44 644 644 HOH HOH . G 4 HOH A 45 645 645 HOH HOH . G 4 HOH A 46 646 646 HOH HOH . G 4 HOH A 47 647 647 HOH HOH . G 4 HOH A 48 648 648 HOH HOH . G 4 HOH A 49 649 649 HOH HOH . G 4 HOH A 50 650 650 HOH HOH . G 4 HOH A 51 651 651 HOH HOH . G 4 HOH A 52 652 652 HOH HOH . G 4 HOH A 53 653 653 HOH HOH . G 4 HOH A 54 654 654 HOH HOH . G 4 HOH A 55 655 655 HOH HOH . G 4 HOH A 56 656 656 HOH HOH . G 4 HOH A 57 657 657 HOH HOH . G 4 HOH A 58 658 658 HOH HOH . G 4 HOH A 59 659 659 HOH HOH . G 4 HOH A 60 660 660 HOH HOH . G 4 HOH A 61 661 661 HOH HOH . G 4 HOH A 62 662 662 HOH HOH . G 4 HOH A 63 663 663 HOH HOH . G 4 HOH A 64 664 664 HOH HOH . G 4 HOH A 65 665 665 HOH HOH . G 4 HOH A 66 666 666 HOH HOH . G 4 HOH A 67 667 667 HOH HOH . G 4 HOH A 68 668 668 HOH HOH . G 4 HOH A 69 669 669 HOH HOH . G 4 HOH A 70 670 670 HOH HOH . G 4 HOH A 71 671 671 HOH HOH . G 4 HOH A 72 672 672 HOH HOH . G 4 HOH A 73 673 673 HOH HOH . H 4 HOH B 1 801 801 HOH HOH . H 4 HOH B 2 802 802 HOH HOH . H 4 HOH B 3 803 803 HOH HOH . H 4 HOH B 4 804 804 HOH HOH . I 4 HOH C 1 601 601 HOH HOH . I 4 HOH C 2 602 602 HOH HOH . I 4 HOH C 3 603 603 HOH HOH . I 4 HOH C 4 604 604 HOH HOH . I 4 HOH C 5 605 605 HOH HOH . I 4 HOH C 6 606 606 HOH HOH . I 4 HOH C 7 607 607 HOH HOH . I 4 HOH C 8 608 608 HOH HOH . I 4 HOH C 9 609 609 HOH HOH . I 4 HOH C 10 610 610 HOH HOH . I 4 HOH C 11 611 611 HOH HOH . I 4 HOH C 12 612 612 HOH HOH . I 4 HOH C 13 613 613 HOH HOH . I 4 HOH C 14 614 614 HOH HOH . I 4 HOH C 15 615 615 HOH HOH . I 4 HOH C 16 616 616 HOH HOH . I 4 HOH C 17 617 617 HOH HOH . I 4 HOH C 18 618 618 HOH HOH . I 4 HOH C 19 619 619 HOH HOH . I 4 HOH C 20 620 620 HOH HOH . I 4 HOH C 21 621 621 HOH HOH . I 4 HOH C 22 622 622 HOH HOH . I 4 HOH C 23 623 623 HOH HOH . I 4 HOH C 24 624 624 HOH HOH . I 4 HOH C 25 625 625 HOH HOH . I 4 HOH C 26 626 626 HOH HOH . I 4 HOH C 27 627 627 HOH HOH . I 4 HOH C 28 628 628 HOH HOH . I 4 HOH C 29 629 629 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 9M1 . . . E 3 13.541 24.055 1.937 1 55.91 ? N3 9M1 500 A 1 HETATM 2 C C4 9M1 . . . E 3 16.04 22.473 3.038 1 54.23 ? C4 9M1 500 A 1 HETATM 3 C C6 9M1 . . . E 3 12.998 22.746 2.064 1 53.71 ? C6 9M1 500 A 1 HETATM 4 C C7 9M1 . . . E 3 16.025 23.965 2.52 1 55.19 ? C7 9M1 500 A 1 HETATM 5 C C8 9M1 . . . E 3 12.795 25.242 2.253 1 57.48 ? C8 9M1 500 A 1 HETATM 6 C C10 9M1 . . . E 3 16.659 20.441 4.038 1 53.39 ? C10 9M1 500 A 1 HETATM 7 C C13 9M1 . . . E 3 11.393 25.191 2.748 1 58.31 ? C13 9M1 500 A 1 HETATM 8 C C15 9M1 . . . E 3 9.157 26.016 2.658 1 58.73 ? C15 9M1 500 A 1 HETATM 9 C C17 9M1 . . . E 3 8.787 25.148 3.656 1 58.56 ? C17 9M1 500 A 1 HETATM 10 C C20 9M1 . . . E 3 9.701 24.289 4.221 1 58.36 ? C20 9M1 500 A 1 HETATM 11 C C24 9M1 . . . E 3 15.896 24.935 3.703 1 56.18 ? C24 9M1 500 A 1 HETATM 12 C C26 9M1 . . . E 3 18.355 22.142 4.326 1 56.68 ? C26 9M1 500 A 1 HETATM 13 C C28 9M1 . . . E 3 10.958 19.266 0.837 1 50.18 ? C28 9M1 500 A 1 HETATM 14 C C31 9M1 . . . E 3 9.787 19.723 0.071 1 48.91 ? C31 9M1 500 A 1 HETATM 15 O O22 9M1 . . . E 3 11.818 20.501 1.168 1 51.76 ? O22 9M1 500 A 1 HETATM 16 C C11 9M1 . . . E 3 12.829 20.342 2.048 1 51.6 ? C11 9M1 500 A 1 HETATM 17 O O18 9M1 . . . E 3 13.011 19.326 2.672 1 53.73 ? O18 9M1 500 A 1 HETATM 18 C C2 9M1 . . . E 3 13.677 21.573 2.147 1 52.26 ? C2 9M1 500 A 1 HETATM 19 C C12 9M1 . . . E 3 14.932 24.215 1.458 1 54.52 ? C12 9M1 500 A 1 HETATM 20 C C25 9M1 . . . E 3 17.341 24.289 1.801 1 55.75 ? C25 9M1 500 A 1 HETATM 21 C C1 9M1 . . . E 3 14.959 21.437 2.84 1 52.84 ? C1 9M1 500 A 1 HETATM 22 N N5 9M1 . . . E 3 15.4 20.247 3.467 1 53.08 ? N5 9M1 500 A 1 HETATM 23 C C27 9M1 . . . E 3 17.446 19.526 4.748 1 53.16 ? C27 9M1 500 A 1 HETATM 24 C C30 9M1 . . . E 3 18.681 19.932 5.239 1 54.91 ? C30 9M1 500 A 1 HETATM 25 C C29 9M1 . . . E 3 19.132 21.227 5.032 1 57.03 ? C29 9M1 500 A 1 HETATM 26 C C9 9M1 . . . E 3 17.113 21.764 3.823 1 55.22 ? C9 9M1 500 A 1 HETATM 27 O O16 9M1 . . . E 3 13.325 26.331 2.121 1 59.41 ? O16 9M1 500 A 1 HETATM 28 C C19 9M1 . . . E 3 11.009 24.315 3.767 1 58.28 ? C19 9M1 500 A 1 HETATM 29 F F23 9M1 . . . E 3 7.505 25.141 4.087 1 58.94 ? F23 9M1 500 A 1 HETATM 30 F F21 9M1 . . . E 3 8.231 26.844 2.127 1 59.19 ? F21 9M1 500 A 1 HETATM 31 C C14 9M1 . . . E 3 10.448 26.057 2.192 1 59.02 ? C14 9M1 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #