data_5Q16 # _model_server_result.job_id TOzI9Mm26zWcU3bCewacOQ _model_server_result.datetime_utc '2025-03-20 07:44:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5q16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5Q16 # _exptl.entry_id 5Q16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.059 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-{2-[(4-chloro-2-methylphenoxy)methyl]-6-fluoro-1H-benzimidazol-1-yl}-N,2-dicyclohexylacetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Q16 _cell.length_a 71.949 _cell.length_b 84.566 _cell.length_c 190.701 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Q16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C29 H35 Cl F N3 O2' _chem_comp.formula_weight 512.059 _chem_comp.id 9MS _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-{2-[(4-chloro-2-methylphenoxy)methyl]-6-fluoro-1H-benzimidazol-1-yl}-N,2-dicyclohexylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C5 9MS sing 1 n y N7 C9 9MS doub 2 n y C6 C5 9MS doub 3 n y C6 C1 9MS sing 4 n y C31 C28 9MS doub 5 n y C31 C34 9MS sing 6 n y C28 C14 9MS sing 7 n y CL35 C34 9MS sing 8 n n C33 C9 9MS sing 9 n n C33 O30 9MS sing 10 n n C5 C4 9MS sing 11 n y C34 C32 9MS doub 12 n y C19 C20 9MS sing 13 n n C19 C17 9MS sing 14 n n C9 N8 9MS sing 15 n y C1 C2 9MS doub 16 n y C20 C21 9MS sing 17 n n C14 O30 9MS sing 18 n n C14 C29 9MS doub 19 n y C21 C22 9MS sing 20 n n C32 C29 9MS sing 21 n y C29 C36 9MS sing 22 n n C17 C16 9MS sing 23 n n C4 N8 9MS sing 24 n y C4 C3 9MS doub 25 n y C16 C22 9MS sing 26 n n N8 C10 9MS sing 27 n n C2 C3 9MS sing 28 n y C2 F18 9MS sing 29 n n C22 N13 9MS sing 30 n n N13 C11 9MS sing 31 n n C10 C11 9MS sing 32 n n C10 C27 9MS sing 33 n n C11 O12 9MS doub 34 n n C26 C27 9MS sing 35 n n C26 C25 9MS sing 36 n n C27 C15 9MS sing 37 n n C15 C23 9MS sing 38 n n C25 C24 9MS sing 39 n n C24 C23 9MS sing 40 n n C6 H1 9MS sing 41 n n C10 H2 9MS sing 42 n n C15 H3 9MS sing 43 n n C15 H4 9MS sing 44 n n C17 H5 9MS sing 45 n n C17 H6 9MS sing 46 n n C20 H7 9MS sing 47 n n C20 H8 9MS sing 48 n n C21 H9 9MS sing 49 n n C21 H10 9MS sing 50 n n C22 H11 9MS sing 51 n n C24 H12 9MS sing 52 n n C24 H13 9MS sing 53 n n C26 H14 9MS sing 54 n n C26 H15 9MS sing 55 n n C28 H16 9MS sing 56 n n C1 H17 9MS sing 57 n n C3 H18 9MS sing 58 n n N13 H19 9MS sing 59 n n C16 H20 9MS sing 60 n n C16 H21 9MS sing 61 n n C19 H22 9MS sing 62 n n C19 H23 9MS sing 63 n n C27 H24 9MS sing 64 n n C23 H25 9MS sing 65 n n C23 H26 9MS sing 66 n n C25 H27 9MS sing 67 n n C25 H28 9MS sing 68 n n C33 H29 9MS sing 69 n n C33 H30 9MS sing 70 n n C31 H31 9MS sing 71 n n C32 H32 9MS sing 72 n n C36 H33 9MS sing 73 n n C36 H34 9MS sing 74 n n C36 H35 9MS sing 75 n n # _atom_sites.entry_id 5Q16 _atom_sites.fract_transf_matrix[1][1] 0.013899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 9MS A 1 501 501 9MS 9MS . F 3 9MS C 1 501 501 9MS 9MS . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . G 4 HOH A 9 609 609 HOH HOH . G 4 HOH A 10 610 610 HOH HOH . G 4 HOH A 11 611 611 HOH HOH . G 4 HOH A 12 612 612 HOH HOH . G 4 HOH A 13 613 613 HOH HOH . G 4 HOH A 14 614 614 HOH HOH . G 4 HOH A 15 615 615 HOH HOH . G 4 HOH A 16 616 616 HOH HOH . G 4 HOH A 17 617 617 HOH HOH . G 4 HOH A 18 618 618 HOH HOH . G 4 HOH A 19 619 619 HOH HOH . G 4 HOH A 20 620 620 HOH HOH . G 4 HOH A 21 621 621 HOH HOH . G 4 HOH A 22 622 622 HOH HOH . G 4 HOH A 23 623 623 HOH HOH . G 4 HOH A 24 624 624 HOH HOH . G 4 HOH A 25 625 625 HOH HOH . G 4 HOH A 26 626 626 HOH HOH . G 4 HOH A 27 627 627 HOH HOH . G 4 HOH A 28 628 628 HOH HOH . G 4 HOH A 29 629 629 HOH HOH . G 4 HOH A 30 630 630 HOH HOH . G 4 HOH A 31 631 631 HOH HOH . G 4 HOH A 32 632 632 HOH HOH . G 4 HOH A 33 633 633 HOH HOH . G 4 HOH A 34 634 634 HOH HOH . G 4 HOH A 35 635 635 HOH HOH . G 4 HOH A 36 636 636 HOH HOH . G 4 HOH A 37 637 637 HOH HOH . G 4 HOH A 38 638 638 HOH HOH . G 4 HOH A 39 639 639 HOH HOH . G 4 HOH A 40 640 640 HOH HOH . G 4 HOH A 41 641 641 HOH HOH . G 4 HOH A 42 642 642 HOH HOH . G 4 HOH A 43 643 643 HOH HOH . G 4 HOH A 44 644 644 HOH HOH . G 4 HOH A 45 645 645 HOH HOH . G 4 HOH A 46 646 646 HOH HOH . G 4 HOH A 47 647 647 HOH HOH . G 4 HOH A 48 648 648 HOH HOH . G 4 HOH A 49 649 649 HOH HOH . G 4 HOH A 50 650 650 HOH HOH . G 4 HOH A 51 651 651 HOH HOH . G 4 HOH A 52 652 652 HOH HOH . G 4 HOH A 53 653 653 HOH HOH . G 4 HOH A 54 654 654 HOH HOH . G 4 HOH A 55 655 655 HOH HOH . G 4 HOH A 56 656 656 HOH HOH . G 4 HOH A 57 657 657 HOH HOH . G 4 HOH A 58 658 658 HOH HOH . G 4 HOH A 59 659 659 HOH HOH . G 4 HOH A 60 660 660 HOH HOH . G 4 HOH A 61 661 661 HOH HOH . G 4 HOH A 62 662 662 HOH HOH . G 4 HOH A 63 663 663 HOH HOH . G 4 HOH A 64 664 664 HOH HOH . G 4 HOH A 65 665 665 HOH HOH . G 4 HOH A 66 666 666 HOH HOH . G 4 HOH A 67 667 667 HOH HOH . G 4 HOH A 68 668 668 HOH HOH . G 4 HOH A 69 669 669 HOH HOH . G 4 HOH A 70 670 670 HOH HOH . G 4 HOH A 71 671 671 HOH HOH . G 4 HOH A 72 672 672 HOH HOH . G 4 HOH A 73 673 673 HOH HOH . G 4 HOH A 74 674 674 HOH HOH . G 4 HOH A 75 675 675 HOH HOH . G 4 HOH A 76 676 676 HOH HOH . G 4 HOH A 77 677 677 HOH HOH . G 4 HOH A 78 678 678 HOH HOH . G 4 HOH A 79 679 679 HOH HOH . G 4 HOH A 80 680 680 HOH HOH . G 4 HOH A 81 681 681 HOH HOH . G 4 HOH A 82 682 682 HOH HOH . G 4 HOH A 83 683 683 HOH HOH . G 4 HOH A 84 684 684 HOH HOH . G 4 HOH A 85 685 685 HOH HOH . G 4 HOH A 86 686 686 HOH HOH . G 4 HOH A 87 687 687 HOH HOH . G 4 HOH A 88 688 688 HOH HOH . G 4 HOH A 89 689 689 HOH HOH . G 4 HOH A 90 690 690 HOH HOH . G 4 HOH A 91 691 691 HOH HOH . G 4 HOH A 92 692 692 HOH HOH . G 4 HOH A 93 693 693 HOH HOH . G 4 HOH A 94 694 694 HOH HOH . G 4 HOH A 95 695 695 HOH HOH . G 4 HOH A 96 696 696 HOH HOH . G 4 HOH A 97 697 697 HOH HOH . G 4 HOH A 98 698 698 HOH HOH . G 4 HOH A 99 699 699 HOH HOH . G 4 HOH A 100 700 700 HOH HOH . G 4 HOH A 101 701 701 HOH HOH . H 4 HOH B 1 801 801 HOH HOH . H 4 HOH B 2 802 802 HOH HOH . I 4 HOH C 1 601 601 HOH HOH . I 4 HOH C 2 602 602 HOH HOH . I 4 HOH C 3 603 603 HOH HOH . I 4 HOH C 4 604 604 HOH HOH . I 4 HOH C 5 605 605 HOH HOH . I 4 HOH C 6 606 606 HOH HOH . I 4 HOH C 7 607 607 HOH HOH . I 4 HOH C 8 608 608 HOH HOH . I 4 HOH C 9 609 609 HOH HOH . I 4 HOH C 10 610 610 HOH HOH . I 4 HOH C 11 611 611 HOH HOH . I 4 HOH C 12 612 612 HOH HOH . I 4 HOH C 13 613 613 HOH HOH . I 4 HOH C 14 614 614 HOH HOH . I 4 HOH C 15 615 615 HOH HOH . I 4 HOH C 16 616 616 HOH HOH . I 4 HOH C 17 617 617 HOH HOH . I 4 HOH C 18 618 618 HOH HOH . I 4 HOH C 19 619 619 HOH HOH . I 4 HOH C 20 620 620 HOH HOH . I 4 HOH C 21 621 621 HOH HOH . I 4 HOH C 22 622 622 HOH HOH . I 4 HOH C 23 623 623 HOH HOH . I 4 HOH C 24 624 624 HOH HOH . I 4 HOH C 25 625 625 HOH HOH . I 4 HOH C 26 626 626 HOH HOH . I 4 HOH C 27 627 627 HOH HOH . I 4 HOH C 28 628 628 HOH HOH . I 4 HOH C 29 629 629 HOH HOH . I 4 HOH C 30 630 630 HOH HOH . I 4 HOH C 31 631 631 HOH HOH . I 4 HOH C 32 632 632 HOH HOH . I 4 HOH C 33 633 633 HOH HOH . I 4 HOH C 34 634 634 HOH HOH . I 4 HOH C 35 635 635 HOH HOH . I 4 HOH C 36 636 636 HOH HOH . I 4 HOH C 37 637 637 HOH HOH . I 4 HOH C 38 638 638 HOH HOH . I 4 HOH C 39 639 639 HOH HOH . I 4 HOH C 40 640 640 HOH HOH . I 4 HOH C 41 641 641 HOH HOH . I 4 HOH C 42 642 642 HOH HOH . I 4 HOH C 43 643 643 HOH HOH . I 4 HOH C 44 644 644 HOH HOH . I 4 HOH C 45 645 645 HOH HOH . I 4 HOH C 46 646 646 HOH HOH . I 4 HOH C 47 647 647 HOH HOH . I 4 HOH C 48 648 648 HOH HOH . I 4 HOH C 49 649 649 HOH HOH . I 4 HOH C 50 650 650 HOH HOH . I 4 HOH C 51 651 651 HOH HOH . I 4 HOH C 52 652 652 HOH HOH . I 4 HOH C 53 653 653 HOH HOH . I 4 HOH C 54 654 654 HOH HOH . I 4 HOH C 55 655 655 HOH HOH . I 4 HOH C 56 656 656 HOH HOH . I 4 HOH C 57 657 657 HOH HOH . I 4 HOH C 58 658 658 HOH HOH . I 4 HOH C 59 659 659 HOH HOH . I 4 HOH C 60 660 660 HOH HOH . I 4 HOH C 61 661 661 HOH HOH . I 4 HOH C 62 662 662 HOH HOH . I 4 HOH C 63 663 663 HOH HOH . I 4 HOH C 64 664 664 HOH HOH . I 4 HOH C 65 665 665 HOH HOH . I 4 HOH C 66 666 666 HOH HOH . I 4 HOH C 67 667 667 HOH HOH . I 4 HOH C 68 668 668 HOH HOH . I 4 HOH C 69 669 669 HOH HOH . I 4 HOH C 70 670 670 HOH HOH . I 4 HOH C 71 671 671 HOH HOH . I 4 HOH C 72 672 672 HOH HOH . I 4 HOH C 73 673 673 HOH HOH . I 4 HOH C 74 674 674 HOH HOH . I 4 HOH C 75 675 675 HOH HOH . I 4 HOH C 76 676 676 HOH HOH . I 4 HOH C 77 677 677 HOH HOH . I 4 HOH C 78 678 678 HOH HOH . I 4 HOH C 79 679 679 HOH HOH . I 4 HOH C 80 680 680 HOH HOH . J 4 HOH D 1 801 801 HOH HOH . J 4 HOH D 2 802 802 HOH HOH . J 4 HOH D 3 803 803 HOH HOH . J 4 HOH D 4 804 804 HOH HOH . J 4 HOH D 5 805 805 HOH HOH . J 4 HOH D 6 806 806 HOH HOH . J 4 HOH D 7 807 807 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9MS . . . E 3 23.936 17.267 99.21 1 43.29 ? C4 9MS 501 A 1 HETATM 2 C C5 9MS . . . E 3 23.834 16.262 98.25 1 42.14 ? C5 9MS 501 A 1 HETATM 3 C C6 9MS . . . E 3 24.992 15.627 97.788 1 41.63 ? C6 9MS 501 A 1 HETATM 4 C C10 9MS . . . E 3 22.178 18.755 100.4 1 42.45 ? C10 9MS 501 A 1 HETATM 5 C C15 9MS . . . E 3 21.444 19.309 102.794 1 43.08 ? C15 9MS 501 A 1 HETATM 6 C C17 9MS . . . E 3 23.075 23.697 96.749 1 37.4 ? C17 9MS 501 A 1 HETATM 7 C C20 9MS . . . E 3 25.324 22.544 96.693 1 37.03 ? C20 9MS 501 A 1 HETATM 8 C C21 9MS . . . E 3 24.693 21.289 97.373 1 39.1 ? C21 9MS 501 A 1 HETATM 9 C C22 9MS . . . E 3 23.444 21.663 98.216 1 39.78 ? C22 9MS 501 A 1 HETATM 10 C C24 9MS . . . E 3 21.263 17.516 104.571 1 44.26 ? C24 9MS 501 A 1 HETATM 11 C C26 9MS . . . E 3 21.926 16.92 102.163 1 43.69 ? C26 9MS 501 A 1 HETATM 12 C C28 9MS . . . E 3 17.633 18.259 98.595 1 70.12 ? C28 9MS 501 A 1 HETATM 13 C C1 9MS . . . E 3 26.235 16.012 98.298 1 42.1 ? C1 9MS 501 A 1 HETATM 14 C C2 9MS . . . E 3 26.275 17.032 99.265 1 44.49 ? C2 9MS 501 A 1 HETATM 15 C C3 9MS . . . E 3 25.155 17.674 99.739 1 43.92 ? C3 9MS 501 A 1 HETATM 16 N N7 9MS . . . E 3 22.499 16.056 97.901 1 43.82 ? N7 9MS 501 A 1 HETATM 17 C C9 9MS . . . E 3 21.824 16.914 98.631 1 46.87 ? C9 9MS 501 A 1 HETATM 18 N N8 9MS . . . E 3 22.611 17.682 99.454 1 44.13 ? N8 9MS 501 A 1 HETATM 19 C C11 9MS . . . E 3 22.907 20.075 100.047 1 41.05 ? C11 9MS 501 A 1 HETATM 20 O O12 9MS . . . E 3 23.517 20.714 100.9 1 39.82 ? O12 9MS 501 A 1 HETATM 21 N N13 9MS . . . E 3 22.824 20.452 98.76 1 41.27 ? N13 9MS 501 A 1 HETATM 22 C C16 9MS . . . E 3 22.434 22.449 97.384 1 38.14 ? C16 9MS 501 A 1 HETATM 23 C C19 9MS . . . E 3 24.272 23.329 95.878 1 36.56 ? C19 9MS 501 A 1 HETATM 24 C C27 9MS . . . E 3 22.312 18.382 101.893 1 42.69 ? C27 9MS 501 A 1 HETATM 25 C C23 9MS . . . E 3 21.608 18.977 104.282 1 43.86 ? C23 9MS 501 A 1 HETATM 26 C C25 9MS . . . E 3 22.074 16.553 103.669 1 43.79 ? C25 9MS 501 A 1 HETATM 27 C C33 9MS . . . E 3 20.345 17.048 98.584 1 53.82 ? C33 9MS 501 A 1 HETATM 28 O O30 9MS . . . E 3 20.037 18.344 98.082 1 61.55 ? O30 9MS 501 A 1 HETATM 29 C C14 9MS . . . E 3 18.712 18.637 97.792 1 67.62 ? C14 9MS 501 A 1 HETATM 30 C C31 9MS . . . E 3 16.34 18.602 98.216 1 71.64 ? C31 9MS 501 A 1 HETATM 31 C C34 9MS . . . E 3 16.148 19.313 97.05 1 73.95 ? C34 9MS 501 A 1 HETATM 32 C C32 9MS . . . E 3 17.207 19.693 96.25 1 72.35 ? C32 9MS 501 A 1 HETATM 33 C C29 9MS . . . E 3 18.512 19.361 96.607 1 70.37 ? C29 9MS 501 A 1 HETATM 34 C C36 9MS . . . E 3 19.67 19.773 95.733 1 71.11 ? C36 9MS 501 A 1 HETATM 35 CL CL35 9MS . . . E 3 14.533 19.744 96.572 1 77.41 ? CL35 9MS 501 A 1 HETATM 36 F F18 9MS . . . E 3 27.481 17.408 99.765 1 45.29 ? F18 9MS 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #