data_5Q17 # _model_server_result.job_id Lu17Vu_X3aYC3jKbsS8zyw _model_server_result.datetime_utc '2024-12-26 23:42:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5q17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5Q17 # _exptl.entry_id 5Q17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 561.468 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4-({5-bromo-2-oxo-1'-[(thiophen-2-yl)sulfonyl]spiro[indole-3,4'-piperidin]-1(2H)-yl}methyl)benzoic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Q17 _cell.length_a 93.94 _cell.length_b 93.94 _cell.length_c 47.798 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Q17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H21 Br N2 O5 S2' _chem_comp.formula_weight 561.468 _chem_comp.id 9MV _chem_comp.mon_nstd_flag . _chem_comp.name "4-({5-bromo-2-oxo-1'-[(thiophen-2-yl)sulfonyl]spiro[indole-3,4'-piperidin]-1(2H)-yl}methyl)benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR34 C28 9MV sing 1 n n C30 C28 9MV doub 2 n y C30 C16 9MV sing 3 n y C28 C18 9MV sing 4 n y C16 C6 9MV doub 5 n y O31 C12 9MV doub 6 n n C18 C5 9MV doub 7 n y C26 C32 9MV doub 8 n y C26 C21 9MV sing 9 n y C6 C5 9MV sing 10 n y C6 N2 9MV sing 11 n n C32 C29 9MV sing 12 n y C12 C21 9MV sing 13 n n C12 O24 9MV sing 14 n n C21 C27 9MV doub 15 n y C5 C4 9MV sing 16 n n C29 C13 9MV sing 17 n n C29 C33 9MV doub 18 n y C13 N2 9MV sing 19 n n C27 C33 9MV sing 20 n y N2 C3 9MV sing 21 n n C4 C10 9MV sing 22 n n C4 C3 9MV sing 23 n n C4 C9 9MV sing 24 n n C10 C20 9MV sing 25 n n C3 O17 9MV doub 26 n n C9 C19 9MV sing 27 n n C20 N8 9MV sing 28 n n N8 C19 9MV sing 29 n n N8 S1 9MV sing 30 n n O14 S1 9MV doub 31 n n O15 S1 9MV doub 32 n n S1 C7 9MV sing 33 n n C7 C22 9MV doub 34 n y C7 S11 9MV sing 35 n y C22 C25 9MV sing 36 n y S11 C23 9MV sing 37 n y C25 C23 9MV doub 38 n y C10 H1 9MV sing 39 n n C10 H2 9MV sing 40 n n C13 H3 9MV sing 41 n n C13 H4 9MV sing 42 n n C20 H5 9MV sing 43 n n C20 H6 9MV sing 44 n n C22 H7 9MV sing 45 n n C26 H8 9MV sing 46 n n O24 H9 9MV sing 47 n n C32 H10 9MV sing 48 n n C19 H11 9MV sing 49 n n C19 H12 9MV sing 50 n n C9 H13 9MV sing 51 n n C9 H14 9MV sing 52 n n C25 H15 9MV sing 53 n n C23 H16 9MV sing 54 n n C18 H17 9MV sing 55 n n C30 H18 9MV sing 56 n n C16 H19 9MV sing 57 n n C33 H20 9MV sing 58 n n C27 H21 9MV sing 59 n n # _atom_sites.entry_id 5Q17 _atom_sites.fract_transf_matrix[1][1] 0.010645 _atom_sites.fract_transf_matrix[1][2] 0.006146 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 9MV A 1 501 501 9MV 9MV . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 623 623 HOH HOH . D 4 HOH A 24 624 624 HOH HOH . D 4 HOH A 25 625 625 HOH HOH . D 4 HOH A 26 626 626 HOH HOH . D 4 HOH A 27 627 627 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 629 HOH HOH . D 4 HOH A 30 630 630 HOH HOH . D 4 HOH A 31 631 631 HOH HOH . D 4 HOH A 32 632 632 HOH HOH . D 4 HOH A 33 633 633 HOH HOH . D 4 HOH A 34 634 634 HOH HOH . D 4 HOH A 35 635 635 HOH HOH . D 4 HOH A 36 636 636 HOH HOH . D 4 HOH A 37 637 637 HOH HOH . D 4 HOH A 38 638 638 HOH HOH . D 4 HOH A 39 639 639 HOH HOH . D 4 HOH A 40 640 640 HOH HOH . D 4 HOH A 41 641 641 HOH HOH . D 4 HOH A 42 642 642 HOH HOH . D 4 HOH A 43 643 643 HOH HOH . D 4 HOH A 44 644 644 HOH HOH . D 4 HOH A 45 645 645 HOH HOH . D 4 HOH A 46 646 646 HOH HOH . D 4 HOH A 47 647 647 HOH HOH . D 4 HOH A 48 648 648 HOH HOH . D 4 HOH A 49 649 649 HOH HOH . D 4 HOH A 50 650 650 HOH HOH . D 4 HOH A 51 651 651 HOH HOH . D 4 HOH A 52 652 652 HOH HOH . D 4 HOH A 53 653 653 HOH HOH . D 4 HOH A 54 654 654 HOH HOH . D 4 HOH A 55 655 655 HOH HOH . D 4 HOH A 56 656 656 HOH HOH . D 4 HOH A 57 657 657 HOH HOH . D 4 HOH A 58 658 658 HOH HOH . D 4 HOH A 59 659 659 HOH HOH . D 4 HOH A 60 660 660 HOH HOH . D 4 HOH A 61 661 661 HOH HOH . D 4 HOH A 62 662 662 HOH HOH . D 4 HOH A 63 663 663 HOH HOH . D 4 HOH A 64 664 664 HOH HOH . D 4 HOH A 65 665 665 HOH HOH . D 4 HOH A 66 666 666 HOH HOH . D 4 HOH A 67 667 667 HOH HOH . D 4 HOH A 68 668 668 HOH HOH . D 4 HOH A 69 669 669 HOH HOH . D 4 HOH A 70 670 670 HOH HOH . D 4 HOH A 71 671 671 HOH HOH . D 4 HOH A 72 672 672 HOH HOH . D 4 HOH A 73 673 673 HOH HOH . D 4 HOH A 74 674 674 HOH HOH . D 4 HOH A 75 675 675 HOH HOH . D 4 HOH A 76 676 676 HOH HOH . D 4 HOH A 77 677 677 HOH HOH . D 4 HOH A 78 678 678 HOH HOH . D 4 HOH A 79 679 679 HOH HOH . D 4 HOH A 80 680 680 HOH HOH . D 4 HOH A 81 681 681 HOH HOH . E 4 HOH B 1 801 801 HOH HOH . E 4 HOH B 2 802 802 HOH HOH . E 4 HOH B 3 803 803 HOH HOH . E 4 HOH B 4 804 804 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9MV . . . C 3 -14.656 52.109 0.811 1 95.69 ? C4 9MV 501 A 1 HETATM 2 C C5 9MV . . . C 3 -14.333 52.135 -0.659 1 99.24 ? C5 9MV 501 A 1 HETATM 3 C C6 9MV . . . C 3 -14.343 53.458 -1.103 1 99.06 ? C6 9MV 501 A 1 HETATM 4 C C7 9MV . . . C 3 -15.294 50.067 5.811 1 91.58 ? C7 9MV 501 A 1 HETATM 5 C C10 9MV . . . C 3 -16.038 51.431 1.006 1 93.9 ? C10 9MV 501 A 1 HETATM 6 C C13 9MV . . . C 3 -14.74 55.767 -0.108 1 94.57 ? C13 9MV 501 A 1 HETATM 7 C C20 9MV . . . C 3 -16.386 51.129 2.452 1 92.93 ? C20 9MV 501 A 1 HETATM 8 C C21 9MV . . . C 3 -11.166 58.109 -0.707 1 92.94 ? C21 9MV 501 A 1 HETATM 9 C C22 9MV . . . C 3 -14.126 49.876 6.501 1 91.58 ? C22 9MV 501 A 1 HETATM 10 C C26 9MV . . . C 3 -12.408 58.566 -1.139 1 92.88 ? C26 9MV 501 A 1 HETATM 11 C C28 9MV . . . C 3 -13.826 51.434 -2.881 1 108.31 ? C28 9MV 501 A 1 HETATM 12 O O31 9MV . . . C 3 -9.944 59.923 -1.638 1 92.99 ? O31 9MV 501 A 1 HETATM 13 C C12 9MV . . . C 3 -9.943 58.931 -0.92 1 93.3 ? C12 9MV 501 A 1 HETATM 14 O O24 9MV . . . C 3 -8.886 58.511 -0.281 1 93.68 ? O24 9MV 501 A 1 HETATM 15 C C32 9MV . . . C 3 -13.544 57.802 -0.94 1 93.12 ? C32 9MV 501 A 1 HETATM 16 C C29 9MV . . . C 3 -13.477 56.565 -0.312 1 93.47 ? C29 9MV 501 A 1 HETATM 17 N N2 9MV . . . C 3 -14.62 54.308 -0.031 1 96.28 ? N2 9MV 501 A 1 HETATM 18 C C3 9MV . . . C 3 -14.814 53.604 1.123 1 95.67 ? C3 9MV 501 A 1 HETATM 19 O O17 9MV . . . C 3 -15.078 54.087 2.21 1 95.44 ? O17 9MV 501 A 1 HETATM 20 N N8 9MV . . . C 3 -15.292 50.34 3.044 1 92.83 ? N8 9MV 501 A 1 HETATM 21 C C19 9MV . . . C 3 -14.024 51.096 3.112 1 93.25 ? C19 9MV 501 A 1 HETATM 22 C C9 9MV . . . C 3 -13.566 51.455 1.703 1 94.12 ? C9 9MV 501 A 1 HETATM 23 S S1 9MV . . . C 3 -15.658 49.346 4.276 1 92.24 ? S1 9MV 501 A 1 HETATM 24 O O14 9MV . . . C 3 -14.808 48.205 4.146 1 92.71 ? O14 9MV 501 A 1 HETATM 25 O O15 9MV . . . C 3 -17.075 49.154 4.252 1 91.54 ? O15 9MV 501 A 1 HETATM 26 C C25 9MV . . . C 3 -14.137 50.601 7.723 1 91.12 ? C25 9MV 501 A 1 HETATM 27 C C23 9MV . . . C 3 -15.276 51.295 7.914 1 90.95 ? C23 9MV 501 A 1 HETATM 28 S S11 9MV . . . C 3 -16.385 51.104 6.63 1 91.07 ? S11 9MV 501 A 1 HETATM 29 C C18 9MV . . . C 3 -14.076 51.105 -1.56 1 103.53 ? C18 9MV 501 A 1 HETATM 30 BR BR34 9MV . . . C 3 -13.47 50.039 -4.12 1 115.7 ? BR34 9MV 501 A 1 HETATM 31 C C30 9MV . . . C 3 -13.83 52.743 -3.328 1 105.2 ? C30 9MV 501 A 1 HETATM 32 C C16 9MV . . . C 3 -14.089 53.771 -2.435 1 102.02 ? C16 9MV 501 A 1 HETATM 33 C C33 9MV . . . C 3 -12.241 56.11 0.12 1 93.21 ? C33 9MV 501 A 1 HETATM 34 C C27 9MV . . . C 3 -11.098 56.869 -0.073 1 92.94 ? C27 9MV 501 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #