data_5Q1B # _model_server_result.job_id vTL-i5lvwuvZqRTMLNbZMQ _model_server_result.datetime_utc '2024-11-27 09:00:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5q1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5Q1B # _exptl.entry_id 5Q1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 572.625 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{[(2S)-2-cyclohexyl-2-{5,6-difluoro-2-[4-(1,3-thiazol-2-yl)phenyl]-1H-benzimidazol-1-yl}acetyl]amino}benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5Q1B _cell.length_a 72.09 _cell.length_b 83.58 _cell.length_c 187.99 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Q1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C31 H26 F2 N4 O3 S' _chem_comp.formula_weight 572.625 _chem_comp.id 9N7 _chem_comp.mon_nstd_flag . _chem_comp.name '4-{[(2S)-2-cyclohexyl-2-{5,6-difluoro-2-[4-(1,3-thiazol-2-yl)phenyl]-1H-benzimidazol-1-yl}acetyl]amino}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O34 C16 9N7 doub 1 n n C22 S17 9N7 sing 2 n y C22 C21 9N7 doub 3 n y S17 C9 9N7 sing 4 n y C30 C35 9N7 doub 5 n y C30 C20 9N7 sing 6 n y C16 C20 9N7 sing 7 n n C16 O23 9N7 sing 8 n n C21 N11 9N7 sing 9 n y C35 C29 9N7 sing 10 n y C9 N11 9N7 doub 11 n y C9 C18 9N7 sing 12 n n C26 C18 9N7 doub 13 n y C26 C24 9N7 sing 14 n y C20 C31 9N7 doub 15 n y C18 C27 9N7 sing 16 n y C24 C14 9N7 doub 17 n y N3 C5 9N7 sing 18 n y N3 C2 9N7 doub 19 n y C27 C25 9N7 doub 20 n y C14 C2 9N7 sing 21 n n C14 C25 9N7 sing 22 n y C29 N12 9N7 sing 23 n n C29 C36 9N7 doub 24 n y C10 C5 9N7 doub 25 n y C10 C15 9N7 sing 26 n y C5 C4 9N7 sing 27 n y C2 N1 9N7 sing 28 n y C31 C36 9N7 sing 29 n y N12 C6 9N7 sing 30 n n F33 C15 9N7 sing 31 n n C15 C13 9N7 doub 32 n y N1 C4 9N7 sing 33 n y N1 C7 9N7 sing 34 n n C4 C8 9N7 doub 35 n y C13 C8 9N7 sing 36 n y C13 F32 9N7 sing 37 n n C6 C7 9N7 sing 38 n n C6 O19 9N7 doub 39 n n C7 C28 9N7 sing 40 n n C28 C37 9N7 sing 41 n n C28 C38 9N7 sing 42 n n C37 C40 9N7 sing 43 n n C38 C39 9N7 sing 44 n n C40 C41 9N7 sing 45 n n C39 C41 9N7 sing 46 n n C7 H1 9N7 sing 47 n n C8 H2 9N7 sing 48 n n C10 H3 9N7 sing 49 n n N12 H4 9N7 sing 50 n n C21 H5 9N7 sing 51 n n C22 H6 9N7 sing 52 n n C24 H7 9N7 sing 53 n n C26 H8 9N7 sing 54 n n C28 H9 9N7 sing 55 n n C27 H10 9N7 sing 56 n n C25 H11 9N7 sing 57 n n C35 H12 9N7 sing 58 n n C30 H13 9N7 sing 59 n n O23 H14 9N7 sing 60 n n C31 H15 9N7 sing 61 n n C36 H16 9N7 sing 62 n n C37 H17 9N7 sing 63 n n C37 H18 9N7 sing 64 n n C40 H19 9N7 sing 65 n n C40 H20 9N7 sing 66 n n C41 H21 9N7 sing 67 n n C41 H22 9N7 sing 68 n n C39 H23 9N7 sing 69 n n C39 H24 9N7 sing 70 n n C38 H25 9N7 sing 71 n n C38 H26 9N7 sing 72 n n # _atom_sites.entry_id 5Q1B _atom_sites.fract_transf_matrix[1][1] 0.013872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 9N7 A 1 501 501 9N7 9N7 . F 3 9N7 C 1 501 501 9N7 9N7 . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . G 4 HOH A 9 609 609 HOH HOH . G 4 HOH A 10 610 610 HOH HOH . G 4 HOH A 11 611 611 HOH HOH . G 4 HOH A 12 612 612 HOH HOH . G 4 HOH A 13 613 613 HOH HOH . G 4 HOH A 14 614 614 HOH HOH . G 4 HOH A 15 615 615 HOH HOH . G 4 HOH A 16 616 616 HOH HOH . G 4 HOH A 17 617 617 HOH HOH . G 4 HOH A 18 618 618 HOH HOH . G 4 HOH A 19 619 619 HOH HOH . G 4 HOH A 20 620 620 HOH HOH . G 4 HOH A 21 621 621 HOH HOH . G 4 HOH A 22 622 622 HOH HOH . G 4 HOH A 23 623 623 HOH HOH . G 4 HOH A 24 624 624 HOH HOH . G 4 HOH A 25 625 625 HOH HOH . G 4 HOH A 26 626 626 HOH HOH . G 4 HOH A 27 627 627 HOH HOH . G 4 HOH A 28 628 628 HOH HOH . G 4 HOH A 29 629 629 HOH HOH . G 4 HOH A 30 630 630 HOH HOH . G 4 HOH A 31 631 631 HOH HOH . G 4 HOH A 32 632 632 HOH HOH . G 4 HOH A 33 633 633 HOH HOH . G 4 HOH A 34 634 634 HOH HOH . G 4 HOH A 35 635 635 HOH HOH . G 4 HOH A 36 636 636 HOH HOH . G 4 HOH A 37 637 637 HOH HOH . G 4 HOH A 38 638 638 HOH HOH . G 4 HOH A 39 639 639 HOH HOH . G 4 HOH A 40 640 640 HOH HOH . G 4 HOH A 41 641 641 HOH HOH . G 4 HOH A 42 642 642 HOH HOH . H 4 HOH B 1 801 801 HOH HOH . H 4 HOH B 2 802 802 HOH HOH . I 4 HOH C 1 601 601 HOH HOH . I 4 HOH C 2 602 602 HOH HOH . I 4 HOH C 3 603 603 HOH HOH . I 4 HOH C 4 604 604 HOH HOH . I 4 HOH C 5 605 605 HOH HOH . I 4 HOH C 6 606 606 HOH HOH . I 4 HOH C 7 607 607 HOH HOH . I 4 HOH C 8 608 608 HOH HOH . I 4 HOH C 9 609 609 HOH HOH . I 4 HOH C 10 610 610 HOH HOH . I 4 HOH C 11 611 611 HOH HOH . I 4 HOH C 12 612 612 HOH HOH . I 4 HOH C 13 613 613 HOH HOH . I 4 HOH C 14 614 614 HOH HOH . I 4 HOH C 15 615 615 HOH HOH . I 4 HOH C 16 616 616 HOH HOH . I 4 HOH C 17 617 617 HOH HOH . I 4 HOH C 18 618 618 HOH HOH . I 4 HOH C 19 619 619 HOH HOH . I 4 HOH C 20 620 620 HOH HOH . I 4 HOH C 21 621 621 HOH HOH . I 4 HOH C 22 622 622 HOH HOH . I 4 HOH C 23 623 623 HOH HOH . I 4 HOH C 24 624 624 HOH HOH . I 4 HOH C 25 625 625 HOH HOH . I 4 HOH C 26 626 626 HOH HOH . I 4 HOH C 27 627 627 HOH HOH . I 4 HOH C 28 628 628 HOH HOH . I 4 HOH C 29 629 629 HOH HOH . I 4 HOH C 30 630 630 HOH HOH . I 4 HOH C 31 631 631 HOH HOH . I 4 HOH C 32 632 632 HOH HOH . I 4 HOH C 33 633 633 HOH HOH . I 4 HOH C 34 634 634 HOH HOH . I 4 HOH C 35 635 635 HOH HOH . J 4 HOH D 1 801 801 HOH HOH . J 4 HOH D 2 802 802 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 9N7 . . . F 3 13.168 52.923 42.304 1 44.24 ? N1 9N7 501 C 1 HETATM 2 N N3 9N7 . . . F 3 12.043 53.081 40.361 1 39.46 ? N3 9N7 501 C 1 HETATM 3 C C4 9N7 . . . F 3 12.681 51.637 42.046 1 40.17 ? C4 9N7 501 C 1 HETATM 4 C C5 9N7 . . . F 3 11.992 51.741 40.842 1 40.24 ? C5 9N7 501 C 1 HETATM 5 C C6 9N7 . . . F 3 15.284 52.615 43.655 1 61.9 ? C6 9N7 501 C 1 HETATM 6 C C7 9N7 . . . F 3 13.942 53.385 43.487 1 53.32 ? C7 9N7 501 C 1 HETATM 7 C C8 9N7 . . . F 3 12.796 50.449 42.753 1 38.99 ? C8 9N7 501 C 1 HETATM 8 C C10 9N7 . . . F 3 11.389 50.605 40.292 1 41.43 ? C10 9N7 501 C 1 HETATM 9 N N12 9N7 . . . F 3 15.96 52.341 42.505 1 63.78 ? N12 9N7 501 C 1 HETATM 10 C C13 9N7 . . . F 3 12.195 49.349 42.199 1 42.97 ? C13 9N7 501 C 1 HETATM 11 C C15 9N7 . . . F 3 11.509 49.423 40.991 1 44.78 ? C15 9N7 501 C 1 HETATM 12 C C20 9N7 . . . F 3 19.713 50.347 42.234 1 63.11 ? C20 9N7 501 C 1 HETATM 13 C C21 9N7 . . . F 3 14.136 61.543 40.714 1 57.21 ? C21 9N7 501 C 1 HETATM 14 C C22 9N7 . . . F 3 15.463 61.438 40.54 1 58.72 ? C22 9N7 501 C 1 HETATM 15 C C24 9N7 . . . F 3 14.355 55.527 40.777 1 48.25 ? C24 9N7 501 C 1 HETATM 16 C C26 9N7 . . . F 3 14.738 56.858 40.664 1 49.19 ? C26 9N7 501 C 1 HETATM 17 C C28 9N7 . . . F 3 13.081 53.347 44.766 1 52.53 ? C28 9N7 501 C 1 HETATM 18 C C2 9N7 . . . F 3 12.738 53.738 41.265 1 42.02 ? C2 9N7 501 C 1 HETATM 19 F F33 9N7 . . . F 3 10.939 48.303 40.497 1 47.54 ? F33 9N7 501 C 1 HETATM 20 F F32 9N7 . . . F 3 12.279 48.158 42.838 1 43.95 ? F32 9N7 501 C 1 HETATM 21 C C14 9N7 . . . F 3 13.055 55.178 41.161 1 44.19 ? C14 9N7 501 C 1 HETATM 22 C C18 9N7 . . . F 3 13.834 57.883 40.929 1 51.69 ? C18 9N7 501 C 1 HETATM 23 C C9 9N7 . . . F 3 14.27 59.354 40.8 1 56.97 ? C9 9N7 501 C 1 HETATM 24 N N11 9N7 . . . F 3 13.448 60.366 40.864 1 56.36 ? N11 9N7 501 C 1 HETATM 25 S S17 9N7 . . . F 3 15.93 59.801 40.557 1 60.99 ? S17 9N7 501 C 1 HETATM 26 C C27 9N7 . . . F 3 12.53 57.542 41.314 1 51 ? C27 9N7 501 C 1 HETATM 27 C C25 9N7 . . . F 3 12.147 56.2 41.431 1 46.74 ? C25 9N7 501 C 1 HETATM 28 O O19 9N7 . . . F 3 15.683 52.292 44.772 1 65.31 ? O19 9N7 501 C 1 HETATM 29 C C29 9N7 . . . F 3 17.229 51.651 42.417 1 64.56 ? C29 9N7 501 C 1 HETATM 30 C C35 9N7 . . . F 3 17.956 51.671 41.22 1 66.09 ? C35 9N7 501 C 1 HETATM 31 C C30 9N7 . . . F 3 19.182 51.024 41.134 1 64.14 ? C30 9N7 501 C 1 HETATM 32 C C16 9N7 . . . F 3 21.058 49.636 42.148 1 64.07 ? C16 9N7 501 C 1 HETATM 33 O O23 9N7 . . . F 3 21.591 49.171 43.143 1 64.46 ? O23 9N7 501 C 1 HETATM 34 O O34 9N7 . . . F 3 21.592 49.564 40.958 1 64.08 ? O34 9N7 501 C 1 HETATM 35 C C31 9N7 . . . F 3 18.987 50.337 43.427 1 62.07 ? C31 9N7 501 C 1 HETATM 36 C C36 9N7 . . . F 3 17.763 50.98 43.52 1 62.47 ? C36 9N7 501 C 1 HETATM 37 C C37 9N7 . . . F 3 11.561 53.699 44.467 1 53.21 ? C37 9N7 501 C 1 HETATM 38 C C40 9N7 . . . F 3 10.706 53.699 45.741 1 54.7 ? C40 9N7 501 C 1 HETATM 39 C C41 9N7 . . . F 3 11.281 54.643 46.798 1 54.68 ? C41 9N7 501 C 1 HETATM 40 C C39 9N7 . . . F 3 12.74 54.281 47.127 1 54.7 ? C39 9N7 501 C 1 HETATM 41 C C38 9N7 . . . F 3 13.628 54.29 45.848 1 53.72 ? C38 9N7 501 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #