data_5Q1E # _model_server_result.job_id dr5SjCL9IkfJi9j-ORolxw _model_server_result.datetime_utc '2025-02-05 12:40:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5q1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5Q1E # _exptl.entry_id 5Q1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 585.496 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5Q1E _cell.length_a 93.305 _cell.length_b 93.305 _cell.length_c 47.898 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5Q1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H21 Br N6 O3 S2' _chem_comp.formula_weight 585.496 _chem_comp.id 9NG _chem_comp.mon_nstd_flag . _chem_comp.name "5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 9NG sing 1 n n C4 C3 9NG sing 2 n n C4 C14 9NG sing 3 n n C5 C6 9NG doub 4 n y C5 C23 9NG sing 5 n y C6 C20 9NG sing 6 n y C6 N2 9NG sing 7 n n C7 C26 9NG doub 8 n y C7 S1 9NG sing 9 n n C7 S16 9NG sing 10 n y C15 C24 9NG sing 11 n n C17 N2 9NG sing 12 n n C17 C32 9NG sing 13 n n C20 C33 9NG doub 14 n y C21 C30 9NG doub 15 n y C21 C29 9NG sing 16 n y C21 C12 9NG sing 17 n n C24 N9 9NG sing 18 n n C26 C28 9NG sing 19 n y C28 C27 9NG doub 20 n y BR36 C31 9NG sing 21 n n C31 C33 9NG sing 22 n y C31 C23 9NG doub 23 n y N2 C3 9NG sing 24 n n C32 C34 9NG doub 25 n y C32 C35 9NG sing 26 n y C34 C30 9NG sing 27 n y C29 C35 9NG doub 28 n y C12 N11 9NG sing 29 n y C12 N13 9NG doub 30 n y N11 N8 9NG sing 31 n y N8 N10 9NG doub 32 n y N10 N13 9NG sing 33 n y C3 O22 9NG doub 34 n n N9 C25 9NG sing 35 n n N9 S1 9NG sing 36 n n C25 C14 9NG sing 37 n n S1 O18 9NG doub 38 n n S1 O19 9NG doub 39 n n C27 S16 9NG sing 40 n y C15 H2 9NG sing 41 n n C15 H3 9NG sing 42 n n C17 H5 9NG sing 43 n n C17 H6 9NG sing 44 n n C20 H7 9NG sing 45 n n C24 H8 9NG sing 46 n n C24 H9 9NG sing 47 n n C26 H10 9NG sing 48 n n C28 H11 9NG sing 49 n n C33 H12 9NG sing 50 n n C34 H13 9NG sing 51 n n C30 H14 9NG sing 52 n n C29 H15 9NG sing 53 n n C35 H16 9NG sing 54 n n N11 H17 9NG sing 55 n n C25 H18 9NG sing 56 n n C25 H19 9NG sing 57 n n C14 H20 9NG sing 58 n n C14 H21 9NG sing 59 n n C27 H22 9NG sing 60 n n C23 H23 9NG sing 61 n n C15 C4 9NG sing 62 n n # _atom_sites.entry_id 5Q1E _atom_sites.fract_transf_matrix[1][1] 0.010718 _atom_sites.fract_transf_matrix[1][2] 0.006188 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 9NG A 1 501 501 9NG 9NG . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 623 623 HOH HOH . D 4 HOH A 24 624 624 HOH HOH . D 4 HOH A 25 625 625 HOH HOH . D 4 HOH A 26 626 626 HOH HOH . D 4 HOH A 27 627 627 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 629 HOH HOH . D 4 HOH A 30 630 630 HOH HOH . D 4 HOH A 31 631 631 HOH HOH . D 4 HOH A 32 632 632 HOH HOH . D 4 HOH A 33 633 633 HOH HOH . D 4 HOH A 34 634 634 HOH HOH . D 4 HOH A 35 635 635 HOH HOH . D 4 HOH A 36 636 636 HOH HOH . D 4 HOH A 37 637 637 HOH HOH . D 4 HOH A 38 638 638 HOH HOH . D 4 HOH A 39 639 639 HOH HOH . D 4 HOH A 40 640 640 HOH HOH . D 4 HOH A 41 641 641 HOH HOH . D 4 HOH A 42 642 642 HOH HOH . D 4 HOH A 43 643 644 HOH HOH . D 4 HOH A 44 644 643 HOH HOH . D 4 HOH A 45 645 645 HOH HOH . D 4 HOH A 46 646 646 HOH HOH . D 4 HOH A 47 647 647 HOH HOH . D 4 HOH A 48 648 648 HOH HOH . D 4 HOH A 49 649 649 HOH HOH . D 4 HOH A 50 650 650 HOH HOH . D 4 HOH A 51 651 651 HOH HOH . D 4 HOH A 52 652 652 HOH HOH . D 4 HOH A 53 653 653 HOH HOH . D 4 HOH A 54 654 654 HOH HOH . D 4 HOH A 55 655 655 HOH HOH . D 4 HOH A 56 656 656 HOH HOH . D 4 HOH A 57 657 657 HOH HOH . D 4 HOH A 58 658 658 HOH HOH . D 4 HOH A 59 659 659 HOH HOH . D 4 HOH A 60 660 660 HOH HOH . D 4 HOH A 61 661 661 HOH HOH . D 4 HOH A 62 662 662 HOH HOH . D 4 HOH A 63 663 663 HOH HOH . D 4 HOH A 64 664 664 HOH HOH . D 4 HOH A 65 665 665 HOH HOH . D 4 HOH A 66 666 666 HOH HOH . D 4 HOH A 67 667 667 HOH HOH . D 4 HOH A 68 668 668 HOH HOH . D 4 HOH A 69 669 669 HOH HOH . D 4 HOH A 70 670 670 HOH HOH . D 4 HOH A 71 671 671 HOH HOH . D 4 HOH A 72 672 672 HOH HOH . D 4 HOH A 73 673 673 HOH HOH . D 4 HOH A 74 674 674 HOH HOH . D 4 HOH A 75 675 675 HOH HOH . D 4 HOH A 76 676 676 HOH HOH . D 4 HOH A 77 677 677 HOH HOH . D 4 HOH A 78 678 678 HOH HOH . D 4 HOH A 79 679 679 HOH HOH . D 4 HOH A 80 680 680 HOH HOH . D 4 HOH A 81 681 681 HOH HOH . D 4 HOH A 82 682 682 HOH HOH . D 4 HOH A 83 683 683 HOH HOH . D 4 HOH A 84 684 684 HOH HOH . D 4 HOH A 85 685 685 HOH HOH . D 4 HOH A 86 686 686 HOH HOH . D 4 HOH A 87 687 687 HOH HOH . D 4 HOH A 88 688 688 HOH HOH . D 4 HOH A 89 689 689 HOH HOH . D 4 HOH A 90 690 690 HOH HOH . D 4 HOH A 91 691 691 HOH HOH . D 4 HOH A 92 692 692 HOH HOH . D 4 HOH A 93 693 693 HOH HOH . D 4 HOH A 94 694 694 HOH HOH . D 4 HOH A 95 695 695 HOH HOH . D 4 HOH A 96 696 696 HOH HOH . D 4 HOH A 97 697 697 HOH HOH . D 4 HOH A 98 698 698 HOH HOH . D 4 HOH A 99 699 699 HOH HOH . D 4 HOH A 100 700 700 HOH HOH . D 4 HOH A 101 701 701 HOH HOH . D 4 HOH A 102 702 702 HOH HOH . D 4 HOH A 103 703 703 HOH HOH . D 4 HOH A 104 704 704 HOH HOH . D 4 HOH A 105 705 705 HOH HOH . D 4 HOH A 106 706 706 HOH HOH . D 4 HOH A 107 707 707 HOH HOH . D 4 HOH A 108 708 708 HOH HOH . D 4 HOH A 109 709 709 HOH HOH . D 4 HOH A 110 710 710 HOH HOH . D 4 HOH A 111 711 711 HOH HOH . D 4 HOH A 112 712 712 HOH HOH . D 4 HOH A 113 713 713 HOH HOH . D 4 HOH A 114 714 714 HOH HOH . D 4 HOH A 115 715 715 HOH HOH . D 4 HOH A 116 716 716 HOH HOH . D 4 HOH A 117 717 717 HOH HOH . D 4 HOH A 118 718 718 HOH HOH . D 4 HOH A 119 719 719 HOH HOH . D 4 HOH A 120 720 720 HOH HOH . D 4 HOH A 121 721 721 HOH HOH . D 4 HOH A 122 722 722 HOH HOH . D 4 HOH A 123 723 723 HOH HOH . D 4 HOH A 124 724 724 HOH HOH . D 4 HOH A 125 725 725 HOH HOH . D 4 HOH A 126 726 726 HOH HOH . D 4 HOH A 127 727 727 HOH HOH . D 4 HOH A 128 728 728 HOH HOH . D 4 HOH A 129 729 729 HOH HOH . D 4 HOH A 130 730 730 HOH HOH . D 4 HOH A 131 731 731 HOH HOH . D 4 HOH A 132 732 732 HOH HOH . D 4 HOH A 133 733 733 HOH HOH . D 4 HOH A 134 734 734 HOH HOH . D 4 HOH A 135 735 735 HOH HOH . D 4 HOH A 136 736 736 HOH HOH . D 4 HOH A 137 737 737 HOH HOH . D 4 HOH A 138 738 738 HOH HOH . D 4 HOH A 139 739 739 HOH HOH . D 4 HOH A 140 740 740 HOH HOH . D 4 HOH A 141 741 741 HOH HOH . D 4 HOH A 142 742 742 HOH HOH . D 4 HOH A 143 743 743 HOH HOH . D 4 HOH A 144 744 744 HOH HOH . D 4 HOH A 145 745 745 HOH HOH . D 4 HOH A 146 746 746 HOH HOH . D 4 HOH A 147 747 747 HOH HOH . D 4 HOH A 148 748 748 HOH HOH . D 4 HOH A 149 749 749 HOH HOH . D 4 HOH A 150 750 750 HOH HOH . D 4 HOH A 151 751 751 HOH HOH . D 4 HOH A 152 752 752 HOH HOH . D 4 HOH A 153 753 753 HOH HOH . D 4 HOH A 154 754 754 HOH HOH . D 4 HOH A 155 755 755 HOH HOH . D 4 HOH A 156 756 756 HOH HOH . D 4 HOH A 157 757 757 HOH HOH . D 4 HOH A 158 758 758 HOH HOH . D 4 HOH A 159 759 759 HOH HOH . D 4 HOH A 160 760 760 HOH HOH . D 4 HOH A 161 761 761 HOH HOH . D 4 HOH A 162 762 762 HOH HOH . D 4 HOH A 163 763 763 HOH HOH . D 4 HOH A 164 764 764 HOH HOH . E 4 HOH B 1 801 801 HOH HOH . E 4 HOH B 2 802 802 HOH HOH . E 4 HOH B 3 803 803 HOH HOH . E 4 HOH B 4 804 804 HOH HOH . E 4 HOH B 5 805 805 HOH HOH . E 4 HOH B 6 806 806 HOH HOH . E 4 HOH B 7 807 807 HOH HOH . E 4 HOH B 8 808 808 HOH HOH . E 4 HOH B 9 809 809 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9NG . . . C 3 41.265 13.421 2.083 1 50.73 ? C4 9NG 501 A 1 HETATM 2 C C5 9NG . . . C 3 41.602 13.499 0.621 1 53.25 ? C5 9NG 501 A 1 HETATM 3 C C6 9NG . . . C 3 40.547 14.103 -0.061 1 51.64 ? C6 9NG 501 A 1 HETATM 4 C C7 9NG . . . C 3 42.591 11.959 7.246 1 66.98 ? C7 9NG 501 A 1 HETATM 5 C C15 9NG . . . C 3 40.999 11.781 2.452 1 51.29 ? C15 9NG 501 A 1 HETATM 6 C C17 9NG . . . C 3 38.255 15.081 0.486 1 44.13 ? C17 9NG 501 A 1 HETATM 7 C C20 9NG . . . C 3 40.594 14.28 -1.444 1 55.84 ? C20 9NG 501 A 1 HETATM 8 C C21 9NG . . . C 3 37.275 19.257 0.387 1 46.4 ? C21 9NG 501 A 1 HETATM 9 C C24 9NG . . . C 3 41.035 11.486 3.929 1 54.28 ? C24 9NG 501 A 1 HETATM 10 C C26 9NG . . . C 3 43.373 12.85 7.928 1 68.16 ? C26 9NG 501 A 1 HETATM 11 C C28 9NG . . . C 3 42.755 13.213 9.157 1 68.72 ? C28 9NG 501 A 1 HETATM 12 BR BR36 9NG . . . C 3 44.265 12.623 -2.409 1 79.53 ? BR36 9NG 501 A 1 HETATM 13 C C31 9NG . . . C 3 42.751 13.229 -1.452 1 65.78 ? C31 9NG 501 A 1 HETATM 14 C C33 9NG . . . C 3 41.712 13.83 -2.143 1 60.4 ? C33 9NG 501 A 1 HETATM 15 N N2 9NG . . . C 3 39.552 14.48 0.852 1 46.93 ? N2 9NG 501 A 1 HETATM 16 C C32 9NG . . . C 3 37.983 16.544 0.496 1 43.42 ? C32 9NG 501 A 1 HETATM 17 C C34 9NG . . . C 3 38.688 17.477 1.243 1 44.76 ? C34 9NG 501 A 1 HETATM 18 C C30 9NG . . . C 3 38.34 18.829 1.19 1 45.38 ? C30 9NG 501 A 1 HETATM 19 C C29 9NG . . . C 3 36.576 18.31 -0.345 1 45.95 ? C29 9NG 501 A 1 HETATM 20 C C35 9NG . . . C 3 36.924 16.985 -0.285 1 45.15 ? C35 9NG 501 A 1 HETATM 21 C C12 9NG . . . C 3 36.865 20.669 0.3 1 49.26 ? C12 9NG 501 A 1 HETATM 22 N N11 9NG . . . C 3 37.037 21.593 1.226 1 50.11 ? N11 9NG 501 A 1 HETATM 23 N N8 9NG . . . C 3 36.501 22.733 0.725 1 51.46 ? N8 9NG 501 A 1 HETATM 24 N N10 9NG . . . C 3 36.014 22.53 -0.457 1 52.07 ? N10 9NG 501 A 1 HETATM 25 N N13 9NG . . . C 3 36.233 21.232 -0.736 1 50.32 ? N13 9NG 501 A 1 HETATM 26 C C3 9NG . . . C 3 39.89 14.105 2.132 1 47.58 ? C3 9NG 501 A 1 HETATM 27 O O22 9NG . . . C 3 39.213 14.282 3.128 1 47.03 ? O22 9NG 501 A 1 HETATM 28 N N9 9NG . . . C 3 42.268 12.058 4.476 1 57.86 ? N9 9NG 501 A 1 HETATM 29 C C25 9NG . . . C 3 42.244 13.544 4.498 1 53.49 ? C25 9NG 501 A 1 HETATM 30 C C14 9NG . . . C 3 42.295 14.08 3.059 1 50.66 ? C14 9NG 501 A 1 HETATM 31 S S1 9NG . . . C 3 42.99 11.275 5.707 1 64.38 ? S1 9NG 501 A 1 HETATM 32 O O18 9NG . . . C 3 44.398 11.449 5.529 1 66.23 ? O18 9NG 501 A 1 HETATM 33 O O19 9NG . . . C 3 42.464 9.945 5.722 1 64.79 ? O19 9NG 501 A 1 HETATM 34 C C27 9NG . . . C 3 41.582 12.613 9.358 1 69.42 ? C27 9NG 501 A 1 HETATM 35 S S16 9NG . . . C 3 41.147 11.574 8.079 1 69.98 ? S16 9NG 501 A 1 HETATM 36 C C23 9NG . . . C 3 42.718 13.049 -0.079 1 58.57 ? C23 9NG 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 36 #