data_5QBJ # _model_server_result.job_id M5QAcVPwvlwf2cjzpVjb5Q _model_server_result.datetime_utc '2025-01-11 02:53:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5QBJ # _exptl.entry_id 5QBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 265.374 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(2-{[methyl(prop-2-yn-1-yl)amino]methyl}-1,3-thiazol-4-yl)piperidin-4-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.78 _cell.angle_gamma 90 _cell.entry_id 5QBJ _cell.length_a 45.065 _cell.length_b 72.905 _cell.length_c 52.263 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.045 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H19 N3 O S' _chem_comp.formula_weight 265.374 _chem_comp.id D8V _chem_comp.mon_nstd_flag . _chem_comp.name 4-(2-{[methyl(prop-2-yn-1-yl)amino]methyl}-1,3-thiazol-4-yl)piperidin-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 D8V sing 89 n n C9 C8 D8V sing 90 n n S C7 D8V sing 91 n y S C5 D8V sing 92 n y C10 N2 D8V sing 93 n n C7 C6 D8V doub 94 n y N2 C11 D8V sing 95 n n C5 C4 D8V sing 96 n n C5 N1 D8V doub 97 n y C4 N D8V sing 98 n n C6 N1 D8V sing 99 n y C6 C8 D8V sing 100 n n C8 C12 D8V sing 101 n n C8 O D8V sing 102 n n C1 C2 D8V sing 103 n n C1 N D8V sing 104 n n C12 C11 D8V sing 105 n n C2 C3 D8V trip 106 n n N C D8V sing 107 n n C4 H1 D8V sing 108 n n C4 H2 D8V sing 109 n n C7 H3 D8V sing 110 n n N2 H4 D8V sing 111 n n C9 H6 D8V sing 112 n n C9 H7 D8V sing 113 n n C10 H8 D8V sing 114 n n C10 H9 D8V sing 115 n n C11 H10 D8V sing 116 n n C11 H11 D8V sing 117 n n C12 H12 D8V sing 118 n n C12 H13 D8V sing 119 n n O H14 D8V sing 120 n n C H16 D8V sing 121 n n C H17 D8V sing 122 n n C H18 D8V sing 123 n n C1 H19 D8V sing 124 n n C1 H20 D8V sing 125 n n C3 H21 D8V sing 126 n n # _atom_sites.entry_id 5QBJ _atom_sites.fract_transf_matrix[1][1] 0.02219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007546 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 3 GOL GOL . D 2 GOL A 1 403 4 GOL GOL . E 3 ACT A 1 404 1 ACT ACT . F 4 D8V A 1 405 1 D8V XXX . G 5 HOH A 1 501 1894 HOH HOH . G 5 HOH A 2 502 2552 HOH HOH . G 5 HOH A 3 503 897 HOH HOH . G 5 HOH A 4 504 2331 HOH HOH . G 5 HOH A 5 505 995 HOH HOH . G 5 HOH A 6 506 1410 HOH HOH . G 5 HOH A 7 507 867 HOH HOH . G 5 HOH A 8 508 1369 HOH HOH . G 5 HOH A 9 509 1540 HOH HOH . G 5 HOH A 10 510 2102 HOH HOH . G 5 HOH A 11 511 1086 HOH HOH . G 5 HOH A 12 512 2540 HOH HOH . G 5 HOH A 13 513 905 HOH HOH . G 5 HOH A 14 514 955 HOH HOH . G 5 HOH A 15 515 686 HOH HOH . G 5 HOH A 16 516 826 HOH HOH . G 5 HOH A 17 517 1594 HOH HOH . G 5 HOH A 18 518 1547 HOH HOH . G 5 HOH A 19 519 1070 HOH HOH . G 5 HOH A 20 520 1010 HOH HOH . G 5 HOH A 21 521 1659 HOH HOH . G 5 HOH A 22 522 569 HOH HOH . G 5 HOH A 23 523 2095 HOH HOH . G 5 HOH A 24 524 1388 HOH HOH . G 5 HOH A 25 525 2216 HOH HOH . G 5 HOH A 26 526 1448 HOH HOH . G 5 HOH A 27 527 747 HOH HOH . G 5 HOH A 28 528 733 HOH HOH . G 5 HOH A 29 529 1019 HOH HOH . G 5 HOH A 30 530 2085 HOH HOH . G 5 HOH A 31 531 1417 HOH HOH . G 5 HOH A 32 532 2163 HOH HOH . G 5 HOH A 33 533 1244 HOH HOH . G 5 HOH A 34 534 2727 HOH HOH . G 5 HOH A 35 535 589 HOH HOH . G 5 HOH A 36 536 988 HOH HOH . G 5 HOH A 37 537 1651 HOH HOH . G 5 HOH A 38 538 1394 HOH HOH . G 5 HOH A 39 539 786 HOH HOH . G 5 HOH A 40 540 1111 HOH HOH . G 5 HOH A 41 541 1282 HOH HOH . G 5 HOH A 42 542 971 HOH HOH . G 5 HOH A 43 543 1401 HOH HOH . G 5 HOH A 44 544 638 HOH HOH . G 5 HOH A 45 545 1115 HOH HOH . G 5 HOH A 46 546 2283 HOH HOH . G 5 HOH A 47 547 804 HOH HOH . G 5 HOH A 48 548 1125 HOH HOH . G 5 HOH A 49 549 957 HOH HOH . G 5 HOH A 50 550 992 HOH HOH . G 5 HOH A 51 551 2167 HOH HOH . G 5 HOH A 52 552 2308 HOH HOH . G 5 HOH A 53 553 1769 HOH HOH . G 5 HOH A 54 554 2357 HOH HOH . G 5 HOH A 55 555 1081 HOH HOH . G 5 HOH A 56 556 1304 HOH HOH . G 5 HOH A 57 557 1167 HOH HOH . G 5 HOH A 58 558 2533 HOH HOH . G 5 HOH A 59 559 807 HOH HOH . G 5 HOH A 60 560 1764 HOH HOH . G 5 HOH A 61 561 1210 HOH HOH . G 5 HOH A 62 562 2459 HOH HOH . G 5 HOH A 63 563 2110 HOH HOH . G 5 HOH A 64 564 2698 HOH HOH . G 5 HOH A 65 565 1853 HOH HOH . G 5 HOH A 66 566 925 HOH HOH . G 5 HOH A 67 567 2679 HOH HOH . G 5 HOH A 68 568 690 HOH HOH . G 5 HOH A 69 569 775 HOH HOH . G 5 HOH A 70 570 896 HOH HOH . G 5 HOH A 71 571 1316 HOH HOH . G 5 HOH A 72 572 1236 HOH HOH . G 5 HOH A 73 573 1631 HOH HOH . G 5 HOH A 74 574 1593 HOH HOH . G 5 HOH A 75 575 835 HOH HOH . G 5 HOH A 76 576 1958 HOH HOH . G 5 HOH A 77 577 2093 HOH HOH . G 5 HOH A 78 578 612 HOH HOH . G 5 HOH A 79 579 1223 HOH HOH . G 5 HOH A 80 580 1014 HOH HOH . G 5 HOH A 81 581 2307 HOH HOH . G 5 HOH A 82 582 1092 HOH HOH . G 5 HOH A 83 583 1656 HOH HOH . G 5 HOH A 84 584 798 HOH HOH . G 5 HOH A 85 585 1820 HOH HOH . G 5 HOH A 86 586 1538 HOH HOH . G 5 HOH A 87 587 2657 HOH HOH . G 5 HOH A 88 588 588 HOH HOH . G 5 HOH A 89 589 1124 HOH HOH . G 5 HOH A 90 590 2162 HOH HOH . G 5 HOH A 91 591 2166 HOH HOH . G 5 HOH A 92 592 1475 HOH HOH . G 5 HOH A 93 593 744 HOH HOH . G 5 HOH A 94 594 2354 HOH HOH . G 5 HOH A 95 595 1627 HOH HOH . G 5 HOH A 96 596 2344 HOH HOH . G 5 HOH A 97 597 582 HOH HOH . G 5 HOH A 98 598 1180 HOH HOH . G 5 HOH A 99 599 738 HOH HOH . G 5 HOH A 100 600 1782 HOH HOH . G 5 HOH A 101 601 1515 HOH HOH . G 5 HOH A 102 602 978 HOH HOH . G 5 HOH A 103 603 1292 HOH HOH . G 5 HOH A 104 604 621 HOH HOH . G 5 HOH A 105 605 1384 HOH HOH . G 5 HOH A 106 606 1463 HOH HOH . G 5 HOH A 107 607 1107 HOH HOH . G 5 HOH A 108 608 760 HOH HOH . G 5 HOH A 109 609 1709 HOH HOH . G 5 HOH A 110 610 731 HOH HOH . G 5 HOH A 111 611 1757 HOH HOH . G 5 HOH A 112 612 1840 HOH HOH . G 5 HOH A 113 613 1246 HOH HOH . G 5 HOH A 114 614 1286 HOH HOH . G 5 HOH A 115 615 1290 HOH HOH . G 5 HOH A 116 616 1572 HOH HOH . G 5 HOH A 117 617 1237 HOH HOH . G 5 HOH A 118 618 2210 HOH HOH . G 5 HOH A 119 619 1207 HOH HOH . G 5 HOH A 120 620 1999 HOH HOH . G 5 HOH A 121 621 1149 HOH HOH . G 5 HOH A 122 622 1784 HOH HOH . G 5 HOH A 123 623 830 HOH HOH . G 5 HOH A 124 624 819 HOH HOH . G 5 HOH A 125 625 1776 HOH HOH . G 5 HOH A 126 626 1365 HOH HOH . G 5 HOH A 127 627 1038 HOH HOH . G 5 HOH A 128 628 2436 HOH HOH . G 5 HOH A 129 629 1731 HOH HOH . G 5 HOH A 130 630 1461 HOH HOH . G 5 HOH A 131 631 1226 HOH HOH . G 5 HOH A 132 632 2451 HOH HOH . G 5 HOH A 133 633 970 HOH HOH . G 5 HOH A 134 634 2660 HOH HOH . G 5 HOH A 135 635 932 HOH HOH . G 5 HOH A 136 636 770 HOH HOH . G 5 HOH A 137 637 1359 HOH HOH . G 5 HOH A 138 638 1718 HOH HOH . G 5 HOH A 139 639 959 HOH HOH . G 5 HOH A 140 640 2535 HOH HOH . G 5 HOH A 141 641 1460 HOH HOH . G 5 HOH A 142 642 938 HOH HOH . G 5 HOH A 143 643 1340 HOH HOH . G 5 HOH A 144 644 1555 HOH HOH . G 5 HOH A 145 645 677 HOH HOH . G 5 HOH A 146 646 1638 HOH HOH . G 5 HOH A 147 647 1851 HOH HOH . G 5 HOH A 148 648 2057 HOH HOH . G 5 HOH A 149 649 1832 HOH HOH . G 5 HOH A 150 650 1173 HOH HOH . G 5 HOH A 151 651 1906 HOH HOH . G 5 HOH A 152 652 748 HOH HOH . G 5 HOH A 153 653 1980 HOH HOH . G 5 HOH A 154 654 2483 HOH HOH . G 5 HOH A 155 655 629 HOH HOH . G 5 HOH A 156 656 948 HOH HOH . G 5 HOH A 157 657 1110 HOH HOH . G 5 HOH A 158 658 2159 HOH HOH . G 5 HOH A 159 659 1095 HOH HOH . G 5 HOH A 160 660 2060 HOH HOH . G 5 HOH A 161 661 813 HOH HOH . G 5 HOH A 162 662 2125 HOH HOH . G 5 HOH A 163 663 1637 HOH HOH . G 5 HOH A 164 664 1612 HOH HOH . G 5 HOH A 165 665 996 HOH HOH . G 5 HOH A 166 666 1805 HOH HOH . G 5 HOH A 167 667 881 HOH HOH . G 5 HOH A 168 668 2107 HOH HOH . G 5 HOH A 169 669 1699 HOH HOH . G 5 HOH A 170 670 2364 HOH HOH . G 5 HOH A 171 671 2520 HOH HOH . G 5 HOH A 172 672 1566 HOH HOH . G 5 HOH A 173 673 1792 HOH HOH . G 5 HOH A 174 674 1977 HOH HOH . G 5 HOH A 175 675 1689 HOH HOH . G 5 HOH A 176 676 1844 HOH HOH . G 5 HOH A 177 677 2625 HOH HOH . G 5 HOH A 178 678 1932 HOH HOH . G 5 HOH A 179 679 2137 HOH HOH . G 5 HOH A 180 680 2198 HOH HOH . G 5 HOH A 181 681 1239 HOH HOH . G 5 HOH A 182 682 852 HOH HOH . G 5 HOH A 183 683 1089 HOH HOH . G 5 HOH A 184 684 1535 HOH HOH . G 5 HOH A 185 685 1640 HOH HOH . G 5 HOH A 186 686 2611 HOH HOH . G 5 HOH A 187 687 678 HOH HOH . G 5 HOH A 188 688 1005 HOH HOH . G 5 HOH A 189 689 575 HOH HOH . G 5 HOH A 190 690 2688 HOH HOH . G 5 HOH A 191 691 1739 HOH HOH . G 5 HOH A 192 692 1562 HOH HOH . G 5 HOH A 193 693 1720 HOH HOH . G 5 HOH A 194 694 2115 HOH HOH . G 5 HOH A 195 695 2417 HOH HOH . G 5 HOH A 196 696 696 HOH HOH . G 5 HOH A 197 697 1489 HOH HOH . G 5 HOH A 198 698 1172 HOH HOH . G 5 HOH A 199 699 2070 HOH HOH . G 5 HOH A 200 700 1565 HOH HOH . G 5 HOH A 201 701 1109 HOH HOH . G 5 HOH A 202 702 997 HOH HOH . G 5 HOH A 203 703 864 HOH HOH . G 5 HOH A 204 704 2250 HOH HOH . G 5 HOH A 205 705 2788 HOH HOH . G 5 HOH A 206 706 1987 HOH HOH . G 5 HOH A 207 707 1694 HOH HOH . G 5 HOH A 208 708 2554 HOH HOH . G 5 HOH A 209 709 1839 HOH HOH . G 5 HOH A 210 710 2180 HOH HOH . G 5 HOH A 211 711 950 HOH HOH . G 5 HOH A 212 712 1946 HOH HOH . G 5 HOH A 213 713 1772 HOH HOH . G 5 HOH A 214 714 979 HOH HOH . G 5 HOH A 215 715 1190 HOH HOH . G 5 HOH A 216 716 2704 HOH HOH . G 5 HOH A 217 717 1319 HOH HOH . G 5 HOH A 218 718 1421 HOH HOH . G 5 HOH A 219 719 895 HOH HOH . G 5 HOH A 220 720 1534 HOH HOH . G 5 HOH A 221 721 1260 HOH HOH . G 5 HOH A 222 722 1706 HOH HOH . G 5 HOH A 223 723 2539 HOH HOH . G 5 HOH A 224 724 1690 HOH HOH . G 5 HOH A 225 725 2756 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 D8V . . . F 4 0.136 11.858 9.394 0.73 30.83 ? C4 D8V 405 A 1 HETATM 2 C C5 D8V . . . F 4 0.978 10.623 9.298 0.73 30.3 ? C5 D8V 405 A 1 HETATM 3 C C6 D8V . . . F 4 1.551 8.506 9.462 0.73 21.55 ? C6 D8V 405 A 1 HETATM 4 N N1 D8V . . . F 4 0.535 9.419 9.538 0.73 25.82 ? N1 D8V 405 A 1 HETATM 5 C C7 D8V . . . F 4 2.763 9.015 9.143 0.73 20.38 ? C7 D8V 405 A 1 HETATM 6 C C8 D8V . . . F 4 1.314 7.04 9.775 0.73 17.98 ? C8 D8V 405 A 1 HETATM 7 N N2 D8V . . . F 4 1.759 4.221 9.158 0.73 12.99 1 N2 D8V 405 A 1 HETATM 8 C C9 D8V . . . F 4 0.486 6.29 8.727 0.73 18.67 ? C9 D8V 405 A 1 HETATM 9 C C10 D8V . . . F 4 0.394 4.807 9.031 0.73 18.82 ? C10 D8V 405 A 1 HETATM 10 C C11 D8V . . . F 4 2.535 4.882 10.24 0.73 17.35 ? C11 D8V 405 A 1 HETATM 11 C C12 D8V . . . F 4 2.673 6.363 9.945 0.73 16.17 ? C12 D8V 405 A 1 HETATM 12 O O D8V . . . F 4 0.634 7.022 11.027 0.73 24.64 ? O D8V 405 A 1 HETATM 13 S S D8V . . . F 4 2.666 10.72 8.934 0.73 30.13 ? S D8V 405 A 1 HETATM 14 N N D8V . . . F 4 0.76 12.757 10.482 0.73 38 1 N D8V 405 A 1 HETATM 15 C C D8V . . . F 4 -0.193 13.005 11.6 0.73 40.62 ? C D8V 405 A 1 HETATM 16 C C1 D8V . . . F 4 1.32 14.091 9.901 0.73 39.49 ? C1 D8V 405 A 1 HETATM 17 C C2 D8V . . . F 4 2.743 14.084 10.07 0.73 35.88 ? C2 D8V 405 A 1 HETATM 18 C C3 D8V . . . F 4 3.901 14.03 10.266 0.73 30.15 ? C3 D8V 405 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #