data_5QBU # _model_server_result.job_id -69G0AtukncXV89qMQSu7Q _model_server_result.datetime_utc '2024-11-20 08:52:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 5QBU # _exptl.entry_id 5QBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 632.679 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[1-(3-{5-(1H-imidazole-5-carbonyl)-3-[4-(trifluoromethyl)phenyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-1-yl}propyl)piperidin-4-yl]-3-methyl-1,3-dihydro-2H-benzimidazol-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.83 _cell.angle_gamma 90 _cell.entry_id 5QBU _cell.length_a 114.193 _cell.length_b 37.114 _cell.length_c 105.854 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 22 1_555 A SG CYS 67 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf2 A SG CYS 57 A CYS 56 1_555 A SG CYS 100 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf3 A SG CYS 159 A CYS 158 1_555 A SG CYS 207 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf4 B SG CYS 23 B CYS 22 1_555 B SG CYS 67 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf5 B SG CYS 57 B CYS 56 1_555 B SG CYS 100 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf6 B SG CYS 159 B CYS 158 1_555 B SG CYS 207 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C33 H35 F3 N8 O2' _chem_comp.formula_weight 632.679 _chem_comp.id B8J _chem_comp.mon_nstd_flag . _chem_comp.name 1-[1-(3-{5-(1H-imidazole-5-carbonyl)-3-[4-(trifluoromethyl)phenyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-1-yl}propyl)piperidin-4-yl]-3-methyl-1,3-dihydro-2H-benzimidazol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C95 N15 B8J sing 70 n n C5 C4 B8J doub 71 n y C5 C6 B8J sing 72 n y F97 C87 B8J sing 73 n n C4 C3 B8J sing 74 n y N15 C6 B8J sing 75 n n N15 C14 B8J sing 76 n n C6 C1 B8J doub 77 n y F93 C87 B8J sing 78 n n C3 C2 B8J doub 79 n y C87 F91 B8J sing 80 n n C87 C78 B8J sing 81 n n C14 O95 B8J doub 82 n n C14 N13 B8J sing 83 n n C1 C2 B8J sing 84 n y C1 N13 B8J sing 85 n n N13 C20 B8J sing 86 n n C22 C20 B8J sing 87 n n C22 C23 B8J sing 88 n n C78 C77 B8J doub 89 n y C78 C79 B8J sing 90 n y C77 C76 B8J sing 91 n y C79 C80 B8J doub 92 n y C20 C26 B8J sing 93 n n C23 N24 B8J sing 94 n n C76 C74 B8J doub 95 n y C80 C74 B8J sing 96 n y C26 C25 B8J sing 97 n n C74 C42 B8J sing 98 n n N24 C25 B8J sing 99 n n N24 C33 B8J sing 100 n n C42 N41 B8J doub 101 n y C42 C43 B8J sing 102 n y C33 C35 B8J sing 103 n n N41 N39 B8J sing 104 n y C35 C37 B8J sing 105 n n C43 C53 B8J sing 106 n n C43 C44 B8J doub 107 n y C53 N52 B8J sing 108 n n N39 C44 B8J sing 109 n y N39 C37 B8J sing 110 n n C44 C50 B8J sing 111 n n N52 C51 B8J sing 112 n n N52 C59 B8J sing 113 n n O61 C59 B8J doub 114 n n C50 C51 B8J sing 115 n n C59 C63 B8J sing 116 n n C63 N65 B8J sing 117 n y C63 C68 B8J doub 118 n y N65 C66 B8J sing 119 n y C68 N67 B8J sing 120 n y C66 N67 B8J doub 121 n y C2 H1 B8J sing 122 n n C20 H2 B8J sing 123 n n C22 H3 B8J sing 124 n n C22 H4 B8J sing 125 n n C23 H5 B8J sing 126 n n C23 H6 B8J sing 127 n n C25 H7 B8J sing 128 n n C25 H8 B8J sing 129 n n C26 H9 B8J sing 130 n n C26 H10 B8J sing 131 n n C3 H11 B8J sing 132 n n C33 H12 B8J sing 133 n n C33 H13 B8J sing 134 n n C35 H14 B8J sing 135 n n C35 H15 B8J sing 136 n n C37 H16 B8J sing 137 n n C37 H17 B8J sing 138 n n C4 H18 B8J sing 139 n n C5 H19 B8J sing 140 n n C50 H20 B8J sing 141 n n C50 H21 B8J sing 142 n n C51 H22 B8J sing 143 n n C51 H23 B8J sing 144 n n C53 H24 B8J sing 145 n n C53 H25 B8J sing 146 n n C66 H26 B8J sing 147 n n C68 H27 B8J sing 148 n n C76 H28 B8J sing 149 n n C77 H29 B8J sing 150 n n C79 H30 B8J sing 151 n n C80 H31 B8J sing 152 n n C95 H32 B8J sing 153 n n C95 H33 B8J sing 154 n n C95 H34 B8J sing 155 n n N65 H36 B8J sing 156 n n # _atom_sites.entry_id 5QBU _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002987 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B8J A 1 901 901 B8J B8J . D 2 B8J B 1 901 901 B8J B8J . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1002 1002 HOH HOH . E 3 HOH A 3 1003 1003 HOH HOH . E 3 HOH A 4 1004 1004 HOH HOH . E 3 HOH A 5 1005 1005 HOH HOH . E 3 HOH A 6 1006 1006 HOH HOH . E 3 HOH A 7 1007 1007 HOH HOH . E 3 HOH A 8 1008 1008 HOH HOH . E 3 HOH A 9 1009 1009 HOH HOH . E 3 HOH A 10 1010 1010 HOH HOH . E 3 HOH A 11 1011 1011 HOH HOH . E 3 HOH A 12 1012 1012 HOH HOH . E 3 HOH A 13 1013 1013 HOH HOH . E 3 HOH A 14 1014 1014 HOH HOH . E 3 HOH A 15 1015 1015 HOH HOH . E 3 HOH A 16 1016 1016 HOH HOH . E 3 HOH A 17 1017 1017 HOH HOH . E 3 HOH A 18 1018 1018 HOH HOH . E 3 HOH A 19 1019 1019 HOH HOH . E 3 HOH A 20 1020 1020 HOH HOH . E 3 HOH A 21 1021 1021 HOH HOH . E 3 HOH A 22 1022 1022 HOH HOH . E 3 HOH A 23 1023 1023 HOH HOH . E 3 HOH A 24 1024 1024 HOH HOH . E 3 HOH A 25 1025 1025 HOH HOH . E 3 HOH A 26 1026 1026 HOH HOH . E 3 HOH A 27 1027 1027 HOH HOH . E 3 HOH A 28 1028 1028 HOH HOH . E 3 HOH A 29 1029 1029 HOH HOH . E 3 HOH A 30 1030 1030 HOH HOH . E 3 HOH A 31 1031 1031 HOH HOH . E 3 HOH A 32 1032 1032 HOH HOH . E 3 HOH A 33 1033 1033 HOH HOH . E 3 HOH A 34 1034 1034 HOH HOH . E 3 HOH A 35 1035 1035 HOH HOH . E 3 HOH A 36 1036 1036 HOH HOH . E 3 HOH A 37 1037 1037 HOH HOH . E 3 HOH A 38 1038 1038 HOH HOH . F 3 HOH B 1 1001 1001 HOH HOH . F 3 HOH B 2 1002 1002 HOH HOH . F 3 HOH B 3 1003 1003 HOH HOH . F 3 HOH B 4 1004 1004 HOH HOH . F 3 HOH B 5 1005 1005 HOH HOH . F 3 HOH B 6 1006 1006 HOH HOH . F 3 HOH B 7 1007 1007 HOH HOH . F 3 HOH B 8 1008 1008 HOH HOH . F 3 HOH B 9 1009 1009 HOH HOH . F 3 HOH B 10 1010 1010 HOH HOH . F 3 HOH B 11 1011 1011 HOH HOH . F 3 HOH B 12 1012 1012 HOH HOH . F 3 HOH B 13 1013 1013 HOH HOH . F 3 HOH B 14 1014 1014 HOH HOH . F 3 HOH B 15 1015 1015 HOH HOH . F 3 HOH B 16 1016 1016 HOH HOH . F 3 HOH B 17 1017 1017 HOH HOH . F 3 HOH B 18 1018 1018 HOH HOH . F 3 HOH B 19 1019 1019 HOH HOH . F 3 HOH B 20 1020 1020 HOH HOH . F 3 HOH B 21 1021 1021 HOH HOH . F 3 HOH B 22 1022 1022 HOH HOH . F 3 HOH B 23 1023 1023 HOH HOH . F 3 HOH B 24 1024 1024 HOH HOH . F 3 HOH B 25 1025 1025 HOH HOH . F 3 HOH B 26 1026 1026 HOH HOH . F 3 HOH B 27 1027 1027 HOH HOH . F 3 HOH B 28 1028 1028 HOH HOH . F 3 HOH B 29 1029 1029 HOH HOH . F 3 HOH B 30 1030 1030 HOH HOH . F 3 HOH B 31 1031 1031 HOH HOH . F 3 HOH B 32 1032 1032 HOH HOH . F 3 HOH B 33 1033 1033 HOH HOH . F 3 HOH B 34 1034 1034 HOH HOH . F 3 HOH B 35 1035 1035 HOH HOH . F 3 HOH B 36 1036 1036 HOH HOH . F 3 HOH B 37 1037 1037 HOH HOH . F 3 HOH B 38 1038 1038 HOH HOH . F 3 HOH B 39 1039 1039 HOH HOH . F 3 HOH B 40 1040 1040 HOH HOH . F 3 HOH B 41 1041 1041 HOH HOH . F 3 HOH B 42 1042 1042 HOH HOH . F 3 HOH B 43 1043 1043 HOH HOH . F 3 HOH B 44 1044 1044 HOH HOH . F 3 HOH B 45 1045 1045 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B8J . . . C 2 48.22 -1.243 39.365 1 36.39 ? C1 B8J 901 A 1 HETATM 2 C C14 B8J . . . C 2 48.583 -3.501 39.198 1 35.69 ? C14 B8J 901 A 1 HETATM 3 C C2 B8J . . . C 2 47.794 0.057 39.677 1 37.05 ? C2 B8J 901 A 1 HETATM 4 C C20 B8J . . . C 2 46.821 -2.908 40.88 1 35.65 ? C20 B8J 901 A 1 HETATM 5 C C22 B8J . . . C 2 45.44 -3.035 40.211 1 35.72 ? C22 B8J 901 A 1 HETATM 6 C C23 B8J . . . C 2 44.344 -3.177 41.252 1 35.53 ? C23 B8J 901 A 1 HETATM 7 C C25 B8J . . . C 2 45.698 -2.457 43.099 1 34.98 ? C25 B8J 901 A 1 HETATM 8 C C26 B8J . . . C 2 46.765 -1.986 42.107 1 35.88 ? C26 B8J 901 A 1 HETATM 9 C C3 B8J . . . C 2 48.378 1.132 39.008 1 38.88 ? C3 B8J 901 A 1 HETATM 10 C C33 B8J . . . C 2 43.93 -4.182 43.483 1 33.35 ? C33 B8J 901 A 1 HETATM 11 C C35 B8J . . . C 2 42.792 -3.285 43.901 1 30.94 ? C35 B8J 901 A 1 HETATM 12 C C37 B8J . . . C 2 41.978 -3.948 44.987 1 29.36 ? C37 B8J 901 A 1 HETATM 13 C C4 B8J . . . C 2 49.367 0.922 38.048 1 39.02 ? C4 B8J 901 A 1 HETATM 14 C C42 B8J . . . C 2 39.685 -5.953 43.225 1 26.86 ? C42 B8J 901 A 1 HETATM 15 C C43 B8J . . . C 2 40.125 -6.935 44.147 1 28.33 ? C43 B8J 901 A 1 HETATM 16 C C44 B8J . . . C 2 41.027 -6.311 44.93 1 28.92 ? C44 B8J 901 A 1 HETATM 17 C C5 B8J . . . C 2 49.795 -0.377 37.731 1 37.07 ? C5 B8J 901 A 1 HETATM 18 C C50 B8J . . . C 2 41.757 -6.985 46.07 1 29.37 ? C50 B8J 901 A 1 HETATM 19 C C51 B8J . . . C 2 41.19 -8.419 46.291 1 29.72 ? C51 B8J 901 A 1 HETATM 20 C C53 B8J . . . C 2 39.767 -8.357 44.386 1 29.07 ? C53 B8J 901 A 1 HETATM 21 C C59 B8J . . . C 2 38.618 -8.641 46.512 1 33.82 ? C59 B8J 901 A 1 HETATM 22 C C6 B8J . . . C 2 49.21 -1.451 38.4 1 35.57 ? C6 B8J 901 A 1 HETATM 23 C C63 B8J . . . C 2 38.563 -8.752 48.014 0.5 38.53 ? C63 B8J 901 A 1 HETATM 24 C C66 B8J . . . C 2 38.002 -9.507 49.942 0.5 43.56 ? C66 B8J 901 A 1 HETATM 25 C C68 B8J . . . C 2 39.125 -7.936 48.948 0.5 39.39 ? C68 B8J 901 A 1 HETATM 26 C C74 B8J . . . C 2 38.731 -6.05 42.144 1 26.57 ? C74 B8J 901 A 1 HETATM 27 C C76 B8J . . . C 2 38.547 -7.254 41.457 1 25.42 ? C76 B8J 901 A 1 HETATM 28 C C77 B8J . . . C 2 37.642 -7.336 40.415 1 25.53 ? C77 B8J 901 A 1 HETATM 29 C C78 B8J . . . C 2 36.901 -6.215 40.021 1 25.45 ? C78 B8J 901 A 1 HETATM 30 C C79 B8J . . . C 2 37.086 -5.013 40.707 1 26.28 ? C79 B8J 901 A 1 HETATM 31 C C80 B8J . . . C 2 37.991 -4.928 41.75 1 26.85 ? C80 B8J 901 A 1 HETATM 32 C C87 B8J . . . C 2 35.912 -6.296 38.901 1 23.89 ? C87 B8J 901 A 1 HETATM 33 C C95 B8J . . . C 2 50.387 -3.49 37.411 1 33.17 ? C95 B8J 901 A 1 HETATM 34 F F91 B8J . . . C 2 36.306 -5.679 37.792 1 21.95 ? F91 B8J 901 A 1 HETATM 35 F F93 B8J . . . C 2 34.814 -5.693 39.2 1 23.88 ? F93 B8J 901 A 1 HETATM 36 F F97 B8J . . . C 2 35.589 -7.559 38.572 1 23.45 ? F97 B8J 901 A 1 HETATM 37 N N13 B8J . . . C 2 47.848 -2.523 39.853 1 36.82 ? N13 B8J 901 A 1 HETATM 38 N N15 B8J . . . C 2 49.42 -2.827 38.308 1 34.41 ? N15 B8J 901 A 1 HETATM 39 N N24 B8J . . . C 2 44.909 -3.569 42.543 1 35.14 ? N24 B8J 901 A 1 HETATM 40 N N39 B8J . . . C 2 41.139 -5.023 44.491 1 28.28 ? N39 B8J 901 A 1 HETATM 41 N N41 B8J . . . C 2 40.315 -4.778 43.432 1 26.27 ? N41 B8J 901 A 1 HETATM 42 N N52 B8J . . . C 2 39.783 -8.512 45.835 1 30.57 ? N52 B8J 901 A 1 HETATM 43 N N65 B8J . . . C 2 37.841 -9.736 48.649 0.5 43.62 ? N65 B8J 901 A 1 HETATM 44 N N67 B8J . . . C 2 38.764 -8.438 50.165 0.5 40.74 ? N67 B8J 901 A 1 HETATM 45 O O61 B8J . . . C 2 37.54 -8.661 45.937 1 31.02 ? O61 B8J 901 A 1 HETATM 46 O O95 B8J . . . C 2 48.512 -4.706 39.371 1 32.56 ? O95 B8J 901 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 46 #