data_5QCK # _model_server_result.job_id GwRp7Qcve6gg4sri9rpJDg _model_server_result.datetime_utc '2024-10-10 17:20:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QCK # _exptl.entry_id 5QCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QCK _cell.length_a 79.49 _cell.length_b 79.49 _cell.length_c 106.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 5QCK _atom_sites.fract_transf_matrix[1][1] 0.01258 _atom_sites.fract_transf_matrix[1][2] 0.007263 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BUV A 1 301 1 BUV LG1 . C 3 SO4 A 1 302 2 SO4 SO4 . D 4 EDO A 1 303 4 EDO EDO . E 4 EDO A 1 304 11 EDO EDO . F 4 EDO A 1 305 13 EDO EDO . G 5 HOH A 1 401 4 HOH HOH . G 5 HOH A 2 402 34 HOH HOH . G 5 HOH A 3 403 12 HOH HOH . G 5 HOH A 4 404 37 HOH HOH . G 5 HOH A 5 405 16 HOH HOH . G 5 HOH A 6 406 18 HOH HOH . G 5 HOH A 7 407 28 HOH HOH . G 5 HOH A 8 408 25 HOH HOH . G 5 HOH A 9 409 2 HOH HOH . G 5 HOH A 10 410 1 HOH HOH . G 5 HOH A 11 411 11 HOH HOH . G 5 HOH A 12 412 39 HOH HOH . G 5 HOH A 13 413 8 HOH HOH . G 5 HOH A 14 414 36 HOH HOH . G 5 HOH A 15 415 7 HOH HOH . G 5 HOH A 16 416 14 HOH HOH . G 5 HOH A 17 417 22 HOH HOH . G 5 HOH A 18 418 31 HOH HOH . G 5 HOH A 19 419 24 HOH HOH . G 5 HOH A 20 420 38 HOH HOH . G 5 HOH A 21 421 20 HOH HOH . G 5 HOH A 22 422 33 HOH HOH . G 5 HOH A 23 423 3 HOH HOH . G 5 HOH A 24 424 10 HOH HOH . G 5 HOH A 25 425 35 HOH HOH . G 5 HOH A 26 426 9 HOH HOH . G 5 HOH A 27 427 13 HOH HOH . G 5 HOH A 28 428 26 HOH HOH . G 5 HOH A 29 429 29 HOH HOH . G 5 HOH A 30 430 23 HOH HOH . G 5 HOH A 31 431 27 HOH HOH . G 5 HOH A 32 432 21 HOH HOH . G 5 HOH A 33 433 15 HOH HOH . G 5 HOH A 34 434 5 HOH HOH . G 5 HOH A 35 435 6 HOH HOH . G 5 HOH A 36 436 32 HOH HOH . G 5 HOH A 37 437 30 HOH HOH . G 5 HOH A 38 438 19 HOH HOH . G 5 HOH A 39 439 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 51.998 -26.43 42.197 1 74.42 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 4 52.316 -25.378 41.292 1 76.66 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 4 53.293 -26.913 42.895 1 74.68 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 4 53.035 -28.066 43.699 1 76.69 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #