data_5QCM # _model_server_result.job_id o6dQYwhL4Nw-a09sJL-uCQ _model_server_result.datetime_utc '2024-10-10 15:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":317}' # _entry.id 5QCM # _exptl.entry_id 5QCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QCM _cell.length_a 79.1 _cell.length_b 79.1 _cell.length_c 106.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 5QCM _atom_sites.fract_transf_matrix[1][1] 0.012642 _atom_sites.fract_transf_matrix[1][2] 0.007299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BVJ A 1 301 1 BVJ LG1 . C 3 SO4 A 1 302 2 SO4 SO4 . D 4 EDO A 1 303 4 EDO EDO . E 4 EDO A 1 304 5 EDO EDO . F 4 EDO A 1 305 6 EDO EDO . G 4 EDO A 1 306 7 EDO EDO . H 4 EDO A 1 307 8 EDO EDO . I 4 EDO A 1 308 9 EDO EDO . J 4 EDO A 1 309 10 EDO EDO . K 4 EDO A 1 310 11 EDO EDO . L 4 EDO A 1 311 13 EDO EDO . M 4 EDO A 1 312 14 EDO EDO . N 4 EDO A 1 313 15 EDO EDO . O 4 EDO A 1 314 16 EDO EDO . P 4 EDO A 1 315 17 EDO EDO . Q 4 EDO A 1 316 18 EDO EDO . R 4 EDO A 1 317 20 EDO EDO . S 5 HOH A 1 401 133 HOH HOH . S 5 HOH A 2 402 129 HOH HOH . S 5 HOH A 3 403 132 HOH HOH . S 5 HOH A 4 404 128 HOH HOH . S 5 HOH A 5 405 117 HOH HOH . S 5 HOH A 6 406 127 HOH HOH . S 5 HOH A 7 407 77 HOH HOH . S 5 HOH A 8 408 53 HOH HOH . S 5 HOH A 9 409 145 HOH HOH . S 5 HOH A 10 410 36 HOH HOH . S 5 HOH A 11 411 23 HOH HOH . S 5 HOH A 12 412 79 HOH HOH . S 5 HOH A 13 413 7 HOH HOH . S 5 HOH A 14 414 75 HOH HOH . S 5 HOH A 15 415 24 HOH HOH . S 5 HOH A 16 416 119 HOH HOH . S 5 HOH A 17 417 76 HOH HOH . S 5 HOH A 18 418 130 HOH HOH . S 5 HOH A 19 419 2 HOH HOH . S 5 HOH A 20 420 72 HOH HOH . S 5 HOH A 21 421 131 HOH HOH . S 5 HOH A 22 422 45 HOH HOH . S 5 HOH A 23 423 88 HOH HOH . S 5 HOH A 24 424 38 HOH HOH . S 5 HOH A 25 425 25 HOH HOH . S 5 HOH A 26 426 10 HOH HOH . S 5 HOH A 27 427 91 HOH HOH . S 5 HOH A 28 428 44 HOH HOH . S 5 HOH A 29 429 55 HOH HOH . S 5 HOH A 30 430 74 HOH HOH . S 5 HOH A 31 431 66 HOH HOH . S 5 HOH A 32 432 43 HOH HOH . S 5 HOH A 33 433 5 HOH HOH . S 5 HOH A 34 434 150 HOH HOH . S 5 HOH A 35 435 12 HOH HOH . S 5 HOH A 36 436 27 HOH HOH . S 5 HOH A 37 437 124 HOH HOH . S 5 HOH A 38 438 3 HOH HOH . S 5 HOH A 39 439 39 HOH HOH . S 5 HOH A 40 440 52 HOH HOH . S 5 HOH A 41 441 21 HOH HOH . S 5 HOH A 42 442 151 HOH HOH . S 5 HOH A 43 443 146 HOH HOH . S 5 HOH A 44 444 11 HOH HOH . S 5 HOH A 45 445 113 HOH HOH . S 5 HOH A 46 446 18 HOH HOH . S 5 HOH A 47 447 1 HOH HOH . S 5 HOH A 48 448 81 HOH HOH . S 5 HOH A 49 449 71 HOH HOH . S 5 HOH A 50 450 58 HOH HOH . S 5 HOH A 51 451 109 HOH HOH . S 5 HOH A 52 452 15 HOH HOH . S 5 HOH A 53 453 17 HOH HOH . S 5 HOH A 54 454 80 HOH HOH . S 5 HOH A 55 455 123 HOH HOH . S 5 HOH A 56 456 69 HOH HOH . S 5 HOH A 57 457 9 HOH HOH . S 5 HOH A 58 458 82 HOH HOH . S 5 HOH A 59 459 110 HOH HOH . S 5 HOH A 60 460 30 HOH HOH . S 5 HOH A 61 461 40 HOH HOH . S 5 HOH A 62 462 134 HOH HOH . S 5 HOH A 63 463 8 HOH HOH . S 5 HOH A 64 464 32 HOH HOH . S 5 HOH A 65 465 118 HOH HOH . S 5 HOH A 66 466 20 HOH HOH . S 5 HOH A 67 467 4 HOH HOH . S 5 HOH A 68 468 152 HOH HOH . S 5 HOH A 69 469 14 HOH HOH . S 5 HOH A 70 470 6 HOH HOH . S 5 HOH A 71 471 64 HOH HOH . S 5 HOH A 72 472 141 HOH HOH . S 5 HOH A 73 473 16 HOH HOH . S 5 HOH A 74 474 59 HOH HOH . S 5 HOH A 75 475 94 HOH HOH . S 5 HOH A 76 476 34 HOH HOH . S 5 HOH A 77 477 139 HOH HOH . S 5 HOH A 78 478 104 HOH HOH . S 5 HOH A 79 479 107 HOH HOH . S 5 HOH A 80 480 153 HOH HOH . S 5 HOH A 81 481 70 HOH HOH . S 5 HOH A 82 482 140 HOH HOH . S 5 HOH A 83 483 121 HOH HOH . S 5 HOH A 84 484 106 HOH HOH . S 5 HOH A 85 485 84 HOH HOH . S 5 HOH A 86 486 111 HOH HOH . S 5 HOH A 87 487 37 HOH HOH . S 5 HOH A 88 488 100 HOH HOH . S 5 HOH A 89 489 41 HOH HOH . S 5 HOH A 90 490 78 HOH HOH . S 5 HOH A 91 491 142 HOH HOH . S 5 HOH A 92 492 46 HOH HOH . S 5 HOH A 93 493 63 HOH HOH . S 5 HOH A 94 494 49 HOH HOH . S 5 HOH A 95 495 144 HOH HOH . S 5 HOH A 96 496 90 HOH HOH . S 5 HOH A 97 497 68 HOH HOH . S 5 HOH A 98 498 93 HOH HOH . S 5 HOH A 99 499 29 HOH HOH . S 5 HOH A 100 500 136 HOH HOH . S 5 HOH A 101 501 65 HOH HOH . S 5 HOH A 102 502 99 HOH HOH . S 5 HOH A 103 503 47 HOH HOH . S 5 HOH A 104 504 85 HOH HOH . S 5 HOH A 105 505 95 HOH HOH . S 5 HOH A 106 506 126 HOH HOH . S 5 HOH A 107 507 22 HOH HOH . S 5 HOH A 108 508 19 HOH HOH . S 5 HOH A 109 509 102 HOH HOH . S 5 HOH A 110 510 120 HOH HOH . S 5 HOH A 111 511 60 HOH HOH . S 5 HOH A 112 512 101 HOH HOH . S 5 HOH A 113 513 98 HOH HOH . S 5 HOH A 114 514 35 HOH HOH . S 5 HOH A 115 515 50 HOH HOH . S 5 HOH A 116 516 26 HOH HOH . S 5 HOH A 117 517 92 HOH HOH . S 5 HOH A 118 518 114 HOH HOH . S 5 HOH A 119 519 122 HOH HOH . S 5 HOH A 120 520 48 HOH HOH . S 5 HOH A 121 521 105 HOH HOH . S 5 HOH A 122 522 108 HOH HOH . S 5 HOH A 123 523 61 HOH HOH . S 5 HOH A 124 524 31 HOH HOH . S 5 HOH A 125 525 83 HOH HOH . S 5 HOH A 126 526 89 HOH HOH . S 5 HOH A 127 527 56 HOH HOH . S 5 HOH A 128 528 51 HOH HOH . S 5 HOH A 129 529 54 HOH HOH . S 5 HOH A 130 530 33 HOH HOH . S 5 HOH A 131 531 112 HOH HOH . S 5 HOH A 132 532 57 HOH HOH . S 5 HOH A 133 533 42 HOH HOH . S 5 HOH A 134 534 67 HOH HOH . S 5 HOH A 135 535 149 HOH HOH . S 5 HOH A 136 536 135 HOH HOH . S 5 HOH A 137 537 96 HOH HOH . S 5 HOH A 138 538 28 HOH HOH . S 5 HOH A 139 539 13 HOH HOH . S 5 HOH A 140 540 86 HOH HOH . S 5 HOH A 141 541 125 HOH HOH . S 5 HOH A 142 542 137 HOH HOH . S 5 HOH A 143 543 87 HOH HOH . S 5 HOH A 144 544 116 HOH HOH . S 5 HOH A 145 545 148 HOH HOH . S 5 HOH A 146 546 73 HOH HOH . S 5 HOH A 147 547 62 HOH HOH . S 5 HOH A 148 548 103 HOH HOH . S 5 HOH A 149 549 143 HOH HOH . S 5 HOH A 150 550 138 HOH HOH . S 5 HOH A 151 551 147 HOH HOH . S 5 HOH A 152 552 97 HOH HOH . S 5 HOH A 153 553 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 4 44.258 -25.708 29.214 1 59.14 ? C1 EDO 317 A 1 HETATM 2 O O1 EDO . . . R 4 44.653 -24.79 30.215 1 60.14 ? O1 EDO 317 A 1 HETATM 3 C C2 EDO . . . R 4 43.948 -24.924 27.925 1 60.47 ? C2 EDO 317 A 1 HETATM 4 O O2 EDO . . . R 4 45.052 -24.091 27.602 1 62.37 ? O2 EDO 317 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #