data_5QD0 # _model_server_result.job_id aNwQGju2s6xmfsMCcXg2mA _model_server_result.datetime_utc '2024-12-21 16:56:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5QD0 # _exptl.entry_id 5QD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.656 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S,8S,10R)-8-[(1R)-1-hydroxy-2-{[(5-propyl-1H-pyrazol-3-yl)methyl]amino}ethyl]-4,5,10-trimethyl-1-oxa-4,7-diazacyclohexadecane-3,6-dione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.69 _cell.angle_gamma 90 _cell.entry_id 5QD0 _cell.length_a 79.919 _cell.length_b 102.374 _cell.length_c 98.643 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 155 1_555 A SG CYS 375 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 233 A CYS 217 1_555 A SG CYS 398 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 285 A CYS 269 1_555 A SG CYS 335 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 171 B CYS 155 1_555 B SG CYS 375 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 B SG CYS 233 B CYS 217 1_555 B SG CYS 398 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf6 B SG CYS 285 B CYS 269 1_555 B SG CYS 335 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 C SG CYS 171 C CYS 155 1_555 C SG CYS 375 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 C SG CYS 233 C CYS 217 1_555 C SG CYS 398 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 C SG CYS 285 C CYS 269 1_555 C SG CYS 335 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C25 H45 N5 O4' _chem_comp.formula_weight 479.656 _chem_comp.id E5Y _chem_comp.mon_nstd_flag . _chem_comp.name (5S,8S,10R)-8-[(1R)-1-hydroxy-2-{[(5-propyl-1H-pyrazol-3-yl)methyl]amino}ethyl]-4,5,10-trimethyl-1-oxa-4,7-diazacyclohexadecane-3,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C11 E5Y sing 83 n n C8 C11 E5Y sing 84 n n C8 C7 E5Y sing 85 n n C7 N1 E5Y sing 86 n y C7 C5 E5Y doub 87 n y N1 N3 E5Y sing 88 n y N3 C4 E5Y doub 89 n y C5 C4 E5Y sing 90 n y C4 C18 E5Y sing 91 n n C18 N21 E5Y sing 92 n n N21 C23 E5Y sing 93 n n C23 C26 E5Y sing 94 n n O79 C34 E5Y doub 95 n n O28 C26 E5Y sing 96 n n C26 C30 E5Y sing 97 n n C30 C63 E5Y sing 98 n n C30 N32 E5Y sing 99 n n C66 C61 E5Y sing 100 n n C34 N32 E5Y sing 101 n n C34 C35 E5Y sing 102 n n C75 C35 E5Y sing 103 n n C63 C61 E5Y sing 104 n n C35 N37 E5Y sing 105 n n C61 C58 E5Y sing 106 n n C71 N37 E5Y sing 107 n n C58 C55 E5Y sing 108 n n N37 C38 E5Y sing 109 n n C55 C52 E5Y sing 110 n n C38 O70 E5Y doub 111 n n C38 C39 E5Y sing 112 n n C52 C49 E5Y sing 113 n n C39 O42 E5Y sing 114 n n C49 C46 E5Y sing 115 n n O42 C43 E5Y sing 116 n n C43 C46 E5Y sing 117 n n C5 H1 E5Y sing 118 n n C8 H2 E5Y sing 119 n n C8 H3 E5Y sing 120 n n C11 H4 E5Y sing 121 n n C11 H5 E5Y sing 122 n n C18 H6 E5Y sing 123 n n C18 H7 E5Y sing 124 n n C14 H8 E5Y sing 125 n n C14 H9 E5Y sing 126 n n C14 H10 E5Y sing 127 n n C23 H11 E5Y sing 128 n n C23 H12 E5Y sing 129 n n C26 H13 E5Y sing 130 n n C30 H14 E5Y sing 131 n n C35 H15 E5Y sing 132 n n C39 H16 E5Y sing 133 n n C39 H17 E5Y sing 134 n n C43 H18 E5Y sing 135 n n C43 H19 E5Y sing 136 n n C46 H20 E5Y sing 137 n n C46 H21 E5Y sing 138 n n C49 H22 E5Y sing 139 n n C49 H23 E5Y sing 140 n n C52 H24 E5Y sing 141 n n C52 H25 E5Y sing 142 n n C55 H26 E5Y sing 143 n n C55 H27 E5Y sing 144 n n C58 H28 E5Y sing 145 n n C58 H29 E5Y sing 146 n n C61 H30 E5Y sing 147 n n C63 H31 E5Y sing 148 n n C63 H32 E5Y sing 149 n n C66 H33 E5Y sing 150 n n C66 H34 E5Y sing 151 n n C66 H35 E5Y sing 152 n n C71 H36 E5Y sing 153 n n C71 H37 E5Y sing 154 n n C71 H38 E5Y sing 155 n n C75 H39 E5Y sing 156 n n C75 H40 E5Y sing 157 n n C75 H41 E5Y sing 158 n n N1 H42 E5Y sing 159 n n N21 H43 E5Y sing 160 n n N32 H45 E5Y sing 161 n n O28 H46 E5Y sing 162 n n # _atom_sites.entry_id 5QD0 _atom_sites.fract_transf_matrix[1][1] 0.012513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00328 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 E5Y A 1 401 401 E5Y E5Y . E 2 E5Y B 1 401 401 E5Y E5Y . F 2 E5Y C 1 401 401 E5Y E5Y . G 3 HOH A 1 501 501 HOH HOH . G 3 HOH A 2 502 502 HOH HOH . G 3 HOH A 3 503 503 HOH HOH . G 3 HOH A 4 504 504 HOH HOH . G 3 HOH A 5 505 505 HOH HOH . G 3 HOH A 6 506 506 HOH HOH . G 3 HOH A 7 507 507 HOH HOH . G 3 HOH A 8 508 508 HOH HOH . G 3 HOH A 9 509 509 HOH HOH . G 3 HOH A 10 510 510 HOH HOH . G 3 HOH A 11 511 511 HOH HOH . G 3 HOH A 12 512 512 HOH HOH . G 3 HOH A 13 513 513 HOH HOH . G 3 HOH A 14 514 514 HOH HOH . G 3 HOH A 15 515 515 HOH HOH . G 3 HOH A 16 516 516 HOH HOH . G 3 HOH A 17 517 517 HOH HOH . G 3 HOH A 18 518 518 HOH HOH . H 3 HOH B 1 501 501 HOH HOH . H 3 HOH B 2 502 502 HOH HOH . H 3 HOH B 3 503 503 HOH HOH . H 3 HOH B 4 504 504 HOH HOH . H 3 HOH B 5 505 505 HOH HOH . H 3 HOH B 6 506 506 HOH HOH . H 3 HOH B 7 507 507 HOH HOH . H 3 HOH B 8 508 508 HOH HOH . H 3 HOH B 9 509 509 HOH HOH . H 3 HOH B 10 510 510 HOH HOH . H 3 HOH B 11 511 511 HOH HOH . H 3 HOH B 12 512 512 HOH HOH . H 3 HOH B 13 513 513 HOH HOH . H 3 HOH B 14 514 514 HOH HOH . H 3 HOH B 15 515 515 HOH HOH . I 3 HOH C 1 501 501 HOH HOH . I 3 HOH C 2 502 502 HOH HOH . I 3 HOH C 3 503 503 HOH HOH . I 3 HOH C 4 504 504 HOH HOH . I 3 HOH C 5 505 505 HOH HOH . I 3 HOH C 6 506 506 HOH HOH . I 3 HOH C 7 507 507 HOH HOH . I 3 HOH C 8 508 508 HOH HOH . I 3 HOH C 9 509 509 HOH HOH . I 3 HOH C 10 510 510 HOH HOH . I 3 HOH C 11 511 511 HOH HOH . I 3 HOH C 12 512 512 HOH HOH . I 3 HOH C 13 513 513 HOH HOH . I 3 HOH C 14 514 514 HOH HOH . I 3 HOH C 15 515 515 HOH HOH . I 3 HOH C 16 516 516 HOH HOH . I 3 HOH C 17 517 517 HOH HOH . I 3 HOH C 18 518 518 HOH HOH . I 3 HOH C 19 519 519 HOH HOH . I 3 HOH C 20 520 520 HOH HOH . I 3 HOH C 21 521 521 HOH HOH . I 3 HOH C 22 522 522 HOH HOH . I 3 HOH C 23 523 523 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 E5Y . . . E 2 14.68 10.496 -21.431 1 52.8 ? C4 E5Y 401 B 1 HETATM 2 C C5 E5Y . . . E 2 13.739 11.503 -21.183 1 48.76 ? C5 E5Y 401 B 1 HETATM 3 C C8 E5Y . . . E 2 11.222 11.755 -21.976 1 52.76 ? C8 E5Y 401 B 1 HETATM 4 C C11 E5Y . . . E 2 10.676 12.388 -20.703 1 55.65 ? C11 E5Y 401 B 1 HETATM 5 C C18 E5Y . . . E 2 16.098 10.38 -20.976 1 45.62 ? C18 E5Y 401 B 1 HETATM 6 C C14 E5Y . . . E 2 9.71 13.507 -20.987 0.5 61.26 ? C14 E5Y 401 B 1 HETATM 7 C C23 E5Y . . . E 2 15.641 8.688 -19.271 1 51.52 ? C23 E5Y 401 B 1 HETATM 8 C C26 E5Y . . . E 2 15.435 8.665 -17.759 1 48.71 ? C26 E5Y 401 B 1 HETATM 9 C C30 E5Y . . . E 2 14.727 7.361 -17.348 1 45.85 ? C30 E5Y 401 B 1 HETATM 10 C C34 E5Y . . . E 2 15.375 5.49 -18.774 1 47.96 ? C34 E5Y 401 B 1 HETATM 11 C C35 E5Y . . . E 2 16.362 4.331 -19.006 1 49.58 ? C35 E5Y 401 B 1 HETATM 12 C C38 E5Y . . . E 2 17.377 2.728 -17.516 1 55.54 ? C38 E5Y 401 B 1 HETATM 13 C C39 E5Y . . . E 2 17.248 1.685 -16.421 1 50.63 ? C39 E5Y 401 B 1 HETATM 14 C C43 E5Y . . . E 2 16.563 2.283 -14.232 1 66.13 ? C43 E5Y 401 B 1 HETATM 15 C C46 E5Y . . . E 2 16.966 3.197 -13.1 1 49.87 ? C46 E5Y 401 B 1 HETATM 16 C C49 E5Y . . . E 2 15.876 4.179 -12.721 1 51.88 ? C49 E5Y 401 B 1 HETATM 17 C C52 E5Y . . . E 2 14.489 3.851 -13.277 1 45.83 ? C52 E5Y 401 B 1 HETATM 18 C C55 E5Y . . . E 2 13.433 4.92 -12.953 1 47.05 ? C55 E5Y 401 B 1 HETATM 19 C C58 E5Y . . . E 2 13.584 6.233 -13.755 1 48.4 ? C58 E5Y 401 B 1 HETATM 20 C C61 E5Y . . . E 2 13.865 6.081 -15.279 1 40.12 ? C61 E5Y 401 B 1 HETATM 21 C C63 E5Y . . . E 2 14.397 7.389 -15.864 1 36.61 ? C63 E5Y 401 B 1 HETATM 22 C C66 E5Y . . . E 2 12.625 5.636 -16.027 1 37.07 ? C66 E5Y 401 B 1 HETATM 23 C C7 E5Y . . . E 2 12.603 11.113 -21.841 1 51.71 ? C7 E5Y 401 B 1 HETATM 24 C C71 E5Y . . . E 2 14.932 2.964 -17.457 1 55.59 ? C71 E5Y 401 B 1 HETATM 25 C C75 E5Y . . . E 2 16.252 3.764 -20.415 1 53.52 ? C75 E5Y 401 B 1 HETATM 26 N N1 E5Y . . . E 2 12.89 9.937 -22.434 1 53.9 ? N1 E5Y 401 B 1 HETATM 27 N N21 E5Y . . . E 2 16.247 9.964 -19.589 1 50.3 ? N21 E5Y 401 B 1 HETATM 28 N N3 E5Y . . . E 2 14.165 9.529 -22.198 1 51.31 ? N3 E5Y 401 B 1 HETATM 29 N N32 E5Y . . . E 2 15.555 6.202 -17.667 1 46.17 ? N32 E5Y 401 B 1 HETATM 30 N N37 E5Y . . . E 2 16.257 3.304 -17.971 1 54.21 ? N37 E5Y 401 B 1 HETATM 31 O O28 E5Y . . . E 2 14.65 9.799 -17.395 1 48.58 ? O28 E5Y 401 B 1 HETATM 32 O O42 E5Y . . . E 2 17.624 2.222 -15.168 1 67.5 ? O42 E5Y 401 B 1 HETATM 33 O O70 E5Y . . . E 2 18.482 3.027 -17.96 1 53.54 ? O70 E5Y 401 B 1 HETATM 34 O O79 E5Y . . . E 2 14.497 5.749 -19.591 1 56.18 ? O79 E5Y 401 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #