data_5QDE # _model_server_result.job_id WxqKfSAo-3MLRU7NrMdmIA _model_server_result.datetime_utc '2024-11-05 11:01:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QDE # _exptl.entry_id 5QDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDE _cell.length_a 89.839 _cell.length_b 89.839 _cell.length_c 106.494 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 368 n n C C2 TRS sing 369 n n C C3 TRS sing 370 n n C N TRS sing 371 n n C1 O1 TRS sing 372 n n C1 H11 TRS sing 373 n n C1 H12 TRS sing 374 n n C2 O2 TRS sing 375 n n C2 H21 TRS sing 376 n n C2 H22 TRS sing 377 n n C3 O3 TRS sing 378 n n C3 H31 TRS sing 379 n n C3 H32 TRS sing 380 n n N HN1 TRS sing 381 n n N HN2 TRS sing 382 n n N HN3 TRS sing 383 n n O1 HO1 TRS sing 384 n n O2 HO2 TRS sing 385 n n O3 HO3 TRS sing 386 n n # _atom_sites.entry_id 5QDE _atom_sites.fract_transf_matrix[1][1] 0.011131 _atom_sites.fract_transf_matrix[1][2] 0.006426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AWD A 1 401 1 AWD LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 180 HOH HOH . D 4 HOH A 2 502 231 HOH HOH . D 4 HOH A 3 503 216 HOH HOH . D 4 HOH A 4 504 164 HOH HOH . D 4 HOH A 5 505 196 HOH HOH . D 4 HOH A 6 506 245 HOH HOH . D 4 HOH A 7 507 181 HOH HOH . D 4 HOH A 8 508 136 HOH HOH . D 4 HOH A 9 509 191 HOH HOH . D 4 HOH A 10 510 160 HOH HOH . D 4 HOH A 11 511 264 HOH HOH . D 4 HOH A 12 512 146 HOH HOH . D 4 HOH A 13 513 159 HOH HOH . D 4 HOH A 14 514 103 HOH HOH . D 4 HOH A 15 515 233 HOH HOH . D 4 HOH A 16 516 205 HOH HOH . D 4 HOH A 17 517 172 HOH HOH . D 4 HOH A 18 518 123 HOH HOH . D 4 HOH A 19 519 59 HOH HOH . D 4 HOH A 20 520 127 HOH HOH . D 4 HOH A 21 521 89 HOH HOH . D 4 HOH A 22 522 104 HOH HOH . D 4 HOH A 23 523 130 HOH HOH . D 4 HOH A 24 524 186 HOH HOH . D 4 HOH A 25 525 22 HOH HOH . D 4 HOH A 26 526 20 HOH HOH . D 4 HOH A 27 527 70 HOH HOH . D 4 HOH A 28 528 249 HOH HOH . D 4 HOH A 29 529 134 HOH HOH . D 4 HOH A 30 530 211 HOH HOH . D 4 HOH A 31 531 102 HOH HOH . D 4 HOH A 32 532 40 HOH HOH . D 4 HOH A 33 533 26 HOH HOH . D 4 HOH A 34 534 11 HOH HOH . D 4 HOH A 35 535 91 HOH HOH . D 4 HOH A 36 536 3 HOH HOH . D 4 HOH A 37 537 120 HOH HOH . D 4 HOH A 38 538 214 HOH HOH . D 4 HOH A 39 539 190 HOH HOH . D 4 HOH A 40 540 5 HOH HOH . D 4 HOH A 41 541 111 HOH HOH . D 4 HOH A 42 542 14 HOH HOH . D 4 HOH A 43 543 60 HOH HOH . D 4 HOH A 44 544 77 HOH HOH . D 4 HOH A 45 545 18 HOH HOH . D 4 HOH A 46 546 4 HOH HOH . D 4 HOH A 47 547 94 HOH HOH . D 4 HOH A 48 548 151 HOH HOH . D 4 HOH A 49 549 58 HOH HOH . D 4 HOH A 50 550 100 HOH HOH . D 4 HOH A 51 551 173 HOH HOH . D 4 HOH A 52 552 44 HOH HOH . D 4 HOH A 53 553 152 HOH HOH . D 4 HOH A 54 554 142 HOH HOH . D 4 HOH A 55 555 121 HOH HOH . D 4 HOH A 56 556 139 HOH HOH . D 4 HOH A 57 557 135 HOH HOH . D 4 HOH A 58 558 107 HOH HOH . D 4 HOH A 59 559 38 HOH HOH . D 4 HOH A 60 560 13 HOH HOH . D 4 HOH A 61 561 122 HOH HOH . D 4 HOH A 62 562 63 HOH HOH . D 4 HOH A 63 563 167 HOH HOH . D 4 HOH A 64 564 27 HOH HOH . D 4 HOH A 65 565 46 HOH HOH . D 4 HOH A 66 566 150 HOH HOH . D 4 HOH A 67 567 1 HOH HOH . D 4 HOH A 68 568 80 HOH HOH . D 4 HOH A 69 569 78 HOH HOH . D 4 HOH A 70 570 25 HOH HOH . D 4 HOH A 71 571 234 HOH HOH . D 4 HOH A 72 572 32 HOH HOH . D 4 HOH A 73 573 55 HOH HOH . D 4 HOH A 74 574 209 HOH HOH . D 4 HOH A 75 575 69 HOH HOH . D 4 HOH A 76 576 170 HOH HOH . D 4 HOH A 77 577 155 HOH HOH . D 4 HOH A 78 578 24 HOH HOH . D 4 HOH A 79 579 8 HOH HOH . D 4 HOH A 80 580 12 HOH HOH . D 4 HOH A 81 581 6 HOH HOH . D 4 HOH A 82 582 76 HOH HOH . D 4 HOH A 83 583 83 HOH HOH . D 4 HOH A 84 584 54 HOH HOH . D 4 HOH A 85 585 16 HOH HOH . D 4 HOH A 86 586 148 HOH HOH . D 4 HOH A 87 587 68 HOH HOH . D 4 HOH A 88 588 28 HOH HOH . D 4 HOH A 89 589 184 HOH HOH . D 4 HOH A 90 590 9 HOH HOH . D 4 HOH A 91 591 95 HOH HOH . D 4 HOH A 92 592 97 HOH HOH . D 4 HOH A 93 593 45 HOH HOH . D 4 HOH A 94 594 140 HOH HOH . D 4 HOH A 95 595 10 HOH HOH . D 4 HOH A 96 596 265 HOH HOH . D 4 HOH A 97 597 42 HOH HOH . D 4 HOH A 98 598 57 HOH HOH . D 4 HOH A 99 599 7 HOH HOH . D 4 HOH A 100 600 109 HOH HOH . D 4 HOH A 101 601 43 HOH HOH . D 4 HOH A 102 602 82 HOH HOH . D 4 HOH A 103 603 189 HOH HOH . D 4 HOH A 104 604 112 HOH HOH . D 4 HOH A 105 605 2 HOH HOH . D 4 HOH A 106 606 219 HOH HOH . D 4 HOH A 107 607 47 HOH HOH . D 4 HOH A 108 608 31 HOH HOH . D 4 HOH A 109 609 62 HOH HOH . D 4 HOH A 110 610 144 HOH HOH . D 4 HOH A 111 611 37 HOH HOH . D 4 HOH A 112 612 128 HOH HOH . D 4 HOH A 113 613 117 HOH HOH . D 4 HOH A 114 614 177 HOH HOH . D 4 HOH A 115 615 132 HOH HOH . D 4 HOH A 116 616 17 HOH HOH . D 4 HOH A 117 617 227 HOH HOH . D 4 HOH A 118 618 34 HOH HOH . D 4 HOH A 119 619 61 HOH HOH . D 4 HOH A 120 620 19 HOH HOH . D 4 HOH A 121 621 99 HOH HOH . D 4 HOH A 122 622 33 HOH HOH . D 4 HOH A 123 623 84 HOH HOH . D 4 HOH A 124 624 137 HOH HOH . D 4 HOH A 125 625 73 HOH HOH . D 4 HOH A 126 626 199 HOH HOH . D 4 HOH A 127 627 174 HOH HOH . D 4 HOH A 128 628 241 HOH HOH . D 4 HOH A 129 629 53 HOH HOH . D 4 HOH A 130 630 239 HOH HOH . D 4 HOH A 131 631 41 HOH HOH . D 4 HOH A 132 632 93 HOH HOH . D 4 HOH A 133 633 154 HOH HOH . D 4 HOH A 134 634 220 HOH HOH . D 4 HOH A 135 635 218 HOH HOH . D 4 HOH A 136 636 194 HOH HOH . D 4 HOH A 137 637 101 HOH HOH . D 4 HOH A 138 638 110 HOH HOH . D 4 HOH A 139 639 23 HOH HOH . D 4 HOH A 140 640 96 HOH HOH . D 4 HOH A 141 641 176 HOH HOH . D 4 HOH A 142 642 238 HOH HOH . D 4 HOH A 143 643 124 HOH HOH . D 4 HOH A 144 644 35 HOH HOH . D 4 HOH A 145 645 236 HOH HOH . D 4 HOH A 146 646 153 HOH HOH . D 4 HOH A 147 647 21 HOH HOH . D 4 HOH A 148 648 131 HOH HOH . D 4 HOH A 149 649 113 HOH HOH . D 4 HOH A 150 650 147 HOH HOH . D 4 HOH A 151 651 188 HOH HOH . D 4 HOH A 152 652 50 HOH HOH . D 4 HOH A 153 653 232 HOH HOH . D 4 HOH A 154 654 114 HOH HOH . D 4 HOH A 155 655 161 HOH HOH . D 4 HOH A 156 656 118 HOH HOH . D 4 HOH A 157 657 105 HOH HOH . D 4 HOH A 158 658 51 HOH HOH . D 4 HOH A 159 659 226 HOH HOH . D 4 HOH A 160 660 195 HOH HOH . D 4 HOH A 161 661 222 HOH HOH . D 4 HOH A 162 662 72 HOH HOH . D 4 HOH A 163 663 52 HOH HOH . D 4 HOH A 164 664 198 HOH HOH . D 4 HOH A 165 665 175 HOH HOH . D 4 HOH A 166 666 15 HOH HOH . D 4 HOH A 167 667 39 HOH HOH . D 4 HOH A 168 668 145 HOH HOH . D 4 HOH A 169 669 86 HOH HOH . D 4 HOH A 170 670 92 HOH HOH . D 4 HOH A 171 671 79 HOH HOH . D 4 HOH A 172 672 36 HOH HOH . D 4 HOH A 173 673 49 HOH HOH . D 4 HOH A 174 674 87 HOH HOH . D 4 HOH A 175 675 85 HOH HOH . D 4 HOH A 176 676 266 HOH HOH . D 4 HOH A 177 677 229 HOH HOH . D 4 HOH A 178 678 138 HOH HOH . D 4 HOH A 179 679 65 HOH HOH . D 4 HOH A 180 680 81 HOH HOH . D 4 HOH A 181 681 259 HOH HOH . D 4 HOH A 182 682 260 HOH HOH . D 4 HOH A 183 683 158 HOH HOH . D 4 HOH A 184 684 108 HOH HOH . D 4 HOH A 185 685 157 HOH HOH . D 4 HOH A 186 686 162 HOH HOH . D 4 HOH A 187 687 156 HOH HOH . D 4 HOH A 188 688 75 HOH HOH . D 4 HOH A 189 689 223 HOH HOH . D 4 HOH A 190 690 67 HOH HOH . D 4 HOH A 191 691 255 HOH HOH . D 4 HOH A 192 692 115 HOH HOH . D 4 HOH A 193 693 29 HOH HOH . D 4 HOH A 194 694 201 HOH HOH . D 4 HOH A 195 695 240 HOH HOH . D 4 HOH A 196 696 133 HOH HOH . D 4 HOH A 197 697 66 HOH HOH . D 4 HOH A 198 698 262 HOH HOH . D 4 HOH A 199 699 217 HOH HOH . D 4 HOH A 200 700 257 HOH HOH . D 4 HOH A 201 701 169 HOH HOH . D 4 HOH A 202 702 225 HOH HOH . D 4 HOH A 203 703 183 HOH HOH . D 4 HOH A 204 704 237 HOH HOH . D 4 HOH A 205 705 208 HOH HOH . D 4 HOH A 206 706 48 HOH HOH . D 4 HOH A 207 707 56 HOH HOH . D 4 HOH A 208 708 256 HOH HOH . D 4 HOH A 209 709 171 HOH HOH . D 4 HOH A 210 710 250 HOH HOH . D 4 HOH A 211 711 126 HOH HOH . D 4 HOH A 212 712 258 HOH HOH . D 4 HOH A 213 713 166 HOH HOH . D 4 HOH A 214 714 203 HOH HOH . D 4 HOH A 215 715 261 HOH HOH . D 4 HOH A 216 716 71 HOH HOH . D 4 HOH A 217 717 98 HOH HOH . D 4 HOH A 218 718 30 HOH HOH . D 4 HOH A 219 719 244 HOH HOH . D 4 HOH A 220 720 74 HOH HOH . D 4 HOH A 221 721 119 HOH HOH . D 4 HOH A 222 722 252 HOH HOH . D 4 HOH A 223 723 116 HOH HOH . D 4 HOH A 224 724 204 HOH HOH . D 4 HOH A 225 725 242 HOH HOH . D 4 HOH A 226 726 254 HOH HOH . D 4 HOH A 227 727 263 HOH HOH . D 4 HOH A 228 728 125 HOH HOH . D 4 HOH A 229 729 253 HOH HOH . D 4 HOH A 230 730 200 HOH HOH . D 4 HOH A 231 731 243 HOH HOH . D 4 HOH A 232 732 193 HOH HOH . D 4 HOH A 233 733 168 HOH HOH . D 4 HOH A 234 734 106 HOH HOH . D 4 HOH A 235 735 178 HOH HOH . D 4 HOH A 236 736 235 HOH HOH . D 4 HOH A 237 737 141 HOH HOH . D 4 HOH A 238 738 248 HOH HOH . D 4 HOH A 239 739 64 HOH HOH . D 4 HOH A 240 740 210 HOH HOH . D 4 HOH A 241 741 88 HOH HOH . D 4 HOH A 242 742 182 HOH HOH . D 4 HOH A 243 743 192 HOH HOH . D 4 HOH A 244 744 224 HOH HOH . D 4 HOH A 245 745 212 HOH HOH . D 4 HOH A 246 746 149 HOH HOH . D 4 HOH A 247 747 207 HOH HOH . D 4 HOH A 248 748 129 HOH HOH . D 4 HOH A 249 749 228 HOH HOH . D 4 HOH A 250 750 246 HOH HOH . D 4 HOH A 251 751 179 HOH HOH . D 4 HOH A 252 752 185 HOH HOH . D 4 HOH A 253 753 90 HOH HOH . D 4 HOH A 254 754 187 HOH HOH . D 4 HOH A 255 755 202 HOH HOH . D 4 HOH A 256 756 165 HOH HOH . D 4 HOH A 257 757 197 HOH HOH . D 4 HOH A 258 758 251 HOH HOH . D 4 HOH A 259 759 163 HOH HOH . D 4 HOH A 260 760 215 HOH HOH . D 4 HOH A 261 761 206 HOH HOH . D 4 HOH A 262 762 247 HOH HOH . D 4 HOH A 263 763 143 HOH HOH . D 4 HOH A 264 764 221 HOH HOH . D 4 HOH A 265 765 213 HOH HOH . D 4 HOH A 266 766 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.795 -2.096 -4.896 1 17.72 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -44.993 -1.994 -3.966 1 42.8 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.157 -2.581 -6.262 1 98.65 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.728 -2.958 -4.304 1 69.11 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.217 -0.723 -5.004 1 60.67 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.181 -0.64 -3.633 1 62.53 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.167 -1.703 -6.73 1 46.35 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.504 -2.425 -3.07 1 29.91 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.804 -2.578 -3.063 1 51.36 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.88 -2.382 -4.471 1 51.36 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.523 -3.608 -6.198 1 118.38 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.275 -2.548 -6.905 1 118.38 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -43.054 -3.995 -4.199 1 82.94 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.806 -2.924 -4.888 1 82.94 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.949 -0.387 -4.064 1 72.8 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.382 -0.748 -5.611 1 72.8 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.92 -0.084 -5.41 1 72.8 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.941 -0.556 -3.041 1 75.03 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.442 -1.972 -7.617 1 55.62 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -43.085 -1.663 -2.938 1 35.89 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #