data_5QDG # _model_server_result.job_id 8mHceIf60fmVvaVa3oyt_Q _model_server_result.datetime_utc '2024-11-21 23:36:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QDG # _exptl.entry_id 5QDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDG _cell.length_a 89.866 _cell.length_b 89.866 _cell.length_c 106.583 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 367 n n C C2 TRS sing 368 n n C C3 TRS sing 369 n n C N TRS sing 370 n n C1 O1 TRS sing 371 n n C1 H11 TRS sing 372 n n C1 H12 TRS sing 373 n n C2 O2 TRS sing 374 n n C2 H21 TRS sing 375 n n C2 H22 TRS sing 376 n n C3 O3 TRS sing 377 n n C3 H31 TRS sing 378 n n C3 H32 TRS sing 379 n n N HN1 TRS sing 380 n n N HN2 TRS sing 381 n n N HN3 TRS sing 382 n n O1 HO1 TRS sing 383 n n O2 HO2 TRS sing 384 n n O3 HO3 TRS sing 385 n n # _atom_sites.entry_id 5QDG _atom_sites.fract_transf_matrix[1][1] 0.011128 _atom_sites.fract_transf_matrix[1][2] 0.006425 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AWS A 1 401 1 AWS LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 269 HOH HOH . D 4 HOH A 2 502 123 HOH HOH . D 4 HOH A 3 503 38 HOH HOH . D 4 HOH A 4 504 128 HOH HOH . D 4 HOH A 5 505 214 HOH HOH . D 4 HOH A 6 506 218 HOH HOH . D 4 HOH A 7 507 184 HOH HOH . D 4 HOH A 8 508 153 HOH HOH . D 4 HOH A 9 509 154 HOH HOH . D 4 HOH A 10 510 209 HOH HOH . D 4 HOH A 11 511 112 HOH HOH . D 4 HOH A 12 512 231 HOH HOH . D 4 HOH A 13 513 162 HOH HOH . D 4 HOH A 14 514 3 HOH HOH . D 4 HOH A 15 515 18 HOH HOH . D 4 HOH A 16 516 88 HOH HOH . D 4 HOH A 17 517 160 HOH HOH . D 4 HOH A 18 518 142 HOH HOH . D 4 HOH A 19 519 174 HOH HOH . D 4 HOH A 20 520 44 HOH HOH . D 4 HOH A 21 521 58 HOH HOH . D 4 HOH A 22 522 20 HOH HOH . D 4 HOH A 23 523 6 HOH HOH . D 4 HOH A 24 524 69 HOH HOH . D 4 HOH A 25 525 177 HOH HOH . D 4 HOH A 26 526 42 HOH HOH . D 4 HOH A 27 527 105 HOH HOH . D 4 HOH A 28 528 98 HOH HOH . D 4 HOH A 29 529 188 HOH HOH . D 4 HOH A 30 530 70 HOH HOH . D 4 HOH A 31 531 138 HOH HOH . D 4 HOH A 32 532 211 HOH HOH . D 4 HOH A 33 533 265 HOH HOH . D 4 HOH A 34 534 5 HOH HOH . D 4 HOH A 35 535 16 HOH HOH . D 4 HOH A 36 536 7 HOH HOH . D 4 HOH A 37 537 224 HOH HOH . D 4 HOH A 38 538 195 HOH HOH . D 4 HOH A 39 539 252 HOH HOH . D 4 HOH A 40 540 258 HOH HOH . D 4 HOH A 41 541 4 HOH HOH . D 4 HOH A 42 542 182 HOH HOH . D 4 HOH A 43 543 95 HOH HOH . D 4 HOH A 44 544 125 HOH HOH . D 4 HOH A 45 545 92 HOH HOH . D 4 HOH A 46 546 107 HOH HOH . D 4 HOH A 47 547 83 HOH HOH . D 4 HOH A 48 548 143 HOH HOH . D 4 HOH A 49 549 31 HOH HOH . D 4 HOH A 50 550 80 HOH HOH . D 4 HOH A 51 551 57 HOH HOH . D 4 HOH A 52 552 116 HOH HOH . D 4 HOH A 53 553 68 HOH HOH . D 4 HOH A 54 554 77 HOH HOH . D 4 HOH A 55 555 11 HOH HOH . D 4 HOH A 56 556 210 HOH HOH . D 4 HOH A 57 557 194 HOH HOH . D 4 HOH A 58 558 133 HOH HOH . D 4 HOH A 59 559 78 HOH HOH . D 4 HOH A 60 560 147 HOH HOH . D 4 HOH A 61 561 255 HOH HOH . D 4 HOH A 62 562 36 HOH HOH . D 4 HOH A 63 563 52 HOH HOH . D 4 HOH A 64 564 13 HOH HOH . D 4 HOH A 65 565 9 HOH HOH . D 4 HOH A 66 566 267 HOH HOH . D 4 HOH A 67 567 127 HOH HOH . D 4 HOH A 68 568 271 HOH HOH . D 4 HOH A 69 569 29 HOH HOH . D 4 HOH A 70 570 14 HOH HOH . D 4 HOH A 71 571 216 HOH HOH . D 4 HOH A 72 572 25 HOH HOH . D 4 HOH A 73 573 115 HOH HOH . D 4 HOH A 74 574 190 HOH HOH . D 4 HOH A 75 575 24 HOH HOH . D 4 HOH A 76 576 159 HOH HOH . D 4 HOH A 77 577 85 HOH HOH . D 4 HOH A 78 578 63 HOH HOH . D 4 HOH A 79 579 54 HOH HOH . D 4 HOH A 80 580 1 HOH HOH . D 4 HOH A 81 581 41 HOH HOH . D 4 HOH A 82 582 59 HOH HOH . D 4 HOH A 83 583 30 HOH HOH . D 4 HOH A 84 584 12 HOH HOH . D 4 HOH A 85 585 23 HOH HOH . D 4 HOH A 86 586 103 HOH HOH . D 4 HOH A 87 587 35 HOH HOH . D 4 HOH A 88 588 8 HOH HOH . D 4 HOH A 89 589 276 HOH HOH . D 4 HOH A 90 590 120 HOH HOH . D 4 HOH A 91 591 40 HOH HOH . D 4 HOH A 92 592 113 HOH HOH . D 4 HOH A 93 593 15 HOH HOH . D 4 HOH A 94 594 220 HOH HOH . D 4 HOH A 95 595 22 HOH HOH . D 4 HOH A 96 596 122 HOH HOH . D 4 HOH A 97 597 47 HOH HOH . D 4 HOH A 98 598 111 HOH HOH . D 4 HOH A 99 599 10 HOH HOH . D 4 HOH A 100 600 43 HOH HOH . D 4 HOH A 101 601 226 HOH HOH . D 4 HOH A 102 602 66 HOH HOH . D 4 HOH A 103 603 135 HOH HOH . D 4 HOH A 104 604 241 HOH HOH . D 4 HOH A 105 605 187 HOH HOH . D 4 HOH A 106 606 26 HOH HOH . D 4 HOH A 107 607 73 HOH HOH . D 4 HOH A 108 608 171 HOH HOH . D 4 HOH A 109 609 82 HOH HOH . D 4 HOH A 110 610 93 HOH HOH . D 4 HOH A 111 611 61 HOH HOH . D 4 HOH A 112 612 2 HOH HOH . D 4 HOH A 113 613 167 HOH HOH . D 4 HOH A 114 614 117 HOH HOH . D 4 HOH A 115 615 185 HOH HOH . D 4 HOH A 116 616 141 HOH HOH . D 4 HOH A 117 617 243 HOH HOH . D 4 HOH A 118 618 186 HOH HOH . D 4 HOH A 119 619 158 HOH HOH . D 4 HOH A 120 620 173 HOH HOH . D 4 HOH A 121 621 244 HOH HOH . D 4 HOH A 122 622 32 HOH HOH . D 4 HOH A 123 623 56 HOH HOH . D 4 HOH A 124 624 53 HOH HOH . D 4 HOH A 125 625 39 HOH HOH . D 4 HOH A 126 626 99 HOH HOH . D 4 HOH A 127 627 223 HOH HOH . D 4 HOH A 128 628 97 HOH HOH . D 4 HOH A 129 629 75 HOH HOH . D 4 HOH A 130 630 146 HOH HOH . D 4 HOH A 131 631 81 HOH HOH . D 4 HOH A 132 632 60 HOH HOH . D 4 HOH A 133 633 232 HOH HOH . D 4 HOH A 134 634 114 HOH HOH . D 4 HOH A 135 635 228 HOH HOH . D 4 HOH A 136 636 109 HOH HOH . D 4 HOH A 137 637 196 HOH HOH . D 4 HOH A 138 638 235 HOH HOH . D 4 HOH A 139 639 233 HOH HOH . D 4 HOH A 140 640 126 HOH HOH . D 4 HOH A 141 641 17 HOH HOH . D 4 HOH A 142 642 106 HOH HOH . D 4 HOH A 143 643 21 HOH HOH . D 4 HOH A 144 644 108 HOH HOH . D 4 HOH A 145 645 101 HOH HOH . D 4 HOH A 146 646 86 HOH HOH . D 4 HOH A 147 647 49 HOH HOH . D 4 HOH A 148 648 192 HOH HOH . D 4 HOH A 149 649 137 HOH HOH . D 4 HOH A 150 650 33 HOH HOH . D 4 HOH A 151 651 230 HOH HOH . D 4 HOH A 152 652 148 HOH HOH . D 4 HOH A 153 653 207 HOH HOH . D 4 HOH A 154 654 139 HOH HOH . D 4 HOH A 155 655 145 HOH HOH . D 4 HOH A 156 656 257 HOH HOH . D 4 HOH A 157 657 46 HOH HOH . D 4 HOH A 158 658 183 HOH HOH . D 4 HOH A 159 659 247 HOH HOH . D 4 HOH A 160 660 19 HOH HOH . D 4 HOH A 161 661 217 HOH HOH . D 4 HOH A 162 662 250 HOH HOH . D 4 HOH A 163 663 144 HOH HOH . D 4 HOH A 164 664 50 HOH HOH . D 4 HOH A 165 665 79 HOH HOH . D 4 HOH A 166 666 130 HOH HOH . D 4 HOH A 167 667 34 HOH HOH . D 4 HOH A 168 668 96 HOH HOH . D 4 HOH A 169 669 266 HOH HOH . D 4 HOH A 170 670 91 HOH HOH . D 4 HOH A 171 671 48 HOH HOH . D 4 HOH A 172 672 129 HOH HOH . D 4 HOH A 173 673 178 HOH HOH . D 4 HOH A 174 674 90 HOH HOH . D 4 HOH A 175 675 37 HOH HOH . D 4 HOH A 176 676 110 HOH HOH . D 4 HOH A 177 677 121 HOH HOH . D 4 HOH A 178 678 72 HOH HOH . D 4 HOH A 179 679 65 HOH HOH . D 4 HOH A 180 680 151 HOH HOH . D 4 HOH A 181 681 149 HOH HOH . D 4 HOH A 182 682 51 HOH HOH . D 4 HOH A 183 683 84 HOH HOH . D 4 HOH A 184 684 225 HOH HOH . D 4 HOH A 185 685 215 HOH HOH . D 4 HOH A 186 686 94 HOH HOH . D 4 HOH A 187 687 197 HOH HOH . D 4 HOH A 188 688 62 HOH HOH . D 4 HOH A 189 689 104 HOH HOH . D 4 HOH A 190 690 155 HOH HOH . D 4 HOH A 191 691 238 HOH HOH . D 4 HOH A 192 692 27 HOH HOH . D 4 HOH A 193 693 246 HOH HOH . D 4 HOH A 194 694 74 HOH HOH . D 4 HOH A 195 695 124 HOH HOH . D 4 HOH A 196 696 45 HOH HOH . D 4 HOH A 197 697 170 HOH HOH . D 4 HOH A 198 698 67 HOH HOH . D 4 HOH A 199 699 253 HOH HOH . D 4 HOH A 200 700 181 HOH HOH . D 4 HOH A 201 701 263 HOH HOH . D 4 HOH A 202 702 175 HOH HOH . D 4 HOH A 203 703 259 HOH HOH . D 4 HOH A 204 704 163 HOH HOH . D 4 HOH A 205 705 152 HOH HOH . D 4 HOH A 206 706 234 HOH HOH . D 4 HOH A 207 707 55 HOH HOH . D 4 HOH A 208 708 200 HOH HOH . D 4 HOH A 209 709 131 HOH HOH . D 4 HOH A 210 710 221 HOH HOH . D 4 HOH A 211 711 76 HOH HOH . D 4 HOH A 212 712 198 HOH HOH . D 4 HOH A 213 713 237 HOH HOH . D 4 HOH A 214 714 100 HOH HOH . D 4 HOH A 215 715 179 HOH HOH . D 4 HOH A 216 716 71 HOH HOH . D 4 HOH A 217 717 164 HOH HOH . D 4 HOH A 218 718 204 HOH HOH . D 4 HOH A 219 719 180 HOH HOH . D 4 HOH A 220 720 28 HOH HOH . D 4 HOH A 221 721 229 HOH HOH . D 4 HOH A 222 722 150 HOH HOH . D 4 HOH A 223 723 208 HOH HOH . D 4 HOH A 224 724 242 HOH HOH . D 4 HOH A 225 725 212 HOH HOH . D 4 HOH A 226 726 118 HOH HOH . D 4 HOH A 227 727 189 HOH HOH . D 4 HOH A 228 728 264 HOH HOH . D 4 HOH A 229 729 205 HOH HOH . D 4 HOH A 230 730 261 HOH HOH . D 4 HOH A 231 731 272 HOH HOH . D 4 HOH A 232 732 199 HOH HOH . D 4 HOH A 233 733 240 HOH HOH . D 4 HOH A 234 734 248 HOH HOH . D 4 HOH A 235 735 256 HOH HOH . D 4 HOH A 236 736 102 HOH HOH . D 4 HOH A 237 737 260 HOH HOH . D 4 HOH A 238 738 239 HOH HOH . D 4 HOH A 239 739 251 HOH HOH . D 4 HOH A 240 740 245 HOH HOH . D 4 HOH A 241 741 132 HOH HOH . D 4 HOH A 242 742 262 HOH HOH . D 4 HOH A 243 743 140 HOH HOH . D 4 HOH A 244 744 236 HOH HOH . D 4 HOH A 245 745 176 HOH HOH . D 4 HOH A 246 746 64 HOH HOH . D 4 HOH A 247 747 254 HOH HOH . D 4 HOH A 248 748 87 HOH HOH . D 4 HOH A 249 749 213 HOH HOH . D 4 HOH A 250 750 169 HOH HOH . D 4 HOH A 251 751 156 HOH HOH . D 4 HOH A 252 752 227 HOH HOH . D 4 HOH A 253 753 202 HOH HOH . D 4 HOH A 254 754 275 HOH HOH . D 4 HOH A 255 755 249 HOH HOH . D 4 HOH A 256 756 134 HOH HOH . D 4 HOH A 257 757 166 HOH HOH . D 4 HOH A 258 758 201 HOH HOH . D 4 HOH A 259 759 206 HOH HOH . D 4 HOH A 260 760 119 HOH HOH . D 4 HOH A 261 761 203 HOH HOH . D 4 HOH A 262 762 161 HOH HOH . D 4 HOH A 263 763 193 HOH HOH . D 4 HOH A 264 764 172 HOH HOH . D 4 HOH A 265 765 89 HOH HOH . D 4 HOH A 266 766 270 HOH HOH . D 4 HOH A 267 767 273 HOH HOH . D 4 HOH A 268 768 274 HOH HOH . D 4 HOH A 269 769 268 HOH HOH . D 4 HOH A 270 770 165 HOH HOH . D 4 HOH A 271 771 168 HOH HOH . D 4 HOH A 272 772 157 HOH HOH . D 4 HOH A 273 773 136 HOH HOH . D 4 HOH A 274 774 222 HOH HOH . D 4 HOH A 275 775 219 HOH HOH . D 4 HOH A 276 776 277 HOH HOH . D 4 HOH A 277 777 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.744 -2.05 -4.895 1 19.61 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -44.941 -1.964 -3.956 1 45.2 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.124 -2.542 -6.255 1 105.31 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.673 -2.919 -4.329 1 71.86 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.169 -0.672 -5.024 1 53.36 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.147 -0.628 -3.58 1 62.74 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.169 -1.697 -6.715 1 49.33 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.474 -2.385 -3.1 1 30.12 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.75 -2.567 -3.066 1 54.24 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.831 -2.34 -4.465 1 54.24 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.463 -3.578 -6.186 1 126.37 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.258 -2.486 -6.917 1 126.37 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -42.985 -3.961 -4.227 1 86.23 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.745 -2.871 -4.901 1 86.23 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.878 -0.332 -4.093 1 64.03 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.35 -0.698 -5.653 1 64.03 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.883 -0.036 -5.415 1 64.03 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.907 -0.574 -2.984 1 75.29 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.448 -1.98 -7.596 1 59.19 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -43.068 -1.632 -2.976 1 36.14 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #