data_5QDI # _model_server_result.job_id Z5YMnnBlx_YFslY32KqHIw _model_server_result.datetime_utc '2024-11-05 10:41:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5QDI # _exptl.entry_id 5QDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDI _cell.length_a 89.877 _cell.length_b 89.877 _cell.length_c 106.634 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 360 n n C C2 TRS sing 361 n n C C3 TRS sing 362 n n C N TRS sing 363 n n C1 O1 TRS sing 364 n n C1 H11 TRS sing 365 n n C1 H12 TRS sing 366 n n C2 O2 TRS sing 367 n n C2 H21 TRS sing 368 n n C2 H22 TRS sing 369 n n C3 O3 TRS sing 370 n n C3 H31 TRS sing 371 n n C3 H32 TRS sing 372 n n N HN1 TRS sing 373 n n N HN2 TRS sing 374 n n N HN3 TRS sing 375 n n O1 HO1 TRS sing 376 n n O2 HO2 TRS sing 377 n n O3 HO3 TRS sing 378 n n # _atom_sites.entry_id 5QDI _atom_sites.fract_transf_matrix[1][1] 0.011126 _atom_sites.fract_transf_matrix[1][2] 0.006424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JFM A 1 401 1 JFM LIG . C 2 JFM A 1 402 2 JFM LIG . D 3 TRS A 1 403 500 TRS TRS . E 4 HOH A 1 501 198 HOH HOH . E 4 HOH A 2 502 252 HOH HOH . E 4 HOH A 3 503 149 HOH HOH . E 4 HOH A 4 504 159 HOH HOH . E 4 HOH A 5 505 164 HOH HOH . E 4 HOH A 6 506 39 HOH HOH . E 4 HOH A 7 507 170 HOH HOH . E 4 HOH A 8 508 119 HOH HOH . E 4 HOH A 9 509 5 HOH HOH . E 4 HOH A 10 510 132 HOH HOH . E 4 HOH A 11 511 58 HOH HOH . E 4 HOH A 12 512 64 HOH HOH . E 4 HOH A 13 513 152 HOH HOH . E 4 HOH A 14 514 144 HOH HOH . E 4 HOH A 15 515 177 HOH HOH . E 4 HOH A 16 516 76 HOH HOH . E 4 HOH A 17 517 133 HOH HOH . E 4 HOH A 18 518 60 HOH HOH . E 4 HOH A 19 519 68 HOH HOH . E 4 HOH A 20 520 48 HOH HOH . E 4 HOH A 21 521 130 HOH HOH . E 4 HOH A 22 522 181 HOH HOH . E 4 HOH A 23 523 110 HOH HOH . E 4 HOH A 24 524 59 HOH HOH . E 4 HOH A 25 525 125 HOH HOH . E 4 HOH A 26 526 191 HOH HOH . E 4 HOH A 27 527 227 HOH HOH . E 4 HOH A 28 528 21 HOH HOH . E 4 HOH A 29 529 129 HOH HOH . E 4 HOH A 30 530 151 HOH HOH . E 4 HOH A 31 531 116 HOH HOH . E 4 HOH A 32 532 115 HOH HOH . E 4 HOH A 33 533 85 HOH HOH . E 4 HOH A 34 534 258 HOH HOH . E 4 HOH A 35 535 94 HOH HOH . E 4 HOH A 36 536 19 HOH HOH . E 4 HOH A 37 537 163 HOH HOH . E 4 HOH A 38 538 93 HOH HOH . E 4 HOH A 39 539 237 HOH HOH . E 4 HOH A 40 540 104 HOH HOH . E 4 HOH A 41 541 120 HOH HOH . E 4 HOH A 42 542 73 HOH HOH . E 4 HOH A 43 543 137 HOH HOH . E 4 HOH A 44 544 86 HOH HOH . E 4 HOH A 45 545 40 HOH HOH . E 4 HOH A 46 546 179 HOH HOH . E 4 HOH A 47 547 256 HOH HOH . E 4 HOH A 48 548 17 HOH HOH . E 4 HOH A 49 549 131 HOH HOH . E 4 HOH A 50 550 27 HOH HOH . E 4 HOH A 51 551 194 HOH HOH . E 4 HOH A 52 552 99 HOH HOH . E 4 HOH A 53 553 160 HOH HOH . E 4 HOH A 54 554 105 HOH HOH . E 4 HOH A 55 555 147 HOH HOH . E 4 HOH A 56 556 25 HOH HOH . E 4 HOH A 57 557 140 HOH HOH . E 4 HOH A 58 558 243 HOH HOH . E 4 HOH A 59 559 26 HOH HOH . E 4 HOH A 60 560 14 HOH HOH . E 4 HOH A 61 561 7 HOH HOH . E 4 HOH A 62 562 23 HOH HOH . E 4 HOH A 63 563 1 HOH HOH . E 4 HOH A 64 564 6 HOH HOH . E 4 HOH A 65 565 249 HOH HOH . E 4 HOH A 66 566 168 HOH HOH . E 4 HOH A 67 567 197 HOH HOH . E 4 HOH A 68 568 189 HOH HOH . E 4 HOH A 69 569 4 HOH HOH . E 4 HOH A 70 570 33 HOH HOH . E 4 HOH A 71 571 188 HOH HOH . E 4 HOH A 72 572 43 HOH HOH . E 4 HOH A 73 573 30 HOH HOH . E 4 HOH A 74 574 108 HOH HOH . E 4 HOH A 75 575 41 HOH HOH . E 4 HOH A 76 576 107 HOH HOH . E 4 HOH A 77 577 92 HOH HOH . E 4 HOH A 78 578 165 HOH HOH . E 4 HOH A 79 579 11 HOH HOH . E 4 HOH A 80 580 81 HOH HOH . E 4 HOH A 81 581 37 HOH HOH . E 4 HOH A 82 582 80 HOH HOH . E 4 HOH A 83 583 8 HOH HOH . E 4 HOH A 84 584 230 HOH HOH . E 4 HOH A 85 585 95 HOH HOH . E 4 HOH A 86 586 3 HOH HOH . E 4 HOH A 87 587 13 HOH HOH . E 4 HOH A 88 588 24 HOH HOH . E 4 HOH A 89 589 12 HOH HOH . E 4 HOH A 90 590 221 HOH HOH . E 4 HOH A 91 591 123 HOH HOH . E 4 HOH A 92 592 69 HOH HOH . E 4 HOH A 93 593 10 HOH HOH . E 4 HOH A 94 594 114 HOH HOH . E 4 HOH A 95 595 55 HOH HOH . E 4 HOH A 96 596 205 HOH HOH . E 4 HOH A 97 597 173 HOH HOH . E 4 HOH A 98 598 83 HOH HOH . E 4 HOH A 99 599 118 HOH HOH . E 4 HOH A 100 600 89 HOH HOH . E 4 HOH A 101 601 220 HOH HOH . E 4 HOH A 102 602 127 HOH HOH . E 4 HOH A 103 603 138 HOH HOH . E 4 HOH A 104 604 218 HOH HOH . E 4 HOH A 105 605 72 HOH HOH . E 4 HOH A 106 606 102 HOH HOH . E 4 HOH A 107 607 82 HOH HOH . E 4 HOH A 108 608 97 HOH HOH . E 4 HOH A 109 609 9 HOH HOH . E 4 HOH A 110 610 2 HOH HOH . E 4 HOH A 111 611 62 HOH HOH . E 4 HOH A 112 612 79 HOH HOH . E 4 HOH A 113 613 32 HOH HOH . E 4 HOH A 114 614 61 HOH HOH . E 4 HOH A 115 615 54 HOH HOH . E 4 HOH A 116 616 96 HOH HOH . E 4 HOH A 117 617 42 HOH HOH . E 4 HOH A 118 618 103 HOH HOH . E 4 HOH A 119 619 235 HOH HOH . E 4 HOH A 120 620 71 HOH HOH . E 4 HOH A 121 621 153 HOH HOH . E 4 HOH A 122 622 18 HOH HOH . E 4 HOH A 123 623 36 HOH HOH . E 4 HOH A 124 624 35 HOH HOH . E 4 HOH A 125 625 101 HOH HOH . E 4 HOH A 126 626 193 HOH HOH . E 4 HOH A 127 627 45 HOH HOH . E 4 HOH A 128 628 16 HOH HOH . E 4 HOH A 129 629 248 HOH HOH . E 4 HOH A 130 630 31 HOH HOH . E 4 HOH A 131 631 259 HOH HOH . E 4 HOH A 132 632 254 HOH HOH . E 4 HOH A 133 633 38 HOH HOH . E 4 HOH A 134 634 98 HOH HOH . E 4 HOH A 135 635 47 HOH HOH . E 4 HOH A 136 636 50 HOH HOH . E 4 HOH A 137 637 143 HOH HOH . E 4 HOH A 138 638 182 HOH HOH . E 4 HOH A 139 639 84 HOH HOH . E 4 HOH A 140 640 217 HOH HOH . E 4 HOH A 141 641 156 HOH HOH . E 4 HOH A 142 642 57 HOH HOH . E 4 HOH A 143 643 169 HOH HOH . E 4 HOH A 144 644 155 HOH HOH . E 4 HOH A 145 645 22 HOH HOH . E 4 HOH A 146 646 34 HOH HOH . E 4 HOH A 147 647 46 HOH HOH . E 4 HOH A 148 648 106 HOH HOH . E 4 HOH A 149 649 53 HOH HOH . E 4 HOH A 150 650 154 HOH HOH . E 4 HOH A 151 651 241 HOH HOH . E 4 HOH A 152 652 44 HOH HOH . E 4 HOH A 153 653 109 HOH HOH . E 4 HOH A 154 654 212 HOH HOH . E 4 HOH A 155 655 211 HOH HOH . E 4 HOH A 156 656 126 HOH HOH . E 4 HOH A 157 657 185 HOH HOH . E 4 HOH A 158 658 20 HOH HOH . E 4 HOH A 159 659 51 HOH HOH . E 4 HOH A 160 660 15 HOH HOH . E 4 HOH A 161 661 87 HOH HOH . E 4 HOH A 162 662 88 HOH HOH . E 4 HOH A 163 663 195 HOH HOH . E 4 HOH A 164 664 75 HOH HOH . E 4 HOH A 165 665 113 HOH HOH . E 4 HOH A 166 666 226 HOH HOH . E 4 HOH A 167 667 228 HOH HOH . E 4 HOH A 168 668 253 HOH HOH . E 4 HOH A 169 669 52 HOH HOH . E 4 HOH A 170 670 250 HOH HOH . E 4 HOH A 171 671 67 HOH HOH . E 4 HOH A 172 672 134 HOH HOH . E 4 HOH A 173 673 90 HOH HOH . E 4 HOH A 174 674 112 HOH HOH . E 4 HOH A 175 675 232 HOH HOH . E 4 HOH A 176 676 145 HOH HOH . E 4 HOH A 177 677 49 HOH HOH . E 4 HOH A 178 678 70 HOH HOH . E 4 HOH A 179 679 192 HOH HOH . E 4 HOH A 180 680 161 HOH HOH . E 4 HOH A 181 681 78 HOH HOH . E 4 HOH A 182 682 135 HOH HOH . E 4 HOH A 183 683 111 HOH HOH . E 4 HOH A 184 684 246 HOH HOH . E 4 HOH A 185 685 162 HOH HOH . E 4 HOH A 186 686 157 HOH HOH . E 4 HOH A 187 687 28 HOH HOH . E 4 HOH A 188 688 183 HOH HOH . E 4 HOH A 189 689 148 HOH HOH . E 4 HOH A 190 690 187 HOH HOH . E 4 HOH A 191 691 158 HOH HOH . E 4 HOH A 192 692 56 HOH HOH . E 4 HOH A 193 693 245 HOH HOH . E 4 HOH A 194 694 128 HOH HOH . E 4 HOH A 195 695 247 HOH HOH . E 4 HOH A 196 696 242 HOH HOH . E 4 HOH A 197 697 229 HOH HOH . E 4 HOH A 198 698 201 HOH HOH . E 4 HOH A 199 699 176 HOH HOH . E 4 HOH A 200 700 208 HOH HOH . E 4 HOH A 201 701 63 HOH HOH . E 4 HOH A 202 702 233 HOH HOH . E 4 HOH A 203 703 207 HOH HOH . E 4 HOH A 204 704 260 HOH HOH . E 4 HOH A 205 705 215 HOH HOH . E 4 HOH A 206 706 209 HOH HOH . E 4 HOH A 207 707 213 HOH HOH . E 4 HOH A 208 708 180 HOH HOH . E 4 HOH A 209 709 171 HOH HOH . E 4 HOH A 210 710 29 HOH HOH . E 4 HOH A 211 711 175 HOH HOH . E 4 HOH A 212 712 100 HOH HOH . E 4 HOH A 213 713 236 HOH HOH . E 4 HOH A 214 714 261 HOH HOH . E 4 HOH A 215 715 196 HOH HOH . E 4 HOH A 216 716 257 HOH HOH . E 4 HOH A 217 717 77 HOH HOH . E 4 HOH A 218 718 122 HOH HOH . E 4 HOH A 219 719 117 HOH HOH . E 4 HOH A 220 720 74 HOH HOH . E 4 HOH A 221 721 121 HOH HOH . E 4 HOH A 222 722 124 HOH HOH . E 4 HOH A 223 723 199 HOH HOH . E 4 HOH A 224 724 142 HOH HOH . E 4 HOH A 225 725 136 HOH HOH . E 4 HOH A 226 726 91 HOH HOH . E 4 HOH A 227 727 166 HOH HOH . E 4 HOH A 228 728 240 HOH HOH . E 4 HOH A 229 729 239 HOH HOH . E 4 HOH A 230 730 216 HOH HOH . E 4 HOH A 231 731 139 HOH HOH . E 4 HOH A 232 732 186 HOH HOH . E 4 HOH A 233 733 255 HOH HOH . E 4 HOH A 234 734 251 HOH HOH . E 4 HOH A 235 735 65 HOH HOH . E 4 HOH A 236 736 200 HOH HOH . E 4 HOH A 237 737 202 HOH HOH . E 4 HOH A 238 738 146 HOH HOH . E 4 HOH A 239 739 210 HOH HOH . E 4 HOH A 240 740 204 HOH HOH . E 4 HOH A 241 741 174 HOH HOH . E 4 HOH A 242 742 222 HOH HOH . E 4 HOH A 243 743 234 HOH HOH . E 4 HOH A 244 744 184 HOH HOH . E 4 HOH A 245 745 150 HOH HOH . E 4 HOH A 246 746 244 HOH HOH . E 4 HOH A 247 747 219 HOH HOH . E 4 HOH A 248 748 203 HOH HOH . E 4 HOH A 249 749 167 HOH HOH . E 4 HOH A 250 750 178 HOH HOH . E 4 HOH A 251 751 225 HOH HOH . E 4 HOH A 252 752 172 HOH HOH . E 4 HOH A 253 753 66 HOH HOH . E 4 HOH A 254 754 231 HOH HOH . E 4 HOH A 255 755 224 HOH HOH . E 4 HOH A 256 756 190 HOH HOH . E 4 HOH A 257 757 206 HOH HOH . E 4 HOH A 258 758 141 HOH HOH . E 4 HOH A 259 759 223 HOH HOH . E 4 HOH A 260 760 238 HOH HOH . E 4 HOH A 261 761 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 -43.753 -2.108 -4.979 1 18.35 ? C TRS 403 A 1 HETATM 2 C C1 TRS . . . D 3 -44.932 -1.996 -4.035 1 46.53 ? C1 TRS 403 A 1 HETATM 3 C C2 TRS . . . D 3 -44.107 -2.57 -6.353 1 80.29 ? C2 TRS 403 A 1 HETATM 4 C C3 TRS . . . D 3 -42.644 -2.913 -4.369 1 64.42 ? C3 TRS 403 A 1 HETATM 5 N N TRS . . . D 3 -43.185 -0.709 -5.088 1 46.02 ? N TRS 403 A 1 HETATM 6 O O1 TRS . . . D 3 -45.146 -0.658 -3.703 1 70.11 ? O1 TRS 403 A 1 HETATM 7 O O2 TRS . . . D 3 -45.143 -1.717 -6.787 1 48.31 ? O2 TRS 403 A 1 HETATM 8 O O3 TRS . . . D 3 -42.411 -2.415 -3.134 1 36.7 ? O3 TRS 403 A 1 HETATM 9 H H11 TRS . . . D 3 -44.726 -2.565 -3.126 1 55.84 ? H11 TRS 403 A 1 HETATM 10 H H12 TRS . . . D 3 -45.825 -2.395 -4.52 1 55.84 ? H12 TRS 403 A 1 HETATM 11 H H21 TRS . . . D 3 -44.439 -3.61 -6.313 1 96.35 ? H21 TRS 403 A 1 HETATM 12 H H22 TRS . . . D 3 -43.231 -2.492 -7 1 96.35 ? H22 TRS 403 A 1 HETATM 13 H H31 TRS . . . D 3 -42.934 -3.963 -4.289 1 77.3 ? H31 TRS 403 A 1 HETATM 14 H H32 TRS . . . D 3 -41.737 -2.831 -4.972 1 77.3 ? H32 TRS 403 A 1 HETATM 15 H HN1 TRS . . . D 3 -42.931 -0.366 -4.147 1 55.23 ? HN1 TRS 403 A 1 HETATM 16 H HN2 TRS . . . D 3 -42.344 -0.725 -5.687 1 55.23 ? HN2 TRS 403 A 1 HETATM 17 H HN3 TRS . . . D 3 -43.892 -0.082 -5.504 1 55.23 ? HN3 TRS 403 A 1 HETATM 18 H HO1 TRS . . . D 3 -45.899 -0.592 -3.101 1 84.13 ? HO1 TRS 403 A 1 HETATM 19 H HO2 TRS . . . D 3 -45.416 -1.97 -7.679 1 57.98 ? HO2 TRS 403 A 1 HETATM 20 H HO3 TRS . . . D 3 -43.012 -1.677 -2.965 1 44.04 ? HO3 TRS 403 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #