data_5QDL
#
_model_server_result.job_id            uoI2I_WUbE5u9hccoePm1Q 
_model_server_result.datetime_utc      '2024-11-08 01:26:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qdl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5QDL 
#
_exptl.entry_id    5QDL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5QDL 
_cell.length_a            89.894 
_cell.length_b            89.894 
_cell.length_c            106.487 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QDL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 366 n n 
C C2 TRS sing 367 n n 
C C3 TRS sing 368 n n 
C N TRS sing 369 n n 
C1 O1 TRS sing 370 n n 
C1 H11 TRS sing 371 n n 
C1 H12 TRS sing 372 n n 
C2 O2 TRS sing 373 n n 
C2 H21 TRS sing 374 n n 
C2 H22 TRS sing 375 n n 
C3 O3 TRS sing 376 n n 
C3 H31 TRS sing 377 n n 
C3 H32 TRS sing 378 n n 
N HN1 TRS sing 379 n n 
N HN2 TRS sing 380 n n 
N HN3 TRS sing 381 n n 
O1 HO1 TRS sing 382 n n 
O2 HO2 TRS sing 383 n n 
O3 HO3 TRS sing 384 n n 
#
_atom_sites.entry_id                     5QDL 
_atom_sites.fract_transf_matrix[1][1]    0.011124 
_atom_sites.fract_transf_matrix[1][2]    0.006423 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 JFV A 1 401 1 JFV LIG . 
C 3 TRS A 1 402 500 TRS TRS . 
D 4 HOH A 1 501 159 HOH HOH . 
D 4 HOH A 2 502 148 HOH HOH . 
D 4 HOH A 3 503 128 HOH HOH . 
D 4 HOH A 4 504 212 HOH HOH . 
D 4 HOH A 5 505 143 HOH HOH . 
D 4 HOH A 6 506 177 HOH HOH . 
D 4 HOH A 7 507 105 HOH HOH . 
D 4 HOH A 8 508 195 HOH HOH . 
D 4 HOH A 9 509 138 HOH HOH . 
D 4 HOH A 10 510 25 HOH HOH . 
D 4 HOH A 11 511 119 HOH HOH . 
D 4 HOH A 12 512 95 HOH HOH . 
D 4 HOH A 13 513 204 HOH HOH . 
D 4 HOH A 14 514 80 HOH HOH . 
D 4 HOH A 15 515 19 HOH HOH . 
D 4 HOH A 16 516 157 HOH HOH . 
D 4 HOH A 17 517 53 HOH HOH . 
D 4 HOH A 18 518 158 HOH HOH . 
D 4 HOH A 19 519 213 HOH HOH . 
D 4 HOH A 20 520 65 HOH HOH . 
D 4 HOH A 21 521 17 HOH HOH . 
D 4 HOH A 22 522 165 HOH HOH . 
D 4 HOH A 23 523 117 HOH HOH . 
D 4 HOH A 24 524 37 HOH HOH . 
D 4 HOH A 25 525 85 HOH HOH . 
D 4 HOH A 26 526 72 HOH HOH . 
D 4 HOH A 27 527 29 HOH HOH . 
D 4 HOH A 28 528 151 HOH HOH . 
D 4 HOH A 29 529 52 HOH HOH . 
D 4 HOH A 30 530 94 HOH HOH . 
D 4 HOH A 31 531 58 HOH HOH . 
D 4 HOH A 32 532 227 HOH HOH . 
D 4 HOH A 33 533 101 HOH HOH . 
D 4 HOH A 34 534 166 HOH HOH . 
D 4 HOH A 35 535 5 HOH HOH . 
D 4 HOH A 36 536 39 HOH HOH . 
D 4 HOH A 37 537 121 HOH HOH . 
D 4 HOH A 38 538 133 HOH HOH . 
D 4 HOH A 39 539 4 HOH HOH . 
D 4 HOH A 40 540 35 HOH HOH . 
D 4 HOH A 41 541 23 HOH HOH . 
D 4 HOH A 42 542 1 HOH HOH . 
D 4 HOH A 43 543 92 HOH HOH . 
D 4 HOH A 44 544 100 HOH HOH . 
D 4 HOH A 45 545 40 HOH HOH . 
D 4 HOH A 46 546 108 HOH HOH . 
D 4 HOH A 47 547 180 HOH HOH . 
D 4 HOH A 48 548 49 HOH HOH . 
D 4 HOH A 49 549 24 HOH HOH . 
D 4 HOH A 50 550 173 HOH HOH . 
D 4 HOH A 51 551 172 HOH HOH . 
D 4 HOH A 52 552 223 HOH HOH . 
D 4 HOH A 53 553 219 HOH HOH . 
D 4 HOH A 54 554 76 HOH HOH . 
D 4 HOH A 55 555 13 HOH HOH . 
D 4 HOH A 56 556 112 HOH HOH . 
D 4 HOH A 57 557 171 HOH HOH . 
D 4 HOH A 58 558 75 HOH HOH . 
D 4 HOH A 59 559 3 HOH HOH . 
D 4 HOH A 60 560 118 HOH HOH . 
D 4 HOH A 61 561 68 HOH HOH . 
D 4 HOH A 62 562 73 HOH HOH . 
D 4 HOH A 63 563 74 HOH HOH . 
D 4 HOH A 64 564 205 HOH HOH . 
D 4 HOH A 65 565 107 HOH HOH . 
D 4 HOH A 66 566 30 HOH HOH . 
D 4 HOH A 67 567 8 HOH HOH . 
D 4 HOH A 68 568 109 HOH HOH . 
D 4 HOH A 69 569 22 HOH HOH . 
D 4 HOH A 70 570 54 HOH HOH . 
D 4 HOH A 71 571 14 HOH HOH . 
D 4 HOH A 72 572 26 HOH HOH . 
D 4 HOH A 73 573 12 HOH HOH . 
D 4 HOH A 74 574 50 HOH HOH . 
D 4 HOH A 75 575 192 HOH HOH . 
D 4 HOH A 76 576 169 HOH HOH . 
D 4 HOH A 77 577 179 HOH HOH . 
D 4 HOH A 78 578 9 HOH HOH . 
D 4 HOH A 79 579 123 HOH HOH . 
D 4 HOH A 80 580 137 HOH HOH . 
D 4 HOH A 81 581 63 HOH HOH . 
D 4 HOH A 82 582 6 HOH HOH . 
D 4 HOH A 83 583 115 HOH HOH . 
D 4 HOH A 84 584 31 HOH HOH . 
D 4 HOH A 85 585 34 HOH HOH . 
D 4 HOH A 86 586 89 HOH HOH . 
D 4 HOH A 87 587 42 HOH HOH . 
D 4 HOH A 88 588 64 HOH HOH . 
D 4 HOH A 89 589 186 HOH HOH . 
D 4 HOH A 90 590 16 HOH HOH . 
D 4 HOH A 91 591 10 HOH HOH . 
D 4 HOH A 92 592 7 HOH HOH . 
D 4 HOH A 93 593 156 HOH HOH . 
D 4 HOH A 94 594 11 HOH HOH . 
D 4 HOH A 95 595 56 HOH HOH . 
D 4 HOH A 96 596 125 HOH HOH . 
D 4 HOH A 97 597 38 HOH HOH . 
D 4 HOH A 98 598 170 HOH HOH . 
D 4 HOH A 99 599 81 HOH HOH . 
D 4 HOH A 100 600 216 HOH HOH . 
D 4 HOH A 101 601 210 HOH HOH . 
D 4 HOH A 102 602 91 HOH HOH . 
D 4 HOH A 103 603 152 HOH HOH . 
D 4 HOH A 104 604 160 HOH HOH . 
D 4 HOH A 105 605 90 HOH HOH . 
D 4 HOH A 106 606 2 HOH HOH . 
D 4 HOH A 107 607 193 HOH HOH . 
D 4 HOH A 108 608 71 HOH HOH . 
D 4 HOH A 109 609 131 HOH HOH . 
D 4 HOH A 110 610 93 HOH HOH . 
D 4 HOH A 111 611 211 HOH HOH . 
D 4 HOH A 112 612 18 HOH HOH . 
D 4 HOH A 113 613 88 HOH HOH . 
D 4 HOH A 114 614 135 HOH HOH . 
D 4 HOH A 115 615 51 HOH HOH . 
D 4 HOH A 116 616 48 HOH HOH . 
D 4 HOH A 117 617 87 HOH HOH . 
D 4 HOH A 118 618 41 HOH HOH . 
D 4 HOH A 119 619 55 HOH HOH . 
D 4 HOH A 120 620 98 HOH HOH . 
D 4 HOH A 121 621 102 HOH HOH . 
D 4 HOH A 122 622 122 HOH HOH . 
D 4 HOH A 123 623 103 HOH HOH . 
D 4 HOH A 124 624 145 HOH HOH . 
D 4 HOH A 125 625 106 HOH HOH . 
D 4 HOH A 126 626 79 HOH HOH . 
D 4 HOH A 127 627 174 HOH HOH . 
D 4 HOH A 128 628 185 HOH HOH . 
D 4 HOH A 129 629 77 HOH HOH . 
D 4 HOH A 130 630 20 HOH HOH . 
D 4 HOH A 131 631 201 HOH HOH . 
D 4 HOH A 132 632 21 HOH HOH . 
D 4 HOH A 133 633 45 HOH HOH . 
D 4 HOH A 134 634 47 HOH HOH . 
D 4 HOH A 135 635 200 HOH HOH . 
D 4 HOH A 136 636 33 HOH HOH . 
D 4 HOH A 137 637 43 HOH HOH . 
D 4 HOH A 138 638 199 HOH HOH . 
D 4 HOH A 139 639 113 HOH HOH . 
D 4 HOH A 140 640 97 HOH HOH . 
D 4 HOH A 141 641 67 HOH HOH . 
D 4 HOH A 142 642 15 HOH HOH . 
D 4 HOH A 143 643 134 HOH HOH . 
D 4 HOH A 144 644 114 HOH HOH . 
D 4 HOH A 145 645 46 HOH HOH . 
D 4 HOH A 146 646 44 HOH HOH . 
D 4 HOH A 147 647 120 HOH HOH . 
D 4 HOH A 148 648 36 HOH HOH . 
D 4 HOH A 149 649 197 HOH HOH . 
D 4 HOH A 150 650 127 HOH HOH . 
D 4 HOH A 151 651 70 HOH HOH . 
D 4 HOH A 152 652 84 HOH HOH . 
D 4 HOH A 153 653 62 HOH HOH . 
D 4 HOH A 154 654 61 HOH HOH . 
D 4 HOH A 155 655 175 HOH HOH . 
D 4 HOH A 156 656 32 HOH HOH . 
D 4 HOH A 157 657 194 HOH HOH . 
D 4 HOH A 158 658 99 HOH HOH . 
D 4 HOH A 159 659 155 HOH HOH . 
D 4 HOH A 160 660 116 HOH HOH . 
D 4 HOH A 161 661 190 HOH HOH . 
D 4 HOH A 162 662 215 HOH HOH . 
D 4 HOH A 163 663 27 HOH HOH . 
D 4 HOH A 164 664 139 HOH HOH . 
D 4 HOH A 165 665 136 HOH HOH . 
D 4 HOH A 166 666 187 HOH HOH . 
D 4 HOH A 167 667 82 HOH HOH . 
D 4 HOH A 168 668 57 HOH HOH . 
D 4 HOH A 169 669 78 HOH HOH . 
D 4 HOH A 170 670 191 HOH HOH . 
D 4 HOH A 171 671 161 HOH HOH . 
D 4 HOH A 172 672 140 HOH HOH . 
D 4 HOH A 173 673 164 HOH HOH . 
D 4 HOH A 174 674 203 HOH HOH . 
D 4 HOH A 175 675 188 HOH HOH . 
D 4 HOH A 176 676 150 HOH HOH . 
D 4 HOH A 177 677 162 HOH HOH . 
D 4 HOH A 178 678 147 HOH HOH . 
D 4 HOH A 179 679 149 HOH HOH . 
D 4 HOH A 180 680 141 HOH HOH . 
D 4 HOH A 181 681 154 HOH HOH . 
D 4 HOH A 182 682 163 HOH HOH . 
D 4 HOH A 183 683 207 HOH HOH . 
D 4 HOH A 184 684 196 HOH HOH . 
D 4 HOH A 185 685 226 HOH HOH . 
D 4 HOH A 186 686 221 HOH HOH . 
D 4 HOH A 187 687 111 HOH HOH . 
D 4 HOH A 188 688 218 HOH HOH . 
D 4 HOH A 189 689 198 HOH HOH . 
D 4 HOH A 190 690 96 HOH HOH . 
D 4 HOH A 191 691 28 HOH HOH . 
D 4 HOH A 192 692 66 HOH HOH . 
D 4 HOH A 193 693 176 HOH HOH . 
D 4 HOH A 194 694 104 HOH HOH . 
D 4 HOH A 195 695 217 HOH HOH . 
D 4 HOH A 196 696 182 HOH HOH . 
D 4 HOH A 197 697 206 HOH HOH . 
D 4 HOH A 198 698 69 HOH HOH . 
D 4 HOH A 199 699 110 HOH HOH . 
D 4 HOH A 200 700 224 HOH HOH . 
D 4 HOH A 201 701 144 HOH HOH . 
D 4 HOH A 202 702 178 HOH HOH . 
D 4 HOH A 203 703 209 HOH HOH . 
D 4 HOH A 204 704 167 HOH HOH . 
D 4 HOH A 205 705 189 HOH HOH . 
D 4 HOH A 206 706 202 HOH HOH . 
D 4 HOH A 207 707 83 HOH HOH . 
D 4 HOH A 208 708 130 HOH HOH . 
D 4 HOH A 209 709 222 HOH HOH . 
D 4 HOH A 210 710 146 HOH HOH . 
D 4 HOH A 211 711 181 HOH HOH . 
D 4 HOH A 212 712 124 HOH HOH . 
D 4 HOH A 213 713 129 HOH HOH . 
D 4 HOH A 214 714 59 HOH HOH . 
D 4 HOH A 215 715 132 HOH HOH . 
D 4 HOH A 216 716 142 HOH HOH . 
D 4 HOH A 217 717 220 HOH HOH . 
D 4 HOH A 218 718 214 HOH HOH . 
D 4 HOH A 219 719 86 HOH HOH . 
D 4 HOH A 220 720 208 HOH HOH . 
D 4 HOH A 221 721 183 HOH HOH . 
D 4 HOH A 222 722 153 HOH HOH . 
D 4 HOH A 223 723 60 HOH HOH . 
D 4 HOH A 224 724 168 HOH HOH . 
D 4 HOH A 225 725 126 HOH HOH . 
D 4 HOH A 226 726 225 HOH HOH . 
D 4 HOH A 227 727 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . C 3 21.244 -40.909 -22.623 1 66.16 ? C TRS 402 A 1 
HETATM 2 C C1 TRS . . . C 3 20.705 -39.838 -21.682 1 65.42 ? C1 TRS 402 A 1 
HETATM 3 C C2 TRS . . . C 3 20.623 -40.821 -23.977 1 88.8 ? C2 TRS 402 A 1 
HETATM 4 C C3 TRS . . . C 3 20.993 -42.271 -22.058 1 80.35 ? C3 TRS 402 A 1 
HETATM 5 N N TRS . . . C 3 22.719 -40.727 -22.743 1 72.36 ? N TRS 402 A 1 
HETATM 6 O O1 TRS . . . C 3 21.757 -38.976 -21.314 1 114.49 ? O1 TRS 402 A 1 
HETATM 7 O O2 TRS . . . C 3 20.88 -39.51 -24.461 1 65.48 ? O2 TRS 402 A 1 
HETATM 8 O O3 TRS . . . C 3 21.558 -42.203 -20.822 1 53.45 ? O3 TRS 402 A 1 
HETATM 9 H H11 TRS . . . C 3 20.29 -40.312 -20.791 1 78.51 ? H11 TRS 402 A 1 
HETATM 10 H H12 TRS . . . C 3 19.923 -39.268 -22.189 1 78.51 ? H12 TRS 402 A 1 
HETATM 11 H H21 TRS . . . C 3 19.549 -41.001 -23.898 1 106.55 ? H21 TRS 402 A 1 
HETATM 12 H H22 TRS . . . C 3 21.07 -41.571 -24.633 1 106.55 ? H22 TRS 402 A 1 
HETATM 13 H H31 TRS . . . C 3 19.928 -42.493 -21.96 1 96.42 ? H31 TRS 402 A 1 
HETATM 14 H H32 TRS . . . C 3 21.478 -43.059 -22.637 1 96.42 ? H32 TRS 402 A 1 
HETATM 15 H HN1 TRS . . . C 3 23.153 -40.812 -21.81 1 86.83 ? HN1 TRS 402 A 1 
HETATM 16 H HN2 TRS . . . C 3 23.105 -41.451 -23.371 1 86.83 ? HN2 TRS 402 A 1 
HETATM 17 H HN3 TRS . . . C 3 22.92 -39.791 -23.133 1 86.83 ? HN3 TRS 402 A 1 
HETATM 18 H HO1 TRS . . . C 3 21.421 -38.293 -20.717 1 137.39 ? HO1 TRS 402 A 1 
HETATM 19 H HO2 TRS . . . C 3 20.492 -39.409 -25.342 1 78.58 ? HO2 TRS 402 A 1 
HETATM 20 H HO3 TRS . . . C 3 21.937 -41.323 -20.689 1 64.13 ? HO3 TRS 402 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#