data_5QDO # _model_server_result.job_id 5EYmSgrGQCbJUqZ9FgBCDQ _model_server_result.datetime_utc '2024-11-21 22:22:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QDO # _exptl.entry_id 5QDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(thiophen-2-yl)-1H-imidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDO _cell.length_a 89.35 _cell.length_b 89.35 _cell.length_c 106.161 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H6 N2 S' _chem_comp.formula_weight 150.201 _chem_comp.id JG4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(thiophen-2-yl)-1H-imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 C09 JG4 sing 173 n y N10 C06 JG4 doub 174 n y S04 C05 JG4 sing 175 n y S04 C03 JG4 sing 176 n y C09 C08 JG4 doub 177 n y C05 C01 JG4 doub 178 n y C03 C06 JG4 sing 179 n n C03 C02 JG4 doub 180 n y C06 N07 JG4 sing 181 n y C01 C02 JG4 sing 182 n y C08 N07 JG4 sing 183 n y C01 H011 JG4 sing 184 n n C02 H021 JG4 sing 185 n n C05 H051 JG4 sing 186 n n N07 H071 JG4 sing 187 n n C08 H081 JG4 sing 188 n n C09 H091 JG4 sing 189 n n # _atom_sites.entry_id 5QDO _atom_sites.fract_transf_matrix[1][1] 0.011192 _atom_sites.fract_transf_matrix[1][2] 0.006462 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JG4 A 1 401 1 JG4 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 81 HOH HOH . D 4 HOH A 2 502 209 HOH HOH . D 4 HOH A 3 503 164 HOH HOH . D 4 HOH A 4 504 77 HOH HOH . D 4 HOH A 5 505 175 HOH HOH . D 4 HOH A 6 506 141 HOH HOH . D 4 HOH A 7 507 182 HOH HOH . D 4 HOH A 8 508 111 HOH HOH . D 4 HOH A 9 509 168 HOH HOH . D 4 HOH A 10 510 130 HOH HOH . D 4 HOH A 11 511 173 HOH HOH . D 4 HOH A 12 512 102 HOH HOH . D 4 HOH A 13 513 159 HOH HOH . D 4 HOH A 14 514 155 HOH HOH . D 4 HOH A 15 515 95 HOH HOH . D 4 HOH A 16 516 163 HOH HOH . D 4 HOH A 17 517 117 HOH HOH . D 4 HOH A 18 518 16 HOH HOH . D 4 HOH A 19 519 144 HOH HOH . D 4 HOH A 20 520 109 HOH HOH . D 4 HOH A 21 521 79 HOH HOH . D 4 HOH A 22 522 185 HOH HOH . D 4 HOH A 23 523 54 HOH HOH . D 4 HOH A 24 524 158 HOH HOH . D 4 HOH A 25 525 45 HOH HOH . D 4 HOH A 26 526 180 HOH HOH . D 4 HOH A 27 527 22 HOH HOH . D 4 HOH A 28 528 91 HOH HOH . D 4 HOH A 29 529 82 HOH HOH . D 4 HOH A 30 530 150 HOH HOH . D 4 HOH A 31 531 85 HOH HOH . D 4 HOH A 32 532 94 HOH HOH . D 4 HOH A 33 533 122 HOH HOH . D 4 HOH A 34 534 11 HOH HOH . D 4 HOH A 35 535 28 HOH HOH . D 4 HOH A 36 536 189 HOH HOH . D 4 HOH A 37 537 70 HOH HOH . D 4 HOH A 38 538 146 HOH HOH . D 4 HOH A 39 539 106 HOH HOH . D 4 HOH A 40 540 193 HOH HOH . D 4 HOH A 41 541 84 HOH HOH . D 4 HOH A 42 542 55 HOH HOH . D 4 HOH A 43 543 73 HOH HOH . D 4 HOH A 44 544 92 HOH HOH . D 4 HOH A 45 545 20 HOH HOH . D 4 HOH A 46 546 5 HOH HOH . D 4 HOH A 47 547 51 HOH HOH . D 4 HOH A 48 548 116 HOH HOH . D 4 HOH A 49 549 206 HOH HOH . D 4 HOH A 50 550 56 HOH HOH . D 4 HOH A 51 551 104 HOH HOH . D 4 HOH A 52 552 215 HOH HOH . D 4 HOH A 53 553 60 HOH HOH . D 4 HOH A 54 554 31 HOH HOH . D 4 HOH A 55 555 8 HOH HOH . D 4 HOH A 56 556 37 HOH HOH . D 4 HOH A 57 557 9 HOH HOH . D 4 HOH A 58 558 67 HOH HOH . D 4 HOH A 59 559 26 HOH HOH . D 4 HOH A 60 560 103 HOH HOH . D 4 HOH A 61 561 14 HOH HOH . D 4 HOH A 62 562 1 HOH HOH . D 4 HOH A 63 563 147 HOH HOH . D 4 HOH A 64 564 24 HOH HOH . D 4 HOH A 65 565 156 HOH HOH . D 4 HOH A 66 566 66 HOH HOH . D 4 HOH A 67 567 3 HOH HOH . D 4 HOH A 68 568 18 HOH HOH . D 4 HOH A 69 569 58 HOH HOH . D 4 HOH A 70 570 167 HOH HOH . D 4 HOH A 71 571 134 HOH HOH . D 4 HOH A 72 572 121 HOH HOH . D 4 HOH A 73 573 13 HOH HOH . D 4 HOH A 74 574 6 HOH HOH . D 4 HOH A 75 575 12 HOH HOH . D 4 HOH A 76 576 27 HOH HOH . D 4 HOH A 77 577 4 HOH HOH . D 4 HOH A 78 578 39 HOH HOH . D 4 HOH A 79 579 41 HOH HOH . D 4 HOH A 80 580 120 HOH HOH . D 4 HOH A 81 581 65 HOH HOH . D 4 HOH A 82 582 40 HOH HOH . D 4 HOH A 83 583 128 HOH HOH . D 4 HOH A 84 584 188 HOH HOH . D 4 HOH A 85 585 161 HOH HOH . D 4 HOH A 86 586 162 HOH HOH . D 4 HOH A 87 587 93 HOH HOH . D 4 HOH A 88 588 112 HOH HOH . D 4 HOH A 89 589 75 HOH HOH . D 4 HOH A 90 590 76 HOH HOH . D 4 HOH A 91 591 32 HOH HOH . D 4 HOH A 92 592 49 HOH HOH . D 4 HOH A 93 593 178 HOH HOH . D 4 HOH A 94 594 169 HOH HOH . D 4 HOH A 95 595 36 HOH HOH . D 4 HOH A 96 596 149 HOH HOH . D 4 HOH A 97 597 90 HOH HOH . D 4 HOH A 98 598 53 HOH HOH . D 4 HOH A 99 599 186 HOH HOH . D 4 HOH A 100 600 50 HOH HOH . D 4 HOH A 101 601 25 HOH HOH . D 4 HOH A 102 602 17 HOH HOH . D 4 HOH A 103 603 176 HOH HOH . D 4 HOH A 104 604 129 HOH HOH . D 4 HOH A 105 605 153 HOH HOH . D 4 HOH A 106 606 96 HOH HOH . D 4 HOH A 107 607 114 HOH HOH . D 4 HOH A 108 608 172 HOH HOH . D 4 HOH A 109 609 74 HOH HOH . D 4 HOH A 110 610 42 HOH HOH . D 4 HOH A 111 611 165 HOH HOH . D 4 HOH A 112 612 7 HOH HOH . D 4 HOH A 113 613 126 HOH HOH . D 4 HOH A 114 614 23 HOH HOH . D 4 HOH A 115 615 57 HOH HOH . D 4 HOH A 116 616 2 HOH HOH . D 4 HOH A 117 617 19 HOH HOH . D 4 HOH A 118 618 33 HOH HOH . D 4 HOH A 119 619 154 HOH HOH . D 4 HOH A 120 620 133 HOH HOH . D 4 HOH A 121 621 10 HOH HOH . D 4 HOH A 122 622 86 HOH HOH . D 4 HOH A 123 623 89 HOH HOH . D 4 HOH A 124 624 213 HOH HOH . D 4 HOH A 125 625 99 HOH HOH . D 4 HOH A 126 626 108 HOH HOH . D 4 HOH A 127 627 131 HOH HOH . D 4 HOH A 128 628 87 HOH HOH . D 4 HOH A 129 629 145 HOH HOH . D 4 HOH A 130 630 181 HOH HOH . D 4 HOH A 131 631 43 HOH HOH . D 4 HOH A 132 632 38 HOH HOH . D 4 HOH A 133 633 100 HOH HOH . D 4 HOH A 134 634 88 HOH HOH . D 4 HOH A 135 635 177 HOH HOH . D 4 HOH A 136 636 21 HOH HOH . D 4 HOH A 137 637 47 HOH HOH . D 4 HOH A 138 638 132 HOH HOH . D 4 HOH A 139 639 202 HOH HOH . D 4 HOH A 140 640 113 HOH HOH . D 4 HOH A 141 641 152 HOH HOH . D 4 HOH A 142 642 190 HOH HOH . D 4 HOH A 143 643 123 HOH HOH . D 4 HOH A 144 644 35 HOH HOH . D 4 HOH A 145 645 78 HOH HOH . D 4 HOH A 146 646 15 HOH HOH . D 4 HOH A 147 647 44 HOH HOH . D 4 HOH A 148 648 210 HOH HOH . D 4 HOH A 149 649 124 HOH HOH . D 4 HOH A 150 650 64 HOH HOH . D 4 HOH A 151 651 62 HOH HOH . D 4 HOH A 152 652 148 HOH HOH . D 4 HOH A 153 653 34 HOH HOH . D 4 HOH A 154 654 46 HOH HOH . D 4 HOH A 155 655 63 HOH HOH . D 4 HOH A 156 656 199 HOH HOH . D 4 HOH A 157 657 135 HOH HOH . D 4 HOH A 158 658 80 HOH HOH . D 4 HOH A 159 659 105 HOH HOH . D 4 HOH A 160 660 69 HOH HOH . D 4 HOH A 161 661 48 HOH HOH . D 4 HOH A 162 662 72 HOH HOH . D 4 HOH A 163 663 214 HOH HOH . D 4 HOH A 164 664 59 HOH HOH . D 4 HOH A 165 665 98 HOH HOH . D 4 HOH A 166 666 52 HOH HOH . D 4 HOH A 167 667 140 HOH HOH . D 4 HOH A 168 668 115 HOH HOH . D 4 HOH A 169 669 197 HOH HOH . D 4 HOH A 170 670 29 HOH HOH . D 4 HOH A 171 671 101 HOH HOH . D 4 HOH A 172 672 137 HOH HOH . D 4 HOH A 173 673 183 HOH HOH . D 4 HOH A 174 674 118 HOH HOH . D 4 HOH A 175 675 143 HOH HOH . D 4 HOH A 176 676 179 HOH HOH . D 4 HOH A 177 677 205 HOH HOH . D 4 HOH A 178 678 208 HOH HOH . D 4 HOH A 179 679 201 HOH HOH . D 4 HOH A 180 680 136 HOH HOH . D 4 HOH A 181 681 192 HOH HOH . D 4 HOH A 182 682 68 HOH HOH . D 4 HOH A 183 683 110 HOH HOH . D 4 HOH A 184 684 196 HOH HOH . D 4 HOH A 185 685 71 HOH HOH . D 4 HOH A 186 686 184 HOH HOH . D 4 HOH A 187 687 107 HOH HOH . D 4 HOH A 188 688 203 HOH HOH . D 4 HOH A 189 689 30 HOH HOH . D 4 HOH A 190 690 171 HOH HOH . D 4 HOH A 191 691 138 HOH HOH . D 4 HOH A 192 692 97 HOH HOH . D 4 HOH A 193 693 174 HOH HOH . D 4 HOH A 194 694 125 HOH HOH . D 4 HOH A 195 695 127 HOH HOH . D 4 HOH A 196 696 142 HOH HOH . D 4 HOH A 197 697 61 HOH HOH . D 4 HOH A 198 698 191 HOH HOH . D 4 HOH A 199 699 195 HOH HOH . D 4 HOH A 200 700 204 HOH HOH . D 4 HOH A 201 701 83 HOH HOH . D 4 HOH A 202 702 119 HOH HOH . D 4 HOH A 203 703 160 HOH HOH . D 4 HOH A 204 704 212 HOH HOH . D 4 HOH A 205 705 194 HOH HOH . D 4 HOH A 206 706 170 HOH HOH . D 4 HOH A 207 707 151 HOH HOH . D 4 HOH A 208 708 166 HOH HOH . D 4 HOH A 209 709 211 HOH HOH . D 4 HOH A 210 710 207 HOH HOH . D 4 HOH A 211 711 187 HOH HOH . D 4 HOH A 212 712 198 HOH HOH . D 4 HOH A 213 713 139 HOH HOH . D 4 HOH A 214 714 157 HOH HOH . D 4 HOH A 215 715 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 JG4 . C . B 2 -35.268 12.538 18.697 0.24 37.65 ? C01 JG4 401 A 1 HETATM 2 C C01 JG4 . D . B 2 -35.268 12.538 18.697 0.24 37.65 ? C01 JG4 401 A 1 HETATM 3 C C02 JG4 . C . B 2 -34.06 13.209 18.826 0.24 37.56 ? C02 JG4 401 A 1 HETATM 4 C C02 JG4 . D . B 2 -34.06 13.209 18.826 0.24 37.56 ? C02 JG4 401 A 1 HETATM 5 C C03 JG4 . C . B 2 -33.034 12.413 18.585 0.24 47.79 ? C03 JG4 401 A 1 HETATM 6 C C03 JG4 . D . B 2 -33.034 12.413 18.585 0.24 47.79 ? C03 JG4 401 A 1 HETATM 7 S S04 JG4 . C . B 2 -33.507 10.854 18.178 0.24 55.86 ? S04 JG4 401 A 1 HETATM 8 S S04 JG4 . D . B 2 -33.507 10.854 18.178 0.24 55.86 ? S04 JG4 401 A 1 HETATM 9 C C05 JG4 . C . B 2 -35.091 11.28 18.365 0.24 35.07 ? C05 JG4 401 A 1 HETATM 10 C C05 JG4 . D . B 2 -35.091 11.28 18.365 0.24 35.07 ? C05 JG4 401 A 1 HETATM 11 C C06 JG4 . C . B 2 -31.64 12.828 18.623 0.24 43.03 ? C06 JG4 401 A 1 HETATM 12 C C06 JG4 . D . B 2 -31.64 12.828 18.623 0.24 43.03 ? C06 JG4 401 A 1 HETATM 13 N N07 JG4 . C . B 2 -31.218 13.907 19.279 0.24 44.27 ? N07 JG4 401 A 1 HETATM 14 N N07 JG4 . D . B 2 -31.218 13.907 19.279 0.24 44.27 ? N07 JG4 401 A 1 HETATM 15 C C08 JG4 . C . B 2 -29.918 13.985 19.076 0.24 45.03 ? C08 JG4 401 A 1 HETATM 16 C C08 JG4 . D . B 2 -29.918 13.985 19.076 0.24 45.03 ? C08 JG4 401 A 1 HETATM 17 C C09 JG4 . C . B 2 -29.63 12.895 18.321 0.24 39.3 ? C09 JG4 401 A 1 HETATM 18 C C09 JG4 . D . B 2 -29.63 12.895 18.321 0.24 39.3 ? C09 JG4 401 A 1 HETATM 19 N N10 JG4 . C . B 2 -30.636 12.217 18.03 0.24 39.97 ? N10 JG4 401 A 1 HETATM 20 N N10 JG4 . D . B 2 -30.636 12.217 18.03 0.24 39.97 ? N10 JG4 401 A 1 HETATM 21 H H011 JG4 . C . B 2 -36.249 13.029 18.86 0.24 45.18 ? H011 JG4 401 A 1 HETATM 22 H H011 JG4 . D . B 2 -36.249 13.029 18.86 0.24 45.18 ? H011 JG4 401 A 1 HETATM 23 H H021 JG4 . C . B 2 -34.031 14.278 19.099 0.24 45.07 ? H021 JG4 401 A 1 HETATM 24 H H021 JG4 . D . B 2 -34.031 14.278 19.099 0.24 45.07 ? H021 JG4 401 A 1 HETATM 25 H H051 JG4 . C . B 2 -35.941 10.563 18.206 0.24 42.09 ? H051 JG4 401 A 1 HETATM 26 H H051 JG4 . D . B 2 -35.941 10.563 18.206 0.24 42.09 ? H051 JG4 401 A 1 HETATM 27 H H071 JG4 . C . B 2 -31.73 14.569 19.834 0.24 53.12 ? H071 JG4 401 A 1 HETATM 28 H H071 JG4 . D . B 2 -31.73 14.569 19.834 0.24 53.12 ? H071 JG4 401 A 1 HETATM 29 H H081 JG4 . C . B 2 -29.209 14.726 19.413 0.24 54.04 ? H081 JG4 401 A 1 HETATM 30 H H081 JG4 . D . B 2 -29.209 14.726 19.413 0.24 54.04 ? H081 JG4 401 A 1 HETATM 31 H H091 JG4 . . . B 2 -28.647 12.851 18.144 1 47.16 ? H091 JG4 401 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #