data_5QDO # _model_server_result.job_id hOV3WqZmAsvwyxvU5DAeiw _model_server_result.datetime_utc '2024-11-07 18:49:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QDO # _exptl.entry_id 5QDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDO _cell.length_a 89.35 _cell.length_b 89.35 _cell.length_c 106.161 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 351 n n C C2 TRS sing 352 n n C C3 TRS sing 353 n n C N TRS sing 354 n n C1 O1 TRS sing 355 n n C1 H11 TRS sing 356 n n C1 H12 TRS sing 357 n n C2 O2 TRS sing 358 n n C2 H21 TRS sing 359 n n C2 H22 TRS sing 360 n n C3 O3 TRS sing 361 n n C3 H31 TRS sing 362 n n C3 H32 TRS sing 363 n n N HN1 TRS sing 364 n n N HN2 TRS sing 365 n n N HN3 TRS sing 366 n n O1 HO1 TRS sing 367 n n O2 HO2 TRS sing 368 n n O3 HO3 TRS sing 369 n n # _atom_sites.entry_id 5QDO _atom_sites.fract_transf_matrix[1][1] 0.011192 _atom_sites.fract_transf_matrix[1][2] 0.006462 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JG4 A 1 401 1 JG4 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 81 HOH HOH . D 4 HOH A 2 502 209 HOH HOH . D 4 HOH A 3 503 164 HOH HOH . D 4 HOH A 4 504 77 HOH HOH . D 4 HOH A 5 505 175 HOH HOH . D 4 HOH A 6 506 141 HOH HOH . D 4 HOH A 7 507 182 HOH HOH . D 4 HOH A 8 508 111 HOH HOH . D 4 HOH A 9 509 168 HOH HOH . D 4 HOH A 10 510 130 HOH HOH . D 4 HOH A 11 511 173 HOH HOH . D 4 HOH A 12 512 102 HOH HOH . D 4 HOH A 13 513 159 HOH HOH . D 4 HOH A 14 514 155 HOH HOH . D 4 HOH A 15 515 95 HOH HOH . D 4 HOH A 16 516 163 HOH HOH . D 4 HOH A 17 517 117 HOH HOH . D 4 HOH A 18 518 16 HOH HOH . D 4 HOH A 19 519 144 HOH HOH . D 4 HOH A 20 520 109 HOH HOH . D 4 HOH A 21 521 79 HOH HOH . D 4 HOH A 22 522 185 HOH HOH . D 4 HOH A 23 523 54 HOH HOH . D 4 HOH A 24 524 158 HOH HOH . D 4 HOH A 25 525 45 HOH HOH . D 4 HOH A 26 526 180 HOH HOH . D 4 HOH A 27 527 22 HOH HOH . D 4 HOH A 28 528 91 HOH HOH . D 4 HOH A 29 529 82 HOH HOH . D 4 HOH A 30 530 150 HOH HOH . D 4 HOH A 31 531 85 HOH HOH . D 4 HOH A 32 532 94 HOH HOH . D 4 HOH A 33 533 122 HOH HOH . D 4 HOH A 34 534 11 HOH HOH . D 4 HOH A 35 535 28 HOH HOH . D 4 HOH A 36 536 189 HOH HOH . D 4 HOH A 37 537 70 HOH HOH . D 4 HOH A 38 538 146 HOH HOH . D 4 HOH A 39 539 106 HOH HOH . D 4 HOH A 40 540 193 HOH HOH . D 4 HOH A 41 541 84 HOH HOH . D 4 HOH A 42 542 55 HOH HOH . D 4 HOH A 43 543 73 HOH HOH . D 4 HOH A 44 544 92 HOH HOH . D 4 HOH A 45 545 20 HOH HOH . D 4 HOH A 46 546 5 HOH HOH . D 4 HOH A 47 547 51 HOH HOH . D 4 HOH A 48 548 116 HOH HOH . D 4 HOH A 49 549 206 HOH HOH . D 4 HOH A 50 550 56 HOH HOH . D 4 HOH A 51 551 104 HOH HOH . D 4 HOH A 52 552 215 HOH HOH . D 4 HOH A 53 553 60 HOH HOH . D 4 HOH A 54 554 31 HOH HOH . D 4 HOH A 55 555 8 HOH HOH . D 4 HOH A 56 556 37 HOH HOH . D 4 HOH A 57 557 9 HOH HOH . D 4 HOH A 58 558 67 HOH HOH . D 4 HOH A 59 559 26 HOH HOH . D 4 HOH A 60 560 103 HOH HOH . D 4 HOH A 61 561 14 HOH HOH . D 4 HOH A 62 562 1 HOH HOH . D 4 HOH A 63 563 147 HOH HOH . D 4 HOH A 64 564 24 HOH HOH . D 4 HOH A 65 565 156 HOH HOH . D 4 HOH A 66 566 66 HOH HOH . D 4 HOH A 67 567 3 HOH HOH . D 4 HOH A 68 568 18 HOH HOH . D 4 HOH A 69 569 58 HOH HOH . D 4 HOH A 70 570 167 HOH HOH . D 4 HOH A 71 571 134 HOH HOH . D 4 HOH A 72 572 121 HOH HOH . D 4 HOH A 73 573 13 HOH HOH . D 4 HOH A 74 574 6 HOH HOH . D 4 HOH A 75 575 12 HOH HOH . D 4 HOH A 76 576 27 HOH HOH . D 4 HOH A 77 577 4 HOH HOH . D 4 HOH A 78 578 39 HOH HOH . D 4 HOH A 79 579 41 HOH HOH . D 4 HOH A 80 580 120 HOH HOH . D 4 HOH A 81 581 65 HOH HOH . D 4 HOH A 82 582 40 HOH HOH . D 4 HOH A 83 583 128 HOH HOH . D 4 HOH A 84 584 188 HOH HOH . D 4 HOH A 85 585 161 HOH HOH . D 4 HOH A 86 586 162 HOH HOH . D 4 HOH A 87 587 93 HOH HOH . D 4 HOH A 88 588 112 HOH HOH . D 4 HOH A 89 589 75 HOH HOH . D 4 HOH A 90 590 76 HOH HOH . D 4 HOH A 91 591 32 HOH HOH . D 4 HOH A 92 592 49 HOH HOH . D 4 HOH A 93 593 178 HOH HOH . D 4 HOH A 94 594 169 HOH HOH . D 4 HOH A 95 595 36 HOH HOH . D 4 HOH A 96 596 149 HOH HOH . D 4 HOH A 97 597 90 HOH HOH . D 4 HOH A 98 598 53 HOH HOH . D 4 HOH A 99 599 186 HOH HOH . D 4 HOH A 100 600 50 HOH HOH . D 4 HOH A 101 601 25 HOH HOH . D 4 HOH A 102 602 17 HOH HOH . D 4 HOH A 103 603 176 HOH HOH . D 4 HOH A 104 604 129 HOH HOH . D 4 HOH A 105 605 153 HOH HOH . D 4 HOH A 106 606 96 HOH HOH . D 4 HOH A 107 607 114 HOH HOH . D 4 HOH A 108 608 172 HOH HOH . D 4 HOH A 109 609 74 HOH HOH . D 4 HOH A 110 610 42 HOH HOH . D 4 HOH A 111 611 165 HOH HOH . D 4 HOH A 112 612 7 HOH HOH . D 4 HOH A 113 613 126 HOH HOH . D 4 HOH A 114 614 23 HOH HOH . D 4 HOH A 115 615 57 HOH HOH . D 4 HOH A 116 616 2 HOH HOH . D 4 HOH A 117 617 19 HOH HOH . D 4 HOH A 118 618 33 HOH HOH . D 4 HOH A 119 619 154 HOH HOH . D 4 HOH A 120 620 133 HOH HOH . D 4 HOH A 121 621 10 HOH HOH . D 4 HOH A 122 622 86 HOH HOH . D 4 HOH A 123 623 89 HOH HOH . D 4 HOH A 124 624 213 HOH HOH . D 4 HOH A 125 625 99 HOH HOH . D 4 HOH A 126 626 108 HOH HOH . D 4 HOH A 127 627 131 HOH HOH . D 4 HOH A 128 628 87 HOH HOH . D 4 HOH A 129 629 145 HOH HOH . D 4 HOH A 130 630 181 HOH HOH . D 4 HOH A 131 631 43 HOH HOH . D 4 HOH A 132 632 38 HOH HOH . D 4 HOH A 133 633 100 HOH HOH . D 4 HOH A 134 634 88 HOH HOH . D 4 HOH A 135 635 177 HOH HOH . D 4 HOH A 136 636 21 HOH HOH . D 4 HOH A 137 637 47 HOH HOH . D 4 HOH A 138 638 132 HOH HOH . D 4 HOH A 139 639 202 HOH HOH . D 4 HOH A 140 640 113 HOH HOH . D 4 HOH A 141 641 152 HOH HOH . D 4 HOH A 142 642 190 HOH HOH . D 4 HOH A 143 643 123 HOH HOH . D 4 HOH A 144 644 35 HOH HOH . D 4 HOH A 145 645 78 HOH HOH . D 4 HOH A 146 646 15 HOH HOH . D 4 HOH A 147 647 44 HOH HOH . D 4 HOH A 148 648 210 HOH HOH . D 4 HOH A 149 649 124 HOH HOH . D 4 HOH A 150 650 64 HOH HOH . D 4 HOH A 151 651 62 HOH HOH . D 4 HOH A 152 652 148 HOH HOH . D 4 HOH A 153 653 34 HOH HOH . D 4 HOH A 154 654 46 HOH HOH . D 4 HOH A 155 655 63 HOH HOH . D 4 HOH A 156 656 199 HOH HOH . D 4 HOH A 157 657 135 HOH HOH . D 4 HOH A 158 658 80 HOH HOH . D 4 HOH A 159 659 105 HOH HOH . D 4 HOH A 160 660 69 HOH HOH . D 4 HOH A 161 661 48 HOH HOH . D 4 HOH A 162 662 72 HOH HOH . D 4 HOH A 163 663 214 HOH HOH . D 4 HOH A 164 664 59 HOH HOH . D 4 HOH A 165 665 98 HOH HOH . D 4 HOH A 166 666 52 HOH HOH . D 4 HOH A 167 667 140 HOH HOH . D 4 HOH A 168 668 115 HOH HOH . D 4 HOH A 169 669 197 HOH HOH . D 4 HOH A 170 670 29 HOH HOH . D 4 HOH A 171 671 101 HOH HOH . D 4 HOH A 172 672 137 HOH HOH . D 4 HOH A 173 673 183 HOH HOH . D 4 HOH A 174 674 118 HOH HOH . D 4 HOH A 175 675 143 HOH HOH . D 4 HOH A 176 676 179 HOH HOH . D 4 HOH A 177 677 205 HOH HOH . D 4 HOH A 178 678 208 HOH HOH . D 4 HOH A 179 679 201 HOH HOH . D 4 HOH A 180 680 136 HOH HOH . D 4 HOH A 181 681 192 HOH HOH . D 4 HOH A 182 682 68 HOH HOH . D 4 HOH A 183 683 110 HOH HOH . D 4 HOH A 184 684 196 HOH HOH . D 4 HOH A 185 685 71 HOH HOH . D 4 HOH A 186 686 184 HOH HOH . D 4 HOH A 187 687 107 HOH HOH . D 4 HOH A 188 688 203 HOH HOH . D 4 HOH A 189 689 30 HOH HOH . D 4 HOH A 190 690 171 HOH HOH . D 4 HOH A 191 691 138 HOH HOH . D 4 HOH A 192 692 97 HOH HOH . D 4 HOH A 193 693 174 HOH HOH . D 4 HOH A 194 694 125 HOH HOH . D 4 HOH A 195 695 127 HOH HOH . D 4 HOH A 196 696 142 HOH HOH . D 4 HOH A 197 697 61 HOH HOH . D 4 HOH A 198 698 191 HOH HOH . D 4 HOH A 199 699 195 HOH HOH . D 4 HOH A 200 700 204 HOH HOH . D 4 HOH A 201 701 83 HOH HOH . D 4 HOH A 202 702 119 HOH HOH . D 4 HOH A 203 703 160 HOH HOH . D 4 HOH A 204 704 212 HOH HOH . D 4 HOH A 205 705 194 HOH HOH . D 4 HOH A 206 706 170 HOH HOH . D 4 HOH A 207 707 151 HOH HOH . D 4 HOH A 208 708 166 HOH HOH . D 4 HOH A 209 709 211 HOH HOH . D 4 HOH A 210 710 207 HOH HOH . D 4 HOH A 211 711 187 HOH HOH . D 4 HOH A 212 712 198 HOH HOH . D 4 HOH A 213 713 139 HOH HOH . D 4 HOH A 214 714 157 HOH HOH . D 4 HOH A 215 715 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.767 -2.167 -4.826 1 24.11 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -44.95 -2.096 -3.876 1 43.27 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.149 -2.681 -6.18 1 72.98 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.692 -3.056 -4.256 1 72.21 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.188 -0.81 -4.948 1 71.26 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.148 -0.748 -3.514 1 56.14 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.148 -1.801 -6.661 1 48.38 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.425 -2.508 -3.04 1 34.06 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.74 -2.695 -2.988 1 51.92 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.841 -2.484 -4.374 1 51.92 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.531 -3.7 -6.088 1 87.57 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.273 -2.678 -6.831 1 87.57 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -43.035 -4.084 -4.125 1 86.65 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.786 -3.049 -4.865 1 86.65 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.895 -0.476 -4.016 1 85.51 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.369 -0.841 -5.576 1 85.51 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.897 -0.167 -5.337 1 85.51 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.899 -0.684 -2.908 1 67.37 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.434 -2.087 -7.539 1 58.06 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -42.988 -1.733 -2.905 1 40.87 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #