data_5QDQ # _model_server_result.job_id Hb73ICNHhDCxm4xh6JZDxA _model_server_result.datetime_utc '2024-11-08 01:12:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QDQ # _exptl.entry_id 5QDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDQ _cell.length_a 90.043 _cell.length_b 90.043 _cell.length_c 106.678 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 353 n n C C2 TRS sing 354 n n C C3 TRS sing 355 n n C N TRS sing 356 n n C1 O1 TRS sing 357 n n C1 H11 TRS sing 358 n n C1 H12 TRS sing 359 n n C2 O2 TRS sing 360 n n C2 H21 TRS sing 361 n n C2 H22 TRS sing 362 n n C3 O3 TRS sing 363 n n C3 H31 TRS sing 364 n n C3 H32 TRS sing 365 n n N HN1 TRS sing 366 n n N HN2 TRS sing 367 n n N HN3 TRS sing 368 n n O1 HO1 TRS sing 369 n n O2 HO2 TRS sing 370 n n O3 HO3 TRS sing 371 n n # _atom_sites.entry_id 5QDQ _atom_sites.fract_transf_matrix[1][1] 0.011106 _atom_sites.fract_transf_matrix[1][2] 0.006412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JGD A 1 401 1 JGD LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 165 HOH HOH . D 4 HOH A 2 502 186 HOH HOH . D 4 HOH A 3 503 183 HOH HOH . D 4 HOH A 4 504 236 HOH HOH . D 4 HOH A 5 505 193 HOH HOH . D 4 HOH A 6 506 147 HOH HOH . D 4 HOH A 7 507 198 HOH HOH . D 4 HOH A 8 508 129 HOH HOH . D 4 HOH A 9 509 226 HOH HOH . D 4 HOH A 10 510 171 HOH HOH . D 4 HOH A 11 511 173 HOH HOH . D 4 HOH A 12 512 229 HOH HOH . D 4 HOH A 13 513 26 HOH HOH . D 4 HOH A 14 514 36 HOH HOH . D 4 HOH A 15 515 130 HOH HOH . D 4 HOH A 16 516 174 HOH HOH . D 4 HOH A 17 517 161 HOH HOH . D 4 HOH A 18 518 199 HOH HOH . D 4 HOH A 19 519 143 HOH HOH . D 4 HOH A 20 520 223 HOH HOH . D 4 HOH A 21 521 213 HOH HOH . D 4 HOH A 22 522 57 HOH HOH . D 4 HOH A 23 523 142 HOH HOH . D 4 HOH A 24 524 189 HOH HOH . D 4 HOH A 25 525 30 HOH HOH . D 4 HOH A 26 526 70 HOH HOH . D 4 HOH A 27 527 3 HOH HOH . D 4 HOH A 28 528 151 HOH HOH . D 4 HOH A 29 529 104 HOH HOH . D 4 HOH A 30 530 181 HOH HOH . D 4 HOH A 31 531 126 HOH HOH . D 4 HOH A 32 532 20 HOH HOH . D 4 HOH A 33 533 97 HOH HOH . D 4 HOH A 34 534 43 HOH HOH . D 4 HOH A 35 535 134 HOH HOH . D 4 HOH A 36 536 23 HOH HOH . D 4 HOH A 37 537 122 HOH HOH . D 4 HOH A 38 538 109 HOH HOH . D 4 HOH A 39 539 11 HOH HOH . D 4 HOH A 40 540 85 HOH HOH . D 4 HOH A 41 541 241 HOH HOH . D 4 HOH A 42 542 56 HOH HOH . D 4 HOH A 43 543 233 HOH HOH . D 4 HOH A 44 544 58 HOH HOH . D 4 HOH A 45 545 234 HOH HOH . D 4 HOH A 46 546 67 HOH HOH . D 4 HOH A 47 547 96 HOH HOH . D 4 HOH A 48 548 160 HOH HOH . D 4 HOH A 49 549 33 HOH HOH . D 4 HOH A 50 550 128 HOH HOH . D 4 HOH A 51 551 200 HOH HOH . D 4 HOH A 52 552 172 HOH HOH . D 4 HOH A 53 553 68 HOH HOH . D 4 HOH A 54 554 107 HOH HOH . D 4 HOH A 55 555 102 HOH HOH . D 4 HOH A 56 556 180 HOH HOH . D 4 HOH A 57 557 18 HOH HOH . D 4 HOH A 58 558 74 HOH HOH . D 4 HOH A 59 559 92 HOH HOH . D 4 HOH A 60 560 13 HOH HOH . D 4 HOH A 61 561 112 HOH HOH . D 4 HOH A 62 562 137 HOH HOH . D 4 HOH A 63 563 106 HOH HOH . D 4 HOH A 64 564 8 HOH HOH . D 4 HOH A 65 565 4 HOH HOH . D 4 HOH A 66 566 228 HOH HOH . D 4 HOH A 67 567 42 HOH HOH . D 4 HOH A 68 568 89 HOH HOH . D 4 HOH A 69 569 25 HOH HOH . D 4 HOH A 70 570 59 HOH HOH . D 4 HOH A 71 571 6 HOH HOH . D 4 HOH A 72 572 40 HOH HOH . D 4 HOH A 73 573 12 HOH HOH . D 4 HOH A 74 574 204 HOH HOH . D 4 HOH A 75 575 79 HOH HOH . D 4 HOH A 76 576 66 HOH HOH . D 4 HOH A 77 577 45 HOH HOH . D 4 HOH A 78 578 24 HOH HOH . D 4 HOH A 79 579 32 HOH HOH . D 4 HOH A 80 580 117 HOH HOH . D 4 HOH A 81 581 118 HOH HOH . D 4 HOH A 82 582 75 HOH HOH . D 4 HOH A 83 583 5 HOH HOH . D 4 HOH A 84 584 1 HOH HOH . D 4 HOH A 85 585 148 HOH HOH . D 4 HOH A 86 586 10 HOH HOH . D 4 HOH A 87 587 39 HOH HOH . D 4 HOH A 88 588 239 HOH HOH . D 4 HOH A 89 589 195 HOH HOH . D 4 HOH A 90 590 121 HOH HOH . D 4 HOH A 91 591 21 HOH HOH . D 4 HOH A 92 592 120 HOH HOH . D 4 HOH A 93 593 52 HOH HOH . D 4 HOH A 94 594 190 HOH HOH . D 4 HOH A 95 595 14 HOH HOH . D 4 HOH A 96 596 94 HOH HOH . D 4 HOH A 97 597 113 HOH HOH . D 4 HOH A 98 598 27 HOH HOH . D 4 HOH A 99 599 41 HOH HOH . D 4 HOH A 100 600 31 HOH HOH . D 4 HOH A 101 601 16 HOH HOH . D 4 HOH A 102 602 227 HOH HOH . D 4 HOH A 103 603 194 HOH HOH . D 4 HOH A 104 604 38 HOH HOH . D 4 HOH A 105 605 82 HOH HOH . D 4 HOH A 106 606 9 HOH HOH . D 4 HOH A 107 607 225 HOH HOH . D 4 HOH A 108 608 196 HOH HOH . D 4 HOH A 109 609 64 HOH HOH . D 4 HOH A 110 610 2 HOH HOH . D 4 HOH A 111 611 131 HOH HOH . D 4 HOH A 112 612 144 HOH HOH . D 4 HOH A 113 613 7 HOH HOH . D 4 HOH A 114 614 34 HOH HOH . D 4 HOH A 115 615 95 HOH HOH . D 4 HOH A 116 616 139 HOH HOH . D 4 HOH A 117 617 80 HOH HOH . D 4 HOH A 118 618 206 HOH HOH . D 4 HOH A 119 619 48 HOH HOH . D 4 HOH A 120 620 209 HOH HOH . D 4 HOH A 121 621 60 HOH HOH . D 4 HOH A 122 622 123 HOH HOH . D 4 HOH A 123 623 177 HOH HOH . D 4 HOH A 124 624 55 HOH HOH . D 4 HOH A 125 625 212 HOH HOH . D 4 HOH A 126 626 124 HOH HOH . D 4 HOH A 127 627 215 HOH HOH . D 4 HOH A 128 628 44 HOH HOH . D 4 HOH A 129 629 149 HOH HOH . D 4 HOH A 130 630 93 HOH HOH . D 4 HOH A 131 631 19 HOH HOH . D 4 HOH A 132 632 22 HOH HOH . D 4 HOH A 133 633 17 HOH HOH . D 4 HOH A 134 634 159 HOH HOH . D 4 HOH A 135 635 51 HOH HOH . D 4 HOH A 136 636 87 HOH HOH . D 4 HOH A 137 637 202 HOH HOH . D 4 HOH A 138 638 73 HOH HOH . D 4 HOH A 139 639 77 HOH HOH . D 4 HOH A 140 640 250 HOH HOH . D 4 HOH A 141 641 110 HOH HOH . D 4 HOH A 142 642 53 HOH HOH . D 4 HOH A 143 643 46 HOH HOH . D 4 HOH A 144 644 47 HOH HOH . D 4 HOH A 145 645 155 HOH HOH . D 4 HOH A 146 646 146 HOH HOH . D 4 HOH A 147 647 114 HOH HOH . D 4 HOH A 148 648 100 HOH HOH . D 4 HOH A 149 649 88 HOH HOH . D 4 HOH A 150 650 35 HOH HOH . D 4 HOH A 151 651 90 HOH HOH . D 4 HOH A 152 652 216 HOH HOH . D 4 HOH A 153 653 244 HOH HOH . D 4 HOH A 154 654 105 HOH HOH . D 4 HOH A 155 655 78 HOH HOH . D 4 HOH A 156 656 176 HOH HOH . D 4 HOH A 157 657 182 HOH HOH . D 4 HOH A 158 658 37 HOH HOH . D 4 HOH A 159 659 219 HOH HOH . D 4 HOH A 160 660 15 HOH HOH . D 4 HOH A 161 661 156 HOH HOH . D 4 HOH A 162 662 76 HOH HOH . D 4 HOH A 163 663 81 HOH HOH . D 4 HOH A 164 664 221 HOH HOH . D 4 HOH A 165 665 61 HOH HOH . D 4 HOH A 166 666 50 HOH HOH . D 4 HOH A 167 667 152 HOH HOH . D 4 HOH A 168 668 108 HOH HOH . D 4 HOH A 169 669 185 HOH HOH . D 4 HOH A 170 670 103 HOH HOH . D 4 HOH A 171 671 166 HOH HOH . D 4 HOH A 172 672 245 HOH HOH . D 4 HOH A 173 673 135 HOH HOH . D 4 HOH A 174 674 65 HOH HOH . D 4 HOH A 175 675 72 HOH HOH . D 4 HOH A 176 676 192 HOH HOH . D 4 HOH A 177 677 242 HOH HOH . D 4 HOH A 178 678 154 HOH HOH . D 4 HOH A 179 679 217 HOH HOH . D 4 HOH A 180 680 28 HOH HOH . D 4 HOH A 181 681 220 HOH HOH . D 4 HOH A 182 682 91 HOH HOH . D 4 HOH A 183 683 125 HOH HOH . D 4 HOH A 184 684 207 HOH HOH . D 4 HOH A 185 685 150 HOH HOH . D 4 HOH A 186 686 141 HOH HOH . D 4 HOH A 187 687 132 HOH HOH . D 4 HOH A 188 688 49 HOH HOH . D 4 HOH A 189 689 210 HOH HOH . D 4 HOH A 190 690 83 HOH HOH . D 4 HOH A 191 691 201 HOH HOH . D 4 HOH A 192 692 191 HOH HOH . D 4 HOH A 193 693 224 HOH HOH . D 4 HOH A 194 694 54 HOH HOH . D 4 HOH A 195 695 187 HOH HOH . D 4 HOH A 196 696 178 HOH HOH . D 4 HOH A 197 697 170 HOH HOH . D 4 HOH A 198 698 99 HOH HOH . D 4 HOH A 199 699 247 HOH HOH . D 4 HOH A 200 700 211 HOH HOH . D 4 HOH A 201 701 188 HOH HOH . D 4 HOH A 202 702 153 HOH HOH . D 4 HOH A 203 703 243 HOH HOH . D 4 HOH A 204 704 197 HOH HOH . D 4 HOH A 205 705 127 HOH HOH . D 4 HOH A 206 706 140 HOH HOH . D 4 HOH A 207 707 29 HOH HOH . D 4 HOH A 208 708 164 HOH HOH . D 4 HOH A 209 709 69 HOH HOH . D 4 HOH A 210 710 230 HOH HOH . D 4 HOH A 211 711 157 HOH HOH . D 4 HOH A 212 712 71 HOH HOH . D 4 HOH A 213 713 203 HOH HOH . D 4 HOH A 214 714 168 HOH HOH . D 4 HOH A 215 715 214 HOH HOH . D 4 HOH A 216 716 98 HOH HOH . D 4 HOH A 217 717 115 HOH HOH . D 4 HOH A 218 718 111 HOH HOH . D 4 HOH A 219 719 237 HOH HOH . D 4 HOH A 220 720 101 HOH HOH . D 4 HOH A 221 721 62 HOH HOH . D 4 HOH A 222 722 169 HOH HOH . D 4 HOH A 223 723 235 HOH HOH . D 4 HOH A 224 724 205 HOH HOH . D 4 HOH A 225 725 86 HOH HOH . D 4 HOH A 226 726 231 HOH HOH . D 4 HOH A 227 727 84 HOH HOH . D 4 HOH A 228 728 238 HOH HOH . D 4 HOH A 229 729 222 HOH HOH . D 4 HOH A 230 730 240 HOH HOH . D 4 HOH A 231 731 136 HOH HOH . D 4 HOH A 232 732 145 HOH HOH . D 4 HOH A 233 733 249 HOH HOH . D 4 HOH A 234 734 163 HOH HOH . D 4 HOH A 235 735 119 HOH HOH . D 4 HOH A 236 736 162 HOH HOH . D 4 HOH A 237 737 184 HOH HOH . D 4 HOH A 238 738 208 HOH HOH . D 4 HOH A 239 739 63 HOH HOH . D 4 HOH A 240 740 133 HOH HOH . D 4 HOH A 241 741 116 HOH HOH . D 4 HOH A 242 742 175 HOH HOH . D 4 HOH A 243 743 179 HOH HOH . D 4 HOH A 244 744 167 HOH HOH . D 4 HOH A 245 745 158 HOH HOH . D 4 HOH A 246 746 246 HOH HOH . D 4 HOH A 247 747 138 HOH HOH . D 4 HOH A 248 748 218 HOH HOH . D 4 HOH A 249 749 232 HOH HOH . D 4 HOH A 250 750 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.995 -2.098 -4.779 1 18.02 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -45.165 -1.966 -3.814 1 42.89 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.353 -2.599 -6.116 1 98.82 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.906 -2.948 -4.175 1 81.57 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.395 -0.732 -4.889 1 98.93 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.34 -0.598 -3.514 1 52.31 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.371 -1.716 -6.536 1 44.13 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.655 -2.396 -2.961 1 34.32 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.948 -2.525 -2.901 1 51.47 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -46.068 -2.366 -4.28 1 51.47 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.703 -3.63 -6.036 1 118.59 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.476 -2.562 -6.766 1 118.59 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -43.23 -3.982 -4.044 1 97.88 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.997 -2.925 -4.78 1 97.88 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -43.125 -0.398 -3.95 1 118.72 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.559 -0.771 -5.494 1 118.72 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -44.087 -0.084 -5.299 1 118.72 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -46.081 -0.495 -2.901 1 62.77 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.674 -1.97 -7.418 1 52.95 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -43.232 -1.631 -2.829 1 41.19 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #