data_5QDT # _model_server_result.job_id u902I009rOFuss9MDaUxXA _model_server_result.datetime_utc '2024-11-22 00:04:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QDT # _exptl.entry_id 5QDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDT _cell.length_a 89.756 _cell.length_b 89.756 _cell.length_c 106.491 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CZ PHE 182 A PHE 182 1_555 A OE2 GLU 200 A GLU 200 2_565 ? C ? ? C ? ? ? ? ? ? ? 1.38 ? covale ? covale2 A CZ PHE 182 A PHE 182 1_555 A OE2 GLU 200 A GLU 200 2_565 ? D ? ? D ? ? ? ? ? ? ? 1.38 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 362 n n C C2 TRS sing 363 n n C C3 TRS sing 364 n n C N TRS sing 365 n n C1 O1 TRS sing 366 n n C1 H11 TRS sing 367 n n C1 H12 TRS sing 368 n n C2 O2 TRS sing 369 n n C2 H21 TRS sing 370 n n C2 H22 TRS sing 371 n n C3 O3 TRS sing 372 n n C3 H31 TRS sing 373 n n C3 H32 TRS sing 374 n n N HN1 TRS sing 375 n n N HN2 TRS sing 376 n n N HN3 TRS sing 377 n n O1 HO1 TRS sing 378 n n O2 HO2 TRS sing 379 n n O3 HO3 TRS sing 380 n n # _atom_sites.entry_id 5QDT _atom_sites.fract_transf_matrix[1][1] 0.011141 _atom_sites.fract_transf_matrix[1][2] 0.006432 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GUY A 1 401 2 GUY LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 141 HOH HOH . D 4 HOH A 2 502 87 HOH HOH . D 4 HOH A 3 503 202 HOH HOH . D 4 HOH A 4 504 152 HOH HOH . D 4 HOH A 5 505 93 HOH HOH . D 4 HOH A 6 506 11 HOH HOH . D 4 HOH A 7 507 208 HOH HOH . D 4 HOH A 8 508 224 HOH HOH . D 4 HOH A 9 509 39 HOH HOH . D 4 HOH A 10 510 159 HOH HOH . D 4 HOH A 11 511 128 HOH HOH . D 4 HOH A 12 512 178 HOH HOH . D 4 HOH A 13 513 170 HOH HOH . D 4 HOH A 14 514 196 HOH HOH . D 4 HOH A 15 515 71 HOH HOH . D 4 HOH A 16 516 210 HOH HOH . D 4 HOH A 17 517 144 HOH HOH . D 4 HOH A 18 518 67 HOH HOH . D 4 HOH A 19 519 88 HOH HOH . D 4 HOH A 20 520 156 HOH HOH . D 4 HOH A 21 521 62 HOH HOH . D 4 HOH A 22 522 167 HOH HOH . D 4 HOH A 23 523 187 HOH HOH . D 4 HOH A 24 524 125 HOH HOH . D 4 HOH A 25 525 21 HOH HOH . D 4 HOH A 26 526 191 HOH HOH . D 4 HOH A 27 527 143 HOH HOH . D 4 HOH A 28 528 27 HOH HOH . D 4 HOH A 29 529 17 HOH HOH . D 4 HOH A 30 530 31 HOH HOH . D 4 HOH A 31 531 94 HOH HOH . D 4 HOH A 32 532 133 HOH HOH . D 4 HOH A 33 533 24 HOH HOH . D 4 HOH A 34 534 115 HOH HOH . D 4 HOH A 35 535 91 HOH HOH . D 4 HOH A 36 536 59 HOH HOH . D 4 HOH A 37 537 58 HOH HOH . D 4 HOH A 38 538 114 HOH HOH . D 4 HOH A 39 539 19 HOH HOH . D 4 HOH A 40 540 70 HOH HOH . D 4 HOH A 41 541 179 HOH HOH . D 4 HOH A 42 542 86 HOH HOH . D 4 HOH A 43 543 124 HOH HOH . D 4 HOH A 44 544 148 HOH HOH . D 4 HOH A 45 545 57 HOH HOH . D 4 HOH A 46 546 1 HOH HOH . D 4 HOH A 47 547 103 HOH HOH . D 4 HOH A 48 548 25 HOH HOH . D 4 HOH A 49 549 95 HOH HOH . D 4 HOH A 50 550 13 HOH HOH . D 4 HOH A 51 551 54 HOH HOH . D 4 HOH A 52 552 117 HOH HOH . D 4 HOH A 53 553 134 HOH HOH . D 4 HOH A 54 554 169 HOH HOH . D 4 HOH A 55 555 32 HOH HOH . D 4 HOH A 56 556 85 HOH HOH . D 4 HOH A 57 557 82 HOH HOH . D 4 HOH A 58 558 7 HOH HOH . D 4 HOH A 59 559 36 HOH HOH . D 4 HOH A 60 560 79 HOH HOH . D 4 HOH A 61 561 12 HOH HOH . D 4 HOH A 62 562 162 HOH HOH . D 4 HOH A 63 563 6 HOH HOH . D 4 HOH A 64 564 30 HOH HOH . D 4 HOH A 65 565 205 HOH HOH . D 4 HOH A 66 566 110 HOH HOH . D 4 HOH A 67 567 4 HOH HOH . D 4 HOH A 68 568 37 HOH HOH . D 4 HOH A 69 569 3 HOH HOH . D 4 HOH A 70 570 22 HOH HOH . D 4 HOH A 71 571 43 HOH HOH . D 4 HOH A 72 572 18 HOH HOH . D 4 HOH A 73 573 164 HOH HOH . D 4 HOH A 74 574 209 HOH HOH . D 4 HOH A 75 575 78 HOH HOH . D 4 HOH A 76 576 60 HOH HOH . D 4 HOH A 77 577 5 HOH HOH . D 4 HOH A 78 578 126 HOH HOH . D 4 HOH A 79 579 74 HOH HOH . D 4 HOH A 80 580 136 HOH HOH . D 4 HOH A 81 581 42 HOH HOH . D 4 HOH A 82 582 26 HOH HOH . D 4 HOH A 83 583 80 HOH HOH . D 4 HOH A 84 584 111 HOH HOH . D 4 HOH A 85 585 155 HOH HOH . D 4 HOH A 86 586 231 HOH HOH . D 4 HOH A 87 587 8 HOH HOH . D 4 HOH A 88 588 127 HOH HOH . D 4 HOH A 89 589 14 HOH HOH . D 4 HOH A 90 590 45 HOH HOH . D 4 HOH A 91 591 53 HOH HOH . D 4 HOH A 92 592 84 HOH HOH . D 4 HOH A 93 593 23 HOH HOH . D 4 HOH A 94 594 98 HOH HOH . D 4 HOH A 95 595 77 HOH HOH . D 4 HOH A 96 596 122 HOH HOH . D 4 HOH A 97 597 52 HOH HOH . D 4 HOH A 98 598 163 HOH HOH . D 4 HOH A 99 599 16 HOH HOH . D 4 HOH A 100 600 69 HOH HOH . D 4 HOH A 101 601 123 HOH HOH . D 4 HOH A 102 602 100 HOH HOH . D 4 HOH A 103 603 129 HOH HOH . D 4 HOH A 104 604 10 HOH HOH . D 4 HOH A 105 605 109 HOH HOH . D 4 HOH A 106 606 47 HOH HOH . D 4 HOH A 107 607 44 HOH HOH . D 4 HOH A 108 608 102 HOH HOH . D 4 HOH A 109 609 56 HOH HOH . D 4 HOH A 110 610 41 HOH HOH . D 4 HOH A 111 611 9 HOH HOH . D 4 HOH A 112 612 146 HOH HOH . D 4 HOH A 113 613 105 HOH HOH . D 4 HOH A 114 614 97 HOH HOH . D 4 HOH A 115 615 214 HOH HOH . D 4 HOH A 116 616 66 HOH HOH . D 4 HOH A 117 617 153 HOH HOH . D 4 HOH A 118 618 15 HOH HOH . D 4 HOH A 119 619 40 HOH HOH . D 4 HOH A 120 620 107 HOH HOH . D 4 HOH A 121 621 145 HOH HOH . D 4 HOH A 122 622 96 HOH HOH . D 4 HOH A 123 623 90 HOH HOH . D 4 HOH A 124 624 189 HOH HOH . D 4 HOH A 125 625 138 HOH HOH . D 4 HOH A 126 626 174 HOH HOH . D 4 HOH A 127 627 140 HOH HOH . D 4 HOH A 128 628 33 HOH HOH . D 4 HOH A 129 629 206 HOH HOH . D 4 HOH A 130 630 2 HOH HOH . D 4 HOH A 131 631 173 HOH HOH . D 4 HOH A 132 632 112 HOH HOH . D 4 HOH A 133 633 20 HOH HOH . D 4 HOH A 134 634 177 HOH HOH . D 4 HOH A 135 635 212 HOH HOH . D 4 HOH A 136 636 81 HOH HOH . D 4 HOH A 137 637 226 HOH HOH . D 4 HOH A 138 638 172 HOH HOH . D 4 HOH A 139 639 181 HOH HOH . D 4 HOH A 140 640 116 HOH HOH . D 4 HOH A 141 641 194 HOH HOH . D 4 HOH A 142 642 225 HOH HOH . D 4 HOH A 143 643 184 HOH HOH . D 4 HOH A 144 644 215 HOH HOH . D 4 HOH A 145 645 101 HOH HOH . D 4 HOH A 146 646 158 HOH HOH . D 4 HOH A 147 647 121 HOH HOH . D 4 HOH A 148 648 195 HOH HOH . D 4 HOH A 149 649 149 HOH HOH . D 4 HOH A 150 650 73 HOH HOH . D 4 HOH A 151 651 186 HOH HOH . D 4 HOH A 152 652 147 HOH HOH . D 4 HOH A 153 653 220 HOH HOH . D 4 HOH A 154 654 113 HOH HOH . D 4 HOH A 155 655 176 HOH HOH . D 4 HOH A 156 656 175 HOH HOH . D 4 HOH A 157 657 50 HOH HOH . D 4 HOH A 158 658 34 HOH HOH . D 4 HOH A 159 659 118 HOH HOH . D 4 HOH A 160 660 49 HOH HOH . D 4 HOH A 161 661 68 HOH HOH . D 4 HOH A 162 662 35 HOH HOH . D 4 HOH A 163 663 185 HOH HOH . D 4 HOH A 164 664 38 HOH HOH . D 4 HOH A 165 665 51 HOH HOH . D 4 HOH A 166 666 65 HOH HOH . D 4 HOH A 167 667 46 HOH HOH . D 4 HOH A 168 668 151 HOH HOH . D 4 HOH A 169 669 229 HOH HOH . D 4 HOH A 170 670 139 HOH HOH . D 4 HOH A 171 671 213 HOH HOH . D 4 HOH A 172 672 218 HOH HOH . D 4 HOH A 173 673 76 HOH HOH . D 4 HOH A 174 674 104 HOH HOH . D 4 HOH A 175 675 193 HOH HOH . D 4 HOH A 176 676 28 HOH HOH . D 4 HOH A 177 677 207 HOH HOH . D 4 HOH A 178 678 219 HOH HOH . D 4 HOH A 179 679 130 HOH HOH . D 4 HOH A 180 680 83 HOH HOH . D 4 HOH A 181 681 108 HOH HOH . D 4 HOH A 182 682 131 HOH HOH . D 4 HOH A 183 683 154 HOH HOH . D 4 HOH A 184 684 227 HOH HOH . D 4 HOH A 185 685 201 HOH HOH . D 4 HOH A 186 686 222 HOH HOH . D 4 HOH A 187 687 180 HOH HOH . D 4 HOH A 188 688 61 HOH HOH . D 4 HOH A 189 689 150 HOH HOH . D 4 HOH A 190 690 165 HOH HOH . D 4 HOH A 191 691 99 HOH HOH . D 4 HOH A 192 692 132 HOH HOH . D 4 HOH A 193 693 48 HOH HOH . D 4 HOH A 194 694 234 HOH HOH . D 4 HOH A 195 695 168 HOH HOH . D 4 HOH A 196 696 233 HOH HOH . D 4 HOH A 197 697 55 HOH HOH . D 4 HOH A 198 698 217 HOH HOH . D 4 HOH A 199 699 29 HOH HOH . D 4 HOH A 200 700 232 HOH HOH . D 4 HOH A 201 701 204 HOH HOH . D 4 HOH A 202 702 72 HOH HOH . D 4 HOH A 203 703 203 HOH HOH . D 4 HOH A 204 704 221 HOH HOH . D 4 HOH A 205 705 230 HOH HOH . D 4 HOH A 206 706 119 HOH HOH . D 4 HOH A 207 707 200 HOH HOH . D 4 HOH A 208 708 75 HOH HOH . D 4 HOH A 209 709 183 HOH HOH . D 4 HOH A 210 710 192 HOH HOH . D 4 HOH A 211 711 106 HOH HOH . D 4 HOH A 212 712 228 HOH HOH . D 4 HOH A 213 713 216 HOH HOH . D 4 HOH A 214 714 198 HOH HOH . D 4 HOH A 215 715 89 HOH HOH . D 4 HOH A 216 716 166 HOH HOH . D 4 HOH A 217 717 197 HOH HOH . D 4 HOH A 218 718 188 HOH HOH . D 4 HOH A 219 719 63 HOH HOH . D 4 HOH A 220 720 135 HOH HOH . D 4 HOH A 221 721 157 HOH HOH . D 4 HOH A 222 722 211 HOH HOH . D 4 HOH A 223 723 120 HOH HOH . D 4 HOH A 224 724 142 HOH HOH . D 4 HOH A 225 725 92 HOH HOH . D 4 HOH A 226 726 199 HOH HOH . D 4 HOH A 227 727 223 HOH HOH . D 4 HOH A 228 728 64 HOH HOH . D 4 HOH A 229 729 171 HOH HOH . D 4 HOH A 230 730 161 HOH HOH . D 4 HOH A 231 731 182 HOH HOH . D 4 HOH A 232 732 235 HOH HOH . D 4 HOH A 233 733 137 HOH HOH . D 4 HOH A 234 734 190 HOH HOH . D 4 HOH A 235 735 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.731 -2.067 -4.883 1 25.18 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -44.922 -1.985 -3.943 1 49.68 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.124 -2.557 -6.24 1 108.46 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.662 -2.944 -4.311 1 73.19 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.158 -0.699 -5.004 1 73.43 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.139 -0.641 -3.596 1 85.15 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.153 -1.694 -6.696 1 55.99 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.446 -2.419 -3.072 1 32.52 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.716 -2.569 -3.043 1 59.61 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.807 -2.384 -4.442 1 59.61 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.481 -3.586 -6.166 1 130.16 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.259 -2.519 -6.905 1 130.16 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -42.985 -3.983 -4.215 1 87.83 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.737 -2.902 -4.89 1 87.83 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.871 -0.362 -4.07 1 88.11 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.335 -0.724 -5.628 1 88.11 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.869 -0.061 -5.397 1 88.11 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.896 -0.581 -2.998 1 102.18 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.441 -1.973 -7.575 1 67.19 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -43.03 -1.66 -2.937 1 39.02 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #