data_5QDU # _model_server_result.job_id KoHpmdkO5KEvTf6-g7Ccfw _model_server_result.datetime_utc '2024-11-05 11:02:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5QDU # _exptl.entry_id 5QDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDU _cell.length_a 89.816 _cell.length_b 89.816 _cell.length_c 106.543 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 362 n n C C2 TRS sing 363 n n C C3 TRS sing 364 n n C N TRS sing 365 n n C1 O1 TRS sing 366 n n C1 H11 TRS sing 367 n n C1 H12 TRS sing 368 n n C2 O2 TRS sing 369 n n C2 H21 TRS sing 370 n n C2 H22 TRS sing 371 n n C3 O3 TRS sing 372 n n C3 H31 TRS sing 373 n n C3 H32 TRS sing 374 n n N HN1 TRS sing 375 n n N HN2 TRS sing 376 n n N HN3 TRS sing 377 n n O1 HO1 TRS sing 378 n n O2 HO2 TRS sing 379 n n O3 HO3 TRS sing 380 n n # _atom_sites.entry_id 5QDU _atom_sites.fract_transf_matrix[1][1] 0.011134 _atom_sites.fract_transf_matrix[1][2] 0.006428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GV1 A 1 401 1 GV1 LIG . C 2 GV1 A 1 402 2 GV1 LIG . D 2 GV1 A 1 403 3 GV1 LIG . E 2 GV1 A 1 404 4 GV1 LIG . F 3 TRS A 1 405 500 TRS TRS . G 4 HOH A 1 501 212 HOH HOH . G 4 HOH A 2 502 198 HOH HOH . G 4 HOH A 3 503 167 HOH HOH . G 4 HOH A 4 504 151 HOH HOH . G 4 HOH A 5 505 280 HOH HOH . G 4 HOH A 6 506 179 HOH HOH . G 4 HOH A 7 507 177 HOH HOH . G 4 HOH A 8 508 195 HOH HOH . G 4 HOH A 9 509 160 HOH HOH . G 4 HOH A 10 510 187 HOH HOH . G 4 HOH A 11 511 22 HOH HOH . G 4 HOH A 12 512 32 HOH HOH . G 4 HOH A 13 513 20 HOH HOH . G 4 HOH A 14 514 165 HOH HOH . G 4 HOH A 15 515 219 HOH HOH . G 4 HOH A 16 516 194 HOH HOH . G 4 HOH A 17 517 244 HOH HOH . G 4 HOH A 18 518 188 HOH HOH . G 4 HOH A 19 519 119 HOH HOH . G 4 HOH A 20 520 71 HOH HOH . G 4 HOH A 21 521 166 HOH HOH . G 4 HOH A 22 522 114 HOH HOH . G 4 HOH A 23 523 170 HOH HOH . G 4 HOH A 24 524 254 HOH HOH . G 4 HOH A 25 525 118 HOH HOH . G 4 HOH A 26 526 149 HOH HOH . G 4 HOH A 27 527 276 HOH HOH . G 4 HOH A 28 528 28 HOH HOH . G 4 HOH A 29 529 3 HOH HOH . G 4 HOH A 30 530 39 HOH HOH . G 4 HOH A 31 531 181 HOH HOH . G 4 HOH A 32 532 88 HOH HOH . G 4 HOH A 33 533 141 HOH HOH . G 4 HOH A 34 534 10 HOH HOH . G 4 HOH A 35 535 57 HOH HOH . G 4 HOH A 36 536 222 HOH HOH . G 4 HOH A 37 537 216 HOH HOH . G 4 HOH A 38 538 115 HOH HOH . G 4 HOH A 39 539 58 HOH HOH . G 4 HOH A 40 540 150 HOH HOH . G 4 HOH A 41 541 44 HOH HOH . G 4 HOH A 42 542 26 HOH HOH . G 4 HOH A 43 543 98 HOH HOH . G 4 HOH A 44 544 274 HOH HOH . G 4 HOH A 45 545 27 HOH HOH . G 4 HOH A 46 546 18 HOH HOH . G 4 HOH A 47 547 67 HOH HOH . G 4 HOH A 48 548 75 HOH HOH . G 4 HOH A 49 549 4 HOH HOH . G 4 HOH A 50 550 56 HOH HOH . G 4 HOH A 51 551 283 HOH HOH . G 4 HOH A 52 552 68 HOH HOH . G 4 HOH A 53 553 31 HOH HOH . G 4 HOH A 54 554 122 HOH HOH . G 4 HOH A 55 555 126 HOH HOH . G 4 HOH A 56 556 84 HOH HOH . G 4 HOH A 57 557 62 HOH HOH . G 4 HOH A 58 558 269 HOH HOH . G 4 HOH A 59 559 133 HOH HOH . G 4 HOH A 60 560 25 HOH HOH . G 4 HOH A 61 561 229 HOH HOH . G 4 HOH A 62 562 257 HOH HOH . G 4 HOH A 63 563 5 HOH HOH . G 4 HOH A 64 564 78 HOH HOH . G 4 HOH A 65 565 227 HOH HOH . G 4 HOH A 66 566 201 HOH HOH . G 4 HOH A 67 567 155 HOH HOH . G 4 HOH A 68 568 110 HOH HOH . G 4 HOH A 69 569 120 HOH HOH . G 4 HOH A 70 570 105 HOH HOH . G 4 HOH A 71 571 129 HOH HOH . G 4 HOH A 72 572 13 HOH HOH . G 4 HOH A 73 573 159 HOH HOH . G 4 HOH A 74 574 250 HOH HOH . G 4 HOH A 75 575 43 HOH HOH . G 4 HOH A 76 576 158 HOH HOH . G 4 HOH A 77 577 128 HOH HOH . G 4 HOH A 78 578 134 HOH HOH . G 4 HOH A 79 579 37 HOH HOH . G 4 HOH A 80 580 174 HOH HOH . G 4 HOH A 81 581 1 HOH HOH . G 4 HOH A 82 582 6 HOH HOH . G 4 HOH A 83 583 275 HOH HOH . G 4 HOH A 84 584 76 HOH HOH . G 4 HOH A 85 585 182 HOH HOH . G 4 HOH A 86 586 54 HOH HOH . G 4 HOH A 87 587 190 HOH HOH . G 4 HOH A 88 588 36 HOH HOH . G 4 HOH A 89 589 8 HOH HOH . G 4 HOH A 90 590 124 HOH HOH . G 4 HOH A 91 591 12 HOH HOH . G 4 HOH A 92 592 60 HOH HOH . G 4 HOH A 93 593 221 HOH HOH . G 4 HOH A 94 594 153 HOH HOH . G 4 HOH A 95 595 109 HOH HOH . G 4 HOH A 96 596 137 HOH HOH . G 4 HOH A 97 597 11 HOH HOH . G 4 HOH A 98 598 41 HOH HOH . G 4 HOH A 99 599 53 HOH HOH . G 4 HOH A 100 600 217 HOH HOH . G 4 HOH A 101 601 238 HOH HOH . G 4 HOH A 102 602 85 HOH HOH . G 4 HOH A 103 603 186 HOH HOH . G 4 HOH A 104 604 45 HOH HOH . G 4 HOH A 105 605 48 HOH HOH . G 4 HOH A 106 606 204 HOH HOH . G 4 HOH A 107 607 81 HOH HOH . G 4 HOH A 108 608 74 HOH HOH . G 4 HOH A 109 609 9 HOH HOH . G 4 HOH A 110 610 24 HOH HOH . G 4 HOH A 111 611 40 HOH HOH . G 4 HOH A 112 612 145 HOH HOH . G 4 HOH A 113 613 42 HOH HOH . G 4 HOH A 114 614 242 HOH HOH . G 4 HOH A 115 615 79 HOH HOH . G 4 HOH A 116 616 2 HOH HOH . G 4 HOH A 117 617 152 HOH HOH . G 4 HOH A 118 618 112 HOH HOH . G 4 HOH A 119 619 157 HOH HOH . G 4 HOH A 120 620 16 HOH HOH . G 4 HOH A 121 621 7 HOH HOH . G 4 HOH A 122 622 93 HOH HOH . G 4 HOH A 123 623 200 HOH HOH . G 4 HOH A 124 624 80 HOH HOH . G 4 HOH A 125 625 47 HOH HOH . G 4 HOH A 126 626 14 HOH HOH . G 4 HOH A 127 627 55 HOH HOH . G 4 HOH A 128 628 270 HOH HOH . G 4 HOH A 129 629 185 HOH HOH . G 4 HOH A 130 630 94 HOH HOH . G 4 HOH A 131 631 34 HOH HOH . G 4 HOH A 132 632 97 HOH HOH . G 4 HOH A 133 633 52 HOH HOH . G 4 HOH A 134 634 154 HOH HOH . G 4 HOH A 135 635 138 HOH HOH . G 4 HOH A 136 636 59 HOH HOH . G 4 HOH A 137 637 168 HOH HOH . G 4 HOH A 138 638 19 HOH HOH . G 4 HOH A 139 639 90 HOH HOH . G 4 HOH A 140 640 162 HOH HOH . G 4 HOH A 141 641 191 HOH HOH . G 4 HOH A 142 642 209 HOH HOH . G 4 HOH A 143 643 17 HOH HOH . G 4 HOH A 144 644 33 HOH HOH . G 4 HOH A 145 645 35 HOH HOH . G 4 HOH A 146 646 180 HOH HOH . G 4 HOH A 147 647 268 HOH HOH . G 4 HOH A 148 648 92 HOH HOH . G 4 HOH A 149 649 127 HOH HOH . G 4 HOH A 150 650 21 HOH HOH . G 4 HOH A 151 651 95 HOH HOH . G 4 HOH A 152 652 23 HOH HOH . G 4 HOH A 153 653 96 HOH HOH . G 4 HOH A 154 654 184 HOH HOH . G 4 HOH A 155 655 70 HOH HOH . G 4 HOH A 156 656 108 HOH HOH . G 4 HOH A 157 657 223 HOH HOH . G 4 HOH A 158 658 111 HOH HOH . G 4 HOH A 159 659 140 HOH HOH . G 4 HOH A 160 660 103 HOH HOH . G 4 HOH A 161 661 116 HOH HOH . G 4 HOH A 162 662 230 HOH HOH . G 4 HOH A 163 663 225 HOH HOH . G 4 HOH A 164 664 199 HOH HOH . G 4 HOH A 165 665 49 HOH HOH . G 4 HOH A 166 666 156 HOH HOH . G 4 HOH A 167 667 50 HOH HOH . G 4 HOH A 168 668 87 HOH HOH . G 4 HOH A 169 669 83 HOH HOH . G 4 HOH A 170 670 46 HOH HOH . G 4 HOH A 171 671 101 HOH HOH . G 4 HOH A 172 672 208 HOH HOH . G 4 HOH A 173 673 15 HOH HOH . G 4 HOH A 174 674 142 HOH HOH . G 4 HOH A 175 675 262 HOH HOH . G 4 HOH A 176 676 38 HOH HOH . G 4 HOH A 177 677 100 HOH HOH . G 4 HOH A 178 678 51 HOH HOH . G 4 HOH A 179 679 243 HOH HOH . G 4 HOH A 180 680 123 HOH HOH . G 4 HOH A 181 681 77 HOH HOH . G 4 HOH A 182 682 203 HOH HOH . G 4 HOH A 183 683 220 HOH HOH . G 4 HOH A 184 684 82 HOH HOH . G 4 HOH A 185 685 277 HOH HOH . G 4 HOH A 186 686 66 HOH HOH . G 4 HOH A 187 687 113 HOH HOH . G 4 HOH A 188 688 65 HOH HOH . G 4 HOH A 189 689 173 HOH HOH . G 4 HOH A 190 690 234 HOH HOH . G 4 HOH A 191 691 91 HOH HOH . G 4 HOH A 192 692 256 HOH HOH . G 4 HOH A 193 693 106 HOH HOH . G 4 HOH A 194 694 161 HOH HOH . G 4 HOH A 195 695 249 HOH HOH . G 4 HOH A 196 696 107 HOH HOH . G 4 HOH A 197 697 255 HOH HOH . G 4 HOH A 198 698 258 HOH HOH . G 4 HOH A 199 699 146 HOH HOH . G 4 HOH A 200 700 252 HOH HOH . G 4 HOH A 201 701 163 HOH HOH . G 4 HOH A 202 702 267 HOH HOH . G 4 HOH A 203 703 233 HOH HOH . G 4 HOH A 204 704 189 HOH HOH . G 4 HOH A 205 705 29 HOH HOH . G 4 HOH A 206 706 130 HOH HOH . G 4 HOH A 207 707 73 HOH HOH . G 4 HOH A 208 708 247 HOH HOH . G 4 HOH A 209 709 206 HOH HOH . G 4 HOH A 210 710 241 HOH HOH . G 4 HOH A 211 711 125 HOH HOH . G 4 HOH A 212 712 61 HOH HOH . G 4 HOH A 213 713 193 HOH HOH . G 4 HOH A 214 714 271 HOH HOH . G 4 HOH A 215 715 197 HOH HOH . G 4 HOH A 216 716 131 HOH HOH . G 4 HOH A 217 717 265 HOH HOH . G 4 HOH A 218 718 164 HOH HOH . G 4 HOH A 219 719 235 HOH HOH . G 4 HOH A 220 720 99 HOH HOH . G 4 HOH A 221 721 102 HOH HOH . G 4 HOH A 222 722 171 HOH HOH . G 4 HOH A 223 723 214 HOH HOH . G 4 HOH A 224 724 260 HOH HOH . G 4 HOH A 225 725 135 HOH HOH . G 4 HOH A 226 726 175 HOH HOH . G 4 HOH A 227 727 72 HOH HOH . G 4 HOH A 228 728 226 HOH HOH . G 4 HOH A 229 729 228 HOH HOH . G 4 HOH A 230 730 211 HOH HOH . G 4 HOH A 231 731 245 HOH HOH . G 4 HOH A 232 732 30 HOH HOH . G 4 HOH A 233 733 239 HOH HOH . G 4 HOH A 234 734 273 HOH HOH . G 4 HOH A 235 735 69 HOH HOH . G 4 HOH A 236 736 232 HOH HOH . G 4 HOH A 237 737 272 HOH HOH . G 4 HOH A 238 738 147 HOH HOH . G 4 HOH A 239 739 121 HOH HOH . G 4 HOH A 240 740 117 HOH HOH . G 4 HOH A 241 741 231 HOH HOH . G 4 HOH A 242 742 264 HOH HOH . G 4 HOH A 243 743 144 HOH HOH . G 4 HOH A 244 744 215 HOH HOH . G 4 HOH A 245 745 237 HOH HOH . G 4 HOH A 246 746 86 HOH HOH . G 4 HOH A 247 747 104 HOH HOH . G 4 HOH A 248 748 253 HOH HOH . G 4 HOH A 249 749 282 HOH HOH . G 4 HOH A 250 750 183 HOH HOH . G 4 HOH A 251 751 259 HOH HOH . G 4 HOH A 252 752 278 HOH HOH . G 4 HOH A 253 753 63 HOH HOH . G 4 HOH A 254 754 169 HOH HOH . G 4 HOH A 255 755 213 HOH HOH . G 4 HOH A 256 756 132 HOH HOH . G 4 HOH A 257 757 139 HOH HOH . G 4 HOH A 258 758 202 HOH HOH . G 4 HOH A 259 759 263 HOH HOH . G 4 HOH A 260 760 136 HOH HOH . G 4 HOH A 261 761 207 HOH HOH . G 4 HOH A 262 762 210 HOH HOH . G 4 HOH A 263 763 240 HOH HOH . G 4 HOH A 264 764 246 HOH HOH . G 4 HOH A 265 765 248 HOH HOH . G 4 HOH A 266 766 143 HOH HOH . G 4 HOH A 267 767 205 HOH HOH . G 4 HOH A 268 768 251 HOH HOH . G 4 HOH A 269 769 148 HOH HOH . G 4 HOH A 270 770 218 HOH HOH . G 4 HOH A 271 771 89 HOH HOH . G 4 HOH A 272 772 176 HOH HOH . G 4 HOH A 273 773 279 HOH HOH . G 4 HOH A 274 774 64 HOH HOH . G 4 HOH A 275 775 196 HOH HOH . G 4 HOH A 276 776 281 HOH HOH . G 4 HOH A 277 777 266 HOH HOH . G 4 HOH A 278 778 178 HOH HOH . G 4 HOH A 279 779 172 HOH HOH . G 4 HOH A 280 780 261 HOH HOH . G 4 HOH A 281 781 236 HOH HOH . G 4 HOH A 282 782 224 HOH HOH . G 4 HOH A 283 783 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . F 3 21.239 -40.898 -22.716 1 17.42 ? C TRS 405 A 1 HETATM 2 C C1 TRS . . . F 3 20.73 -39.82 -21.77 1 47.96 ? C1 TRS 405 A 1 HETATM 3 C C2 TRS . . . F 3 20.64 -40.833 -24.08 1 89.11 ? C2 TRS 405 A 1 HETATM 4 C C3 TRS . . . F 3 21.062 -42.265 -22.116 1 63.79 ? C3 TRS 405 A 1 HETATM 5 N N TRS . . . F 3 22.721 -40.701 -22.824 1 61.49 ? N TRS 405 A 1 HETATM 6 O O1 TRS . . . F 3 21.789 -38.972 -21.415 1 103.89 ? O1 TRS 405 A 1 HETATM 7 O O2 TRS . . . F 3 20.866 -39.516 -24.541 1 48.29 ? O2 TRS 405 A 1 HETATM 8 O O3 TRS . . . F 3 21.649 -42.191 -20.892 1 33.07 ? O3 TRS 405 A 1 HETATM 9 H H11 TRS . . . F 3 20.321 -40.288 -20.872 1 57.55 ? H11 TRS 405 A 1 HETATM 10 H H12 TRS . . . F 3 19.95 -39.24 -22.266 1 57.55 ? H12 TRS 405 A 1 HETATM 11 H H21 TRS . . . F 3 19.573 -41.054 -24.02 1 106.93 ? H21 TRS 405 A 1 HETATM 12 H H22 TRS . . . F 3 21.127 -41.566 -24.727 1 106.93 ? H22 TRS 405 A 1 HETATM 13 H H31 TRS . . . F 3 20.007 -42.52 -21.999 1 76.54 ? H31 TRS 405 A 1 HETATM 14 H H32 TRS . . . F 3 21.559 -43.034 -22.712 1 76.54 ? H32 TRS 405 A 1 HETATM 15 H HN1 TRS . . . F 3 23.146 -40.76 -21.884 1 73.79 ? HN1 TRS 405 A 1 HETATM 16 H HN2 TRS . . . F 3 23.123 -41.435 -23.43 1 73.79 ? HN2 TRS 405 A 1 HETATM 17 H HN3 TRS . . . F 3 22.916 -39.773 -23.233 1 73.79 ? HN3 TRS 405 A 1 HETATM 18 H HO1 TRS . . . F 3 21.466 -38.287 -20.814 1 124.66 ? HO1 TRS 405 A 1 HETATM 19 H HO2 TRS . . . F 3 20.495 -39.417 -25.429 1 57.94 ? HO2 TRS 405 A 1 HETATM 20 H HO3 TRS . . . F 3 22.005 -41.302 -20.759 1 39.69 ? HO3 TRS 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #