data_5QDW # _model_server_result.job_id Nuw5LYiqQrvguRI3UzXoOA _model_server_result.datetime_utc '2024-11-21 23:36:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QDW # _exptl.entry_id 5QDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.242 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methoxy-N-[(1R)-1-phenylethyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDW _cell.length_a 90.011 _cell.length_b 90.011 _cell.length_c 106.714 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CG ASP 240 A ASP 240 1_555 A OG SER 242 A SER 242 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A CG ASP 240 A ASP 240 1_555 A OG SER 242 A SER 242 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C11 H15 N O2' _chem_comp.formula_weight 193.242 _chem_comp.id JGJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-methoxy-N-[(1R)-1-phenylethyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C07 JGJ doub 173 n y C06 C05 JGJ sing 174 n y C07 C08 JGJ sing 175 n y C05 C04 JGJ doub 176 n y C08 C03 JGJ doub 177 n y C04 C03 JGJ sing 178 n y C03 C02 JGJ sing 179 n n O11 C10 JGJ doub 180 n n C12 C10 JGJ sing 181 n n C12 O13 JGJ sing 182 n n C10 N09 JGJ sing 183 n n O13 C14 JGJ sing 184 n n N09 C02 JGJ sing 185 n n C02 C01 JGJ sing 186 n n C01 H013 JGJ sing 187 n n C01 H011 JGJ sing 188 n n C01 H012 JGJ sing 189 n n C02 H021 JGJ sing 190 n n C04 H041 JGJ sing 191 n n C05 H051 JGJ sing 192 n n C06 H061 JGJ sing 193 n n C07 H071 JGJ sing 194 n n C08 H081 JGJ sing 195 n n N09 H091 JGJ sing 196 n n C12 H121 JGJ sing 197 n n C12 H122 JGJ sing 198 n n C14 H142 JGJ sing 199 n n C14 H143 JGJ sing 200 n n C14 H141 JGJ sing 201 n n # _atom_sites.entry_id 5QDW _atom_sites.fract_transf_matrix[1][1] 0.01111 _atom_sites.fract_transf_matrix[1][2] 0.006414 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JGJ A 1 401 1 JGJ LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 104 HOH HOH . D 4 HOH A 2 502 149 HOH HOH . D 4 HOH A 3 503 37 HOH HOH . D 4 HOH A 4 504 20 HOH HOH . D 4 HOH A 5 505 99 HOH HOH . D 4 HOH A 6 506 73 HOH HOH . D 4 HOH A 7 507 30 HOH HOH . D 4 HOH A 8 508 7 HOH HOH . D 4 HOH A 9 509 100 HOH HOH . D 4 HOH A 10 510 61 HOH HOH . D 4 HOH A 11 511 52 HOH HOH . D 4 HOH A 12 512 79 HOH HOH . D 4 HOH A 13 513 119 HOH HOH . D 4 HOH A 14 514 12 HOH HOH . D 4 HOH A 15 515 91 HOH HOH . D 4 HOH A 16 516 107 HOH HOH . D 4 HOH A 17 517 54 HOH HOH . D 4 HOH A 18 518 108 HOH HOH . D 4 HOH A 19 519 43 HOH HOH . D 4 HOH A 20 520 44 HOH HOH . D 4 HOH A 21 521 14 HOH HOH . D 4 HOH A 22 522 24 HOH HOH . D 4 HOH A 23 523 128 HOH HOH . D 4 HOH A 24 524 4 HOH HOH . D 4 HOH A 25 525 71 HOH HOH . D 4 HOH A 26 526 18 HOH HOH . D 4 HOH A 27 527 25 HOH HOH . D 4 HOH A 28 528 85 HOH HOH . D 4 HOH A 29 529 48 HOH HOH . D 4 HOH A 30 530 49 HOH HOH . D 4 HOH A 31 531 26 HOH HOH . D 4 HOH A 32 532 82 HOH HOH . D 4 HOH A 33 533 3 HOH HOH . D 4 HOH A 34 534 40 HOH HOH . D 4 HOH A 35 535 93 HOH HOH . D 4 HOH A 36 536 2 HOH HOH . D 4 HOH A 37 537 98 HOH HOH . D 4 HOH A 38 538 39 HOH HOH . D 4 HOH A 39 539 77 HOH HOH . D 4 HOH A 40 540 92 HOH HOH . D 4 HOH A 41 541 50 HOH HOH . D 4 HOH A 42 542 66 HOH HOH . D 4 HOH A 43 543 133 HOH HOH . D 4 HOH A 44 544 15 HOH HOH . D 4 HOH A 45 545 55 HOH HOH . D 4 HOH A 46 546 88 HOH HOH . D 4 HOH A 47 547 63 HOH HOH . D 4 HOH A 48 548 10 HOH HOH . D 4 HOH A 49 549 59 HOH HOH . D 4 HOH A 50 550 53 HOH HOH . D 4 HOH A 51 551 31 HOH HOH . D 4 HOH A 52 552 70 HOH HOH . D 4 HOH A 53 553 5 HOH HOH . D 4 HOH A 54 554 69 HOH HOH . D 4 HOH A 55 555 13 HOH HOH . D 4 HOH A 56 556 80 HOH HOH . D 4 HOH A 57 557 86 HOH HOH . D 4 HOH A 58 558 134 HOH HOH . D 4 HOH A 59 559 6 HOH HOH . D 4 HOH A 60 560 32 HOH HOH . D 4 HOH A 61 561 23 HOH HOH . D 4 HOH A 62 562 121 HOH HOH . D 4 HOH A 63 563 106 HOH HOH . D 4 HOH A 64 564 11 HOH HOH . D 4 HOH A 65 565 38 HOH HOH . D 4 HOH A 66 566 84 HOH HOH . D 4 HOH A 67 567 8 HOH HOH . D 4 HOH A 68 568 1 HOH HOH . D 4 HOH A 69 569 97 HOH HOH . D 4 HOH A 70 570 75 HOH HOH . D 4 HOH A 71 571 16 HOH HOH . D 4 HOH A 72 572 27 HOH HOH . D 4 HOH A 73 573 35 HOH HOH . D 4 HOH A 74 574 111 HOH HOH . D 4 HOH A 75 575 57 HOH HOH . D 4 HOH A 76 576 83 HOH HOH . D 4 HOH A 77 577 76 HOH HOH . D 4 HOH A 78 578 129 HOH HOH . D 4 HOH A 79 579 56 HOH HOH . D 4 HOH A 80 580 17 HOH HOH . D 4 HOH A 81 581 87 HOH HOH . D 4 HOH A 82 582 9 HOH HOH . D 4 HOH A 83 583 148 HOH HOH . D 4 HOH A 84 584 46 HOH HOH . D 4 HOH A 85 585 120 HOH HOH . D 4 HOH A 86 586 45 HOH HOH . D 4 HOH A 87 587 36 HOH HOH . D 4 HOH A 88 588 33 HOH HOH . D 4 HOH A 89 589 21 HOH HOH . D 4 HOH A 90 590 136 HOH HOH . D 4 HOH A 91 591 67 HOH HOH . D 4 HOH A 92 592 127 HOH HOH . D 4 HOH A 93 593 41 HOH HOH . D 4 HOH A 94 594 95 HOH HOH . D 4 HOH A 95 595 130 HOH HOH . D 4 HOH A 96 596 22 HOH HOH . D 4 HOH A 97 597 103 HOH HOH . D 4 HOH A 98 598 126 HOH HOH . D 4 HOH A 99 599 72 HOH HOH . D 4 HOH A 100 600 152 HOH HOH . D 4 HOH A 101 601 51 HOH HOH . D 4 HOH A 102 602 94 HOH HOH . D 4 HOH A 103 603 141 HOH HOH . D 4 HOH A 104 604 125 HOH HOH . D 4 HOH A 105 605 19 HOH HOH . D 4 HOH A 106 606 135 HOH HOH . D 4 HOH A 107 607 150 HOH HOH . D 4 HOH A 108 608 47 HOH HOH . D 4 HOH A 109 609 122 HOH HOH . D 4 HOH A 110 610 114 HOH HOH . D 4 HOH A 111 611 96 HOH HOH . D 4 HOH A 112 612 90 HOH HOH . D 4 HOH A 113 613 29 HOH HOH . D 4 HOH A 114 614 123 HOH HOH . D 4 HOH A 115 615 81 HOH HOH . D 4 HOH A 116 616 78 HOH HOH . D 4 HOH A 117 617 42 HOH HOH . D 4 HOH A 118 618 34 HOH HOH . D 4 HOH A 119 619 146 HOH HOH . D 4 HOH A 120 620 68 HOH HOH . D 4 HOH A 121 621 110 HOH HOH . D 4 HOH A 122 622 147 HOH HOH . D 4 HOH A 123 623 89 HOH HOH . D 4 HOH A 124 624 138 HOH HOH . D 4 HOH A 125 625 65 HOH HOH . D 4 HOH A 126 626 151 HOH HOH . D 4 HOH A 127 627 28 HOH HOH . D 4 HOH A 128 628 117 HOH HOH . D 4 HOH A 129 629 60 HOH HOH . D 4 HOH A 130 630 115 HOH HOH . D 4 HOH A 131 631 112 HOH HOH . D 4 HOH A 132 632 101 HOH HOH . D 4 HOH A 133 633 153 HOH HOH . D 4 HOH A 134 634 145 HOH HOH . D 4 HOH A 135 635 144 HOH HOH . D 4 HOH A 136 636 142 HOH HOH . D 4 HOH A 137 637 143 HOH HOH . D 4 HOH A 138 638 132 HOH HOH . D 4 HOH A 139 639 113 HOH HOH . D 4 HOH A 140 640 109 HOH HOH . D 4 HOH A 141 641 139 HOH HOH . D 4 HOH A 142 642 137 HOH HOH . D 4 HOH A 143 643 131 HOH HOH . D 4 HOH A 144 644 140 HOH HOH . D 4 HOH A 145 645 116 HOH HOH . D 4 HOH A 146 646 62 HOH HOH . D 4 HOH A 147 647 124 HOH HOH . D 4 HOH A 148 648 64 HOH HOH . D 4 HOH A 149 649 118 HOH HOH . D 4 HOH A 150 650 102 HOH HOH . D 4 HOH A 151 651 105 HOH HOH . D 4 HOH A 152 652 58 HOH HOH . D 4 HOH A 153 653 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JGJ . D . B 2 -37.388 34.866 -6.283 0.15 36.68 ? C10 JGJ 401 A 1 HETATM 2 C C01 JGJ . D . B 2 -35.31 32.65 -4.305 0.15 12.13 ? C01 JGJ 401 A 1 HETATM 3 C C02 JGJ . D . B 2 -36.143 32.948 -5.531 0.15 13.33 ? C02 JGJ 401 A 1 HETATM 4 C C03 JGJ . D . B 2 -35.531 32.315 -6.698 0.15 16.93 ? C03 JGJ 401 A 1 HETATM 5 C C04 JGJ . D . B 2 -34.305 32.517 -6.97 0.15 18.43 ? C04 JGJ 401 A 1 HETATM 6 C C05 JGJ . D . B 2 -33.725 31.93 -8.061 0.15 22.61 ? C05 JGJ 401 A 1 HETATM 7 C C06 JGJ . D . B 2 -34.433 31.131 -8.866 0.15 28.25 ? C06 JGJ 401 A 1 HETATM 8 C C07 JGJ . D . B 2 -35.702 30.911 -8.581 0.15 16.96 ? C07 JGJ 401 A 1 HETATM 9 C C08 JGJ . D . B 2 -36.262 31.506 -7.493 0.15 22.52 ? C08 JGJ 401 A 1 HETATM 10 N N09 JGJ . D . B 2 -36.258 34.33 -5.785 0.15 35.52 ? N09 JGJ 401 A 1 HETATM 11 O O11 JGJ . D . B 2 -38.305 34.234 -6.553 0.15 31.66 ? O11 JGJ 401 A 1 HETATM 12 C C12 JGJ . D . B 2 -37.334 36.203 -6.448 0.15 23.28 ? C12 JGJ 401 A 1 HETATM 13 O O13 JGJ . D . B 2 -36.053 36.542 -6.101 0.15 30.12 ? O13 JGJ 401 A 1 HETATM 14 C C14 JGJ . D . B 2 -35.907 37.895 -5.885 0.15 10.72 ? C14 JGJ 401 A 1 HETATM 15 H H013 JGJ . D . B 2 -35.118 31.576 -4.192 0.15 14.56 ? H013 JGJ 401 A 1 HETATM 16 H H011 JGJ . D . B 2 -35.753 32.988 -3.366 0.15 14.56 ? H011 JGJ 401 A 1 HETATM 17 H H012 JGJ . D . B 2 -34.327 33.128 -4.371 0.15 14.56 ? H012 JGJ 401 A 1 HETATM 18 H H021 JGJ . D . B 2 -37.167 32.539 -5.359 0.15 16 ? H021 JGJ 401 A 1 HETATM 19 H H041 JGJ . D . B 2 -33.703 33.17 -6.339 0.15 22.12 ? H041 JGJ 401 A 1 HETATM 20 H H051 JGJ . D . B 2 -32.667 32.116 -8.284 0.15 27.13 ? H051 JGJ 401 A 1 HETATM 21 H H061 JGJ . D . B 2 -33.976 30.659 -9.732 0.15 33.9 ? H061 JGJ 401 A 1 HETATM 22 H H071 JGJ . D . B 2 -36.292 30.263 -9.223 0.15 20.35 ? H071 JGJ 401 A 1 HETATM 23 H H081 JGJ . D . B 2 -37.316 31.316 -7.279 0.15 27.02 ? H081 JGJ 401 A 1 HETATM 24 H H091 JGJ . D . B 2 -35.476 34.923 -5.564 0.15 42.62 ? H091 JGJ 401 A 1 HETATM 25 H H121 JGJ . D . B 2 -38.07 36.746 -5.818 0.15 27.94 ? H121 JGJ 401 A 1 HETATM 26 H H122 JGJ . D . B 2 -37.562 36.446 -7.508 0.15 27.94 ? H122 JGJ 401 A 1 HETATM 27 H H142 JGJ . D . B 2 -34.884 38.256 -6.059 0.15 12.87 ? H142 JGJ 401 A 1 HETATM 28 H H143 JGJ . D . B 2 -36.145 38.031 -4.826 0.15 12.87 ? H143 JGJ 401 A 1 HETATM 29 H H141 JGJ . D . B 2 -36.592 38.519 -6.469 0.15 12.87 ? H141 JGJ 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #