data_5QDY # _model_server_result.job_id qydBTUdoVreGHao4G4Pd4g _model_server_result.datetime_utc '2024-11-22 00:06:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QDY # _exptl.entry_id 5QDY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.242 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-3-(thiophen-2-yl)-1H-pyrazol-5-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDY _cell.length_a 90.281 _cell.length_b 90.281 _cell.length_c 107.176 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H9 N3 S' _chem_comp.formula_weight 179.242 _chem_comp.id MPV _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-3-(thiophen-2-yl)-1H-pyrazol-5-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPV doub 237 n y C1 C5 MPV sing 238 n y C2 N3 MPV sing 239 n y C2 N12 MPV sing 240 n n N3 N4 MPV sing 241 n y N3 C11 MPV sing 242 n n N4 C5 MPV doub 243 n y C5 C6 MPV sing 244 n y C6 S7 MPV sing 245 n y C6 C10 MPV doub 246 n y S7 C8 MPV sing 247 n y C8 C9 MPV doub 248 n y C9 C10 MPV sing 249 n y C1 H1 MPV sing 250 n n C8 H8 MPV sing 251 n n C9 H9 MPV sing 252 n n C10 H10 MPV sing 253 n n C11 H11 MPV sing 254 n n C11 H11A MPV sing 255 n n C11 H11B MPV sing 256 n n N12 HN12 MPV sing 257 n n N12 HN1A MPV sing 258 n n # _atom_sites.entry_id 5QDY _atom_sites.fract_transf_matrix[1][1] 0.011077 _atom_sites.fract_transf_matrix[1][2] 0.006395 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPV A 1 401 1 MPV LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 121 HOH HOH . D 4 HOH A 2 502 188 HOH HOH . D 4 HOH A 3 503 67 HOH HOH . D 4 HOH A 4 504 148 HOH HOH . D 4 HOH A 5 505 159 HOH HOH . D 4 HOH A 6 506 145 HOH HOH . D 4 HOH A 7 507 60 HOH HOH . D 4 HOH A 8 508 196 HOH HOH . D 4 HOH A 9 509 147 HOH HOH . D 4 HOH A 10 510 118 HOH HOH . D 4 HOH A 11 511 180 HOH HOH . D 4 HOH A 12 512 84 HOH HOH . D 4 HOH A 13 513 128 HOH HOH . D 4 HOH A 14 514 136 HOH HOH . D 4 HOH A 15 515 131 HOH HOH . D 4 HOH A 16 516 11 HOH HOH . D 4 HOH A 17 517 19 HOH HOH . D 4 HOH A 18 518 30 HOH HOH . D 4 HOH A 19 519 166 HOH HOH . D 4 HOH A 20 520 7 HOH HOH . D 4 HOH A 21 521 63 HOH HOH . D 4 HOH A 22 522 57 HOH HOH . D 4 HOH A 23 523 42 HOH HOH . D 4 HOH A 24 524 26 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 6 HOH HOH . D 4 HOH A 27 527 199 HOH HOH . D 4 HOH A 28 528 21 HOH HOH . D 4 HOH A 29 529 17 HOH HOH . D 4 HOH A 30 530 65 HOH HOH . D 4 HOH A 31 531 22 HOH HOH . D 4 HOH A 32 532 116 HOH HOH . D 4 HOH A 33 533 37 HOH HOH . D 4 HOH A 34 534 105 HOH HOH . D 4 HOH A 35 535 112 HOH HOH . D 4 HOH A 36 536 56 HOH HOH . D 4 HOH A 37 537 163 HOH HOH . D 4 HOH A 38 538 55 HOH HOH . D 4 HOH A 39 539 33 HOH HOH . D 4 HOH A 40 540 178 HOH HOH . D 4 HOH A 41 541 23 HOH HOH . D 4 HOH A 42 542 8 HOH HOH . D 4 HOH A 43 543 125 HOH HOH . D 4 HOH A 44 544 189 HOH HOH . D 4 HOH A 45 545 52 HOH HOH . D 4 HOH A 46 546 120 HOH HOH . D 4 HOH A 47 547 79 HOH HOH . D 4 HOH A 48 548 124 HOH HOH . D 4 HOH A 49 549 24 HOH HOH . D 4 HOH A 50 550 174 HOH HOH . D 4 HOH A 51 551 3 HOH HOH . D 4 HOH A 52 552 27 HOH HOH . D 4 HOH A 53 553 139 HOH HOH . D 4 HOH A 54 554 144 HOH HOH . D 4 HOH A 55 555 1 HOH HOH . D 4 HOH A 56 556 51 HOH HOH . D 4 HOH A 57 557 111 HOH HOH . D 4 HOH A 58 558 88 HOH HOH . D 4 HOH A 59 559 103 HOH HOH . D 4 HOH A 60 560 13 HOH HOH . D 4 HOH A 61 561 198 HOH HOH . D 4 HOH A 62 562 152 HOH HOH . D 4 HOH A 63 563 72 HOH HOH . D 4 HOH A 64 564 75 HOH HOH . D 4 HOH A 65 565 44 HOH HOH . D 4 HOH A 66 566 110 HOH HOH . D 4 HOH A 67 567 4 HOH HOH . D 4 HOH A 68 568 81 HOH HOH . D 4 HOH A 69 569 31 HOH HOH . D 4 HOH A 70 570 64 HOH HOH . D 4 HOH A 71 571 97 HOH HOH . D 4 HOH A 72 572 40 HOH HOH . D 4 HOH A 73 573 168 HOH HOH . D 4 HOH A 74 574 171 HOH HOH . D 4 HOH A 75 575 90 HOH HOH . D 4 HOH A 76 576 184 HOH HOH . D 4 HOH A 77 577 203 HOH HOH . D 4 HOH A 78 578 187 HOH HOH . D 4 HOH A 79 579 151 HOH HOH . D 4 HOH A 80 580 16 HOH HOH . D 4 HOH A 81 581 165 HOH HOH . D 4 HOH A 82 582 96 HOH HOH . D 4 HOH A 83 583 107 HOH HOH . D 4 HOH A 84 584 91 HOH HOH . D 4 HOH A 85 585 109 HOH HOH . D 4 HOH A 86 586 5 HOH HOH . D 4 HOH A 87 587 58 HOH HOH . D 4 HOH A 88 588 39 HOH HOH . D 4 HOH A 89 589 10 HOH HOH . D 4 HOH A 90 590 82 HOH HOH . D 4 HOH A 91 591 95 HOH HOH . D 4 HOH A 92 592 46 HOH HOH . D 4 HOH A 93 593 73 HOH HOH . D 4 HOH A 94 594 9 HOH HOH . D 4 HOH A 95 595 12 HOH HOH . D 4 HOH A 96 596 70 HOH HOH . D 4 HOH A 97 597 2 HOH HOH . D 4 HOH A 98 598 14 HOH HOH . D 4 HOH A 99 599 98 HOH HOH . D 4 HOH A 100 600 130 HOH HOH . D 4 HOH A 101 601 77 HOH HOH . D 4 HOH A 102 602 15 HOH HOH . D 4 HOH A 103 603 85 HOH HOH . D 4 HOH A 104 604 32 HOH HOH . D 4 HOH A 105 605 170 HOH HOH . D 4 HOH A 106 606 87 HOH HOH . D 4 HOH A 107 607 162 HOH HOH . D 4 HOH A 108 608 123 HOH HOH . D 4 HOH A 109 609 89 HOH HOH . D 4 HOH A 110 610 106 HOH HOH . D 4 HOH A 111 611 41 HOH HOH . D 4 HOH A 112 612 54 HOH HOH . D 4 HOH A 113 613 36 HOH HOH . D 4 HOH A 114 614 59 HOH HOH . D 4 HOH A 115 615 45 HOH HOH . D 4 HOH A 116 616 34 HOH HOH . D 4 HOH A 117 617 102 HOH HOH . D 4 HOH A 118 618 146 HOH HOH . D 4 HOH A 119 619 186 HOH HOH . D 4 HOH A 120 620 99 HOH HOH . D 4 HOH A 121 621 94 HOH HOH . D 4 HOH A 122 622 175 HOH HOH . D 4 HOH A 123 623 38 HOH HOH . D 4 HOH A 124 624 164 HOH HOH . D 4 HOH A 125 625 93 HOH HOH . D 4 HOH A 126 626 50 HOH HOH . D 4 HOH A 127 627 35 HOH HOH . D 4 HOH A 128 628 43 HOH HOH . D 4 HOH A 129 629 74 HOH HOH . D 4 HOH A 130 630 47 HOH HOH . D 4 HOH A 131 631 185 HOH HOH . D 4 HOH A 132 632 101 HOH HOH . D 4 HOH A 133 633 169 HOH HOH . D 4 HOH A 134 634 100 HOH HOH . D 4 HOH A 135 635 76 HOH HOH . D 4 HOH A 136 636 18 HOH HOH . D 4 HOH A 137 637 138 HOH HOH . D 4 HOH A 138 638 83 HOH HOH . D 4 HOH A 139 639 119 HOH HOH . D 4 HOH A 140 640 20 HOH HOH . D 4 HOH A 141 641 192 HOH HOH . D 4 HOH A 142 642 86 HOH HOH . D 4 HOH A 143 643 122 HOH HOH . D 4 HOH A 144 644 150 HOH HOH . D 4 HOH A 145 645 108 HOH HOH . D 4 HOH A 146 646 71 HOH HOH . D 4 HOH A 147 647 48 HOH HOH . D 4 HOH A 148 648 49 HOH HOH . D 4 HOH A 149 649 154 HOH HOH . D 4 HOH A 150 650 202 HOH HOH . D 4 HOH A 151 651 177 HOH HOH . D 4 HOH A 152 652 194 HOH HOH . D 4 HOH A 153 653 69 HOH HOH . D 4 HOH A 154 654 126 HOH HOH . D 4 HOH A 155 655 204 HOH HOH . D 4 HOH A 156 656 127 HOH HOH . D 4 HOH A 157 657 28 HOH HOH . D 4 HOH A 158 658 114 HOH HOH . D 4 HOH A 159 659 113 HOH HOH . D 4 HOH A 160 660 153 HOH HOH . D 4 HOH A 161 661 179 HOH HOH . D 4 HOH A 162 662 182 HOH HOH . D 4 HOH A 163 663 161 HOH HOH . D 4 HOH A 164 664 176 HOH HOH . D 4 HOH A 165 665 172 HOH HOH . D 4 HOH A 166 666 53 HOH HOH . D 4 HOH A 167 667 181 HOH HOH . D 4 HOH A 168 668 129 HOH HOH . D 4 HOH A 169 669 160 HOH HOH . D 4 HOH A 170 670 132 HOH HOH . D 4 HOH A 171 671 183 HOH HOH . D 4 HOH A 172 672 104 HOH HOH . D 4 HOH A 173 673 193 HOH HOH . D 4 HOH A 174 674 29 HOH HOH . D 4 HOH A 175 675 158 HOH HOH . D 4 HOH A 176 676 68 HOH HOH . D 4 HOH A 177 677 92 HOH HOH . D 4 HOH A 178 678 66 HOH HOH . D 4 HOH A 179 679 143 HOH HOH . D 4 HOH A 180 680 142 HOH HOH . D 4 HOH A 181 681 201 HOH HOH . D 4 HOH A 182 682 156 HOH HOH . D 4 HOH A 183 683 200 HOH HOH . D 4 HOH A 184 684 157 HOH HOH . D 4 HOH A 185 685 190 HOH HOH . D 4 HOH A 186 686 149 HOH HOH . D 4 HOH A 187 687 191 HOH HOH . D 4 HOH A 188 688 78 HOH HOH . D 4 HOH A 189 689 173 HOH HOH . D 4 HOH A 190 690 61 HOH HOH . D 4 HOH A 191 691 134 HOH HOH . D 4 HOH A 192 692 137 HOH HOH . D 4 HOH A 193 693 117 HOH HOH . D 4 HOH A 194 694 195 HOH HOH . D 4 HOH A 195 695 167 HOH HOH . D 4 HOH A 196 696 115 HOH HOH . D 4 HOH A 197 697 135 HOH HOH . D 4 HOH A 198 698 155 HOH HOH . D 4 HOH A 199 699 197 HOH HOH . D 4 HOH A 200 700 80 HOH HOH . D 4 HOH A 201 701 62 HOH HOH . D 4 HOH A 202 702 133 HOH HOH . D 4 HOH A 203 703 140 HOH HOH . D 4 HOH A 204 704 141 HOH HOH . D 4 HOH A 205 705 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPV . C . B 2 56.985 -41.302 -25.793 0.14 29.79 ? C1 MPV 401 A 1 HETATM 2 C C1 MPV . D . B 2 56.985 -41.302 -25.793 0.14 29.79 ? C1 MPV 401 A 1 HETATM 3 C C2 MPV . C . B 2 58.247 -41.716 -26.161 0.14 38.31 ? C2 MPV 401 A 1 HETATM 4 C C2 MPV . D . B 2 58.247 -41.716 -26.161 0.14 38.31 ? C2 MPV 401 A 1 HETATM 5 N N3 MPV . C . B 2 58.837 -40.583 -26.611 0.14 38.3 ? N3 MPV 401 A 1 HETATM 6 N N3 MPV . D . B 2 58.837 -40.583 -26.611 0.14 38.3 ? N3 MPV 401 A 1 HETATM 7 N N4 MPV . C . B 2 58.041 -39.522 -26.516 0.14 46.26 ? N4 MPV 401 A 1 HETATM 8 N N4 MPV . D . B 2 58.041 -39.522 -26.516 0.14 46.26 ? N4 MPV 401 A 1 HETATM 9 C C5 MPV . C . B 2 56.898 -39.938 -26.053 0.14 39.17 ? C5 MPV 401 A 1 HETATM 10 C C5 MPV . D . B 2 56.898 -39.938 -26.053 0.14 39.17 ? C5 MPV 401 A 1 HETATM 11 C C6 MPV . C . B 2 55.742 -39.066 -25.83 0.14 32.46 ? C6 MPV 401 A 1 HETATM 12 C C6 MPV . D . B 2 55.742 -39.066 -25.83 0.14 32.46 ? C6 MPV 401 A 1 HETATM 13 S S7 MPV . C . B 2 54.478 -39.141 -24.647 0.14 42.76 ? S7 MPV 401 A 1 HETATM 14 S S7 MPV . D . B 2 54.478 -39.141 -24.647 0.14 42.76 ? S7 MPV 401 A 1 HETATM 15 C C8 MPV . C . B 2 53.769 -37.794 -25.22 0.14 48.41 ? C8 MPV 401 A 1 HETATM 16 C C8 MPV . D . B 2 53.769 -37.794 -25.22 0.14 48.41 ? C8 MPV 401 A 1 HETATM 17 C C9 MPV . C . B 2 54.406 -37.273 -26.248 0.14 39.72 ? C9 MPV 401 A 1 HETATM 18 C C9 MPV . D . B 2 54.406 -37.273 -26.248 0.14 39.72 ? C9 MPV 401 A 1 HETATM 19 C C10 MPV . C . B 2 55.523 -38.001 -26.607 0.14 35.51 ? C10 MPV 401 A 1 HETATM 20 C C10 MPV . D . B 2 55.523 -38.001 -26.607 0.14 35.51 ? C10 MPV 401 A 1 HETATM 21 C C11 MPV . C . B 2 60.211 -40.487 -27.101 0.14 51.45 ? C11 MPV 401 A 1 HETATM 22 C C11 MPV . D . B 2 60.211 -40.487 -27.101 0.14 51.45 ? C11 MPV 401 A 1 HETATM 23 N N12 MPV . C . B 2 58.819 -42.986 -26.112 0.14 36.35 ? N12 MPV 401 A 1 HETATM 24 N N12 MPV . D . B 2 58.819 -42.986 -26.112 0.14 36.35 ? N12 MPV 401 A 1 HETATM 25 H H1 MPV . C . B 2 56.203 -41.929 -25.389 0.14 35.75 ? H1 MPV 401 A 1 HETATM 26 H H1 MPV . D . B 2 56.203 -41.929 -25.389 0.14 35.75 ? H1 MPV 401 A 1 HETATM 27 H H8 MPV . C . B 2 52.852 -37.354 -24.801 0.14 58.09 ? H8 MPV 401 A 1 HETATM 28 H H8 MPV . D . B 2 52.852 -37.354 -24.801 0.14 58.09 ? H8 MPV 401 A 1 HETATM 29 H H9 MPV . C . B 2 54.092 -36.363 -26.78 0.14 47.66 ? H9 MPV 401 A 1 HETATM 30 H H9 MPV . D . B 2 54.092 -36.363 -26.78 0.14 47.66 ? H9 MPV 401 A 1 HETATM 31 H H10 MPV . C . B 2 56.122 -37.674 -27.458 0.14 42.61 ? H10 MPV 401 A 1 HETATM 32 H H10 MPV . D . B 2 56.122 -37.674 -27.458 0.14 42.61 ? H10 MPV 401 A 1 HETATM 33 H H11 MPV . C . B 2 60.473 -39.447 -27.367 0.14 61.74 ? H11 MPV 401 A 1 HETATM 34 H H11 MPV . D . B 2 60.473 -39.447 -27.367 0.14 61.74 ? H11 MPV 401 A 1 HETATM 35 H H11A MPV . C . B 2 60.37 -41.102 -27.999 0.14 61.74 ? H11A MPV 401 A 1 HETATM 36 H H11A MPV . D . B 2 60.37 -41.102 -27.999 0.14 61.74 ? H11A MPV 401 A 1 HETATM 37 H H11B MPV . C . B 2 60.955 -40.824 -26.349 0.14 61.74 ? H11B MPV 401 A 1 HETATM 38 H H11B MPV . D . B 2 60.955 -40.824 -26.349 0.14 61.74 ? H11B MPV 401 A 1 HETATM 39 H HN12 MPV . C . B 2 59.764 -43.106 -26.425 0.14 43.62 ? HN12 MPV 401 A 1 HETATM 40 H HN12 MPV . D . B 2 59.764 -43.106 -26.425 0.14 43.62 ? HN12 MPV 401 A 1 HETATM 41 H HN1A MPV . C . B 2 58.343 -43.799 -25.78 0.14 43.62 ? HN1A MPV 401 A 1 HETATM 42 H HN1A MPV . D . B 2 58.343 -43.799 -25.78 0.14 43.62 ? HN1A MPV 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #