data_5QDY # _model_server_result.job_id BdD4enH-1UWdgAAvMG5Fig _model_server_result.datetime_utc '2024-11-21 23:55:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qdy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QDY # _exptl.entry_id 5QDY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QDY _cell.length_a 90.281 _cell.length_b 90.281 _cell.length_c 107.176 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QDY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 356 n n C C2 TRS sing 357 n n C C3 TRS sing 358 n n C N TRS sing 359 n n C1 O1 TRS sing 360 n n C1 H11 TRS sing 361 n n C1 H12 TRS sing 362 n n C2 O2 TRS sing 363 n n C2 H21 TRS sing 364 n n C2 H22 TRS sing 365 n n C3 O3 TRS sing 366 n n C3 H31 TRS sing 367 n n C3 H32 TRS sing 368 n n N HN1 TRS sing 369 n n N HN2 TRS sing 370 n n N HN3 TRS sing 371 n n O1 HO1 TRS sing 372 n n O2 HO2 TRS sing 373 n n O3 HO3 TRS sing 374 n n # _atom_sites.entry_id 5QDY _atom_sites.fract_transf_matrix[1][1] 0.011077 _atom_sites.fract_transf_matrix[1][2] 0.006395 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPV A 1 401 1 MPV LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 121 HOH HOH . D 4 HOH A 2 502 188 HOH HOH . D 4 HOH A 3 503 67 HOH HOH . D 4 HOH A 4 504 148 HOH HOH . D 4 HOH A 5 505 159 HOH HOH . D 4 HOH A 6 506 145 HOH HOH . D 4 HOH A 7 507 60 HOH HOH . D 4 HOH A 8 508 196 HOH HOH . D 4 HOH A 9 509 147 HOH HOH . D 4 HOH A 10 510 118 HOH HOH . D 4 HOH A 11 511 180 HOH HOH . D 4 HOH A 12 512 84 HOH HOH . D 4 HOH A 13 513 128 HOH HOH . D 4 HOH A 14 514 136 HOH HOH . D 4 HOH A 15 515 131 HOH HOH . D 4 HOH A 16 516 11 HOH HOH . D 4 HOH A 17 517 19 HOH HOH . D 4 HOH A 18 518 30 HOH HOH . D 4 HOH A 19 519 166 HOH HOH . D 4 HOH A 20 520 7 HOH HOH . D 4 HOH A 21 521 63 HOH HOH . D 4 HOH A 22 522 57 HOH HOH . D 4 HOH A 23 523 42 HOH HOH . D 4 HOH A 24 524 26 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 6 HOH HOH . D 4 HOH A 27 527 199 HOH HOH . D 4 HOH A 28 528 21 HOH HOH . D 4 HOH A 29 529 17 HOH HOH . D 4 HOH A 30 530 65 HOH HOH . D 4 HOH A 31 531 22 HOH HOH . D 4 HOH A 32 532 116 HOH HOH . D 4 HOH A 33 533 37 HOH HOH . D 4 HOH A 34 534 105 HOH HOH . D 4 HOH A 35 535 112 HOH HOH . D 4 HOH A 36 536 56 HOH HOH . D 4 HOH A 37 537 163 HOH HOH . D 4 HOH A 38 538 55 HOH HOH . D 4 HOH A 39 539 33 HOH HOH . D 4 HOH A 40 540 178 HOH HOH . D 4 HOH A 41 541 23 HOH HOH . D 4 HOH A 42 542 8 HOH HOH . D 4 HOH A 43 543 125 HOH HOH . D 4 HOH A 44 544 189 HOH HOH . D 4 HOH A 45 545 52 HOH HOH . D 4 HOH A 46 546 120 HOH HOH . D 4 HOH A 47 547 79 HOH HOH . D 4 HOH A 48 548 124 HOH HOH . D 4 HOH A 49 549 24 HOH HOH . D 4 HOH A 50 550 174 HOH HOH . D 4 HOH A 51 551 3 HOH HOH . D 4 HOH A 52 552 27 HOH HOH . D 4 HOH A 53 553 139 HOH HOH . D 4 HOH A 54 554 144 HOH HOH . D 4 HOH A 55 555 1 HOH HOH . D 4 HOH A 56 556 51 HOH HOH . D 4 HOH A 57 557 111 HOH HOH . D 4 HOH A 58 558 88 HOH HOH . D 4 HOH A 59 559 103 HOH HOH . D 4 HOH A 60 560 13 HOH HOH . D 4 HOH A 61 561 198 HOH HOH . D 4 HOH A 62 562 152 HOH HOH . D 4 HOH A 63 563 72 HOH HOH . D 4 HOH A 64 564 75 HOH HOH . D 4 HOH A 65 565 44 HOH HOH . D 4 HOH A 66 566 110 HOH HOH . D 4 HOH A 67 567 4 HOH HOH . D 4 HOH A 68 568 81 HOH HOH . D 4 HOH A 69 569 31 HOH HOH . D 4 HOH A 70 570 64 HOH HOH . D 4 HOH A 71 571 97 HOH HOH . D 4 HOH A 72 572 40 HOH HOH . D 4 HOH A 73 573 168 HOH HOH . D 4 HOH A 74 574 171 HOH HOH . D 4 HOH A 75 575 90 HOH HOH . D 4 HOH A 76 576 184 HOH HOH . D 4 HOH A 77 577 203 HOH HOH . D 4 HOH A 78 578 187 HOH HOH . D 4 HOH A 79 579 151 HOH HOH . D 4 HOH A 80 580 16 HOH HOH . D 4 HOH A 81 581 165 HOH HOH . D 4 HOH A 82 582 96 HOH HOH . D 4 HOH A 83 583 107 HOH HOH . D 4 HOH A 84 584 91 HOH HOH . D 4 HOH A 85 585 109 HOH HOH . D 4 HOH A 86 586 5 HOH HOH . D 4 HOH A 87 587 58 HOH HOH . D 4 HOH A 88 588 39 HOH HOH . D 4 HOH A 89 589 10 HOH HOH . D 4 HOH A 90 590 82 HOH HOH . D 4 HOH A 91 591 95 HOH HOH . D 4 HOH A 92 592 46 HOH HOH . D 4 HOH A 93 593 73 HOH HOH . D 4 HOH A 94 594 9 HOH HOH . D 4 HOH A 95 595 12 HOH HOH . D 4 HOH A 96 596 70 HOH HOH . D 4 HOH A 97 597 2 HOH HOH . D 4 HOH A 98 598 14 HOH HOH . D 4 HOH A 99 599 98 HOH HOH . D 4 HOH A 100 600 130 HOH HOH . D 4 HOH A 101 601 77 HOH HOH . D 4 HOH A 102 602 15 HOH HOH . D 4 HOH A 103 603 85 HOH HOH . D 4 HOH A 104 604 32 HOH HOH . D 4 HOH A 105 605 170 HOH HOH . D 4 HOH A 106 606 87 HOH HOH . D 4 HOH A 107 607 162 HOH HOH . D 4 HOH A 108 608 123 HOH HOH . D 4 HOH A 109 609 89 HOH HOH . D 4 HOH A 110 610 106 HOH HOH . D 4 HOH A 111 611 41 HOH HOH . D 4 HOH A 112 612 54 HOH HOH . D 4 HOH A 113 613 36 HOH HOH . D 4 HOH A 114 614 59 HOH HOH . D 4 HOH A 115 615 45 HOH HOH . D 4 HOH A 116 616 34 HOH HOH . D 4 HOH A 117 617 102 HOH HOH . D 4 HOH A 118 618 146 HOH HOH . D 4 HOH A 119 619 186 HOH HOH . D 4 HOH A 120 620 99 HOH HOH . D 4 HOH A 121 621 94 HOH HOH . D 4 HOH A 122 622 175 HOH HOH . D 4 HOH A 123 623 38 HOH HOH . D 4 HOH A 124 624 164 HOH HOH . D 4 HOH A 125 625 93 HOH HOH . D 4 HOH A 126 626 50 HOH HOH . D 4 HOH A 127 627 35 HOH HOH . D 4 HOH A 128 628 43 HOH HOH . D 4 HOH A 129 629 74 HOH HOH . D 4 HOH A 130 630 47 HOH HOH . D 4 HOH A 131 631 185 HOH HOH . D 4 HOH A 132 632 101 HOH HOH . D 4 HOH A 133 633 169 HOH HOH . D 4 HOH A 134 634 100 HOH HOH . D 4 HOH A 135 635 76 HOH HOH . D 4 HOH A 136 636 18 HOH HOH . D 4 HOH A 137 637 138 HOH HOH . D 4 HOH A 138 638 83 HOH HOH . D 4 HOH A 139 639 119 HOH HOH . D 4 HOH A 140 640 20 HOH HOH . D 4 HOH A 141 641 192 HOH HOH . D 4 HOH A 142 642 86 HOH HOH . D 4 HOH A 143 643 122 HOH HOH . D 4 HOH A 144 644 150 HOH HOH . D 4 HOH A 145 645 108 HOH HOH . D 4 HOH A 146 646 71 HOH HOH . D 4 HOH A 147 647 48 HOH HOH . D 4 HOH A 148 648 49 HOH HOH . D 4 HOH A 149 649 154 HOH HOH . D 4 HOH A 150 650 202 HOH HOH . D 4 HOH A 151 651 177 HOH HOH . D 4 HOH A 152 652 194 HOH HOH . D 4 HOH A 153 653 69 HOH HOH . D 4 HOH A 154 654 126 HOH HOH . D 4 HOH A 155 655 204 HOH HOH . D 4 HOH A 156 656 127 HOH HOH . D 4 HOH A 157 657 28 HOH HOH . D 4 HOH A 158 658 114 HOH HOH . D 4 HOH A 159 659 113 HOH HOH . D 4 HOH A 160 660 153 HOH HOH . D 4 HOH A 161 661 179 HOH HOH . D 4 HOH A 162 662 182 HOH HOH . D 4 HOH A 163 663 161 HOH HOH . D 4 HOH A 164 664 176 HOH HOH . D 4 HOH A 165 665 172 HOH HOH . D 4 HOH A 166 666 53 HOH HOH . D 4 HOH A 167 667 181 HOH HOH . D 4 HOH A 168 668 129 HOH HOH . D 4 HOH A 169 669 160 HOH HOH . D 4 HOH A 170 670 132 HOH HOH . D 4 HOH A 171 671 183 HOH HOH . D 4 HOH A 172 672 104 HOH HOH . D 4 HOH A 173 673 193 HOH HOH . D 4 HOH A 174 674 29 HOH HOH . D 4 HOH A 175 675 158 HOH HOH . D 4 HOH A 176 676 68 HOH HOH . D 4 HOH A 177 677 92 HOH HOH . D 4 HOH A 178 678 66 HOH HOH . D 4 HOH A 179 679 143 HOH HOH . D 4 HOH A 180 680 142 HOH HOH . D 4 HOH A 181 681 201 HOH HOH . D 4 HOH A 182 682 156 HOH HOH . D 4 HOH A 183 683 200 HOH HOH . D 4 HOH A 184 684 157 HOH HOH . D 4 HOH A 185 685 190 HOH HOH . D 4 HOH A 186 686 149 HOH HOH . D 4 HOH A 187 687 191 HOH HOH . D 4 HOH A 188 688 78 HOH HOH . D 4 HOH A 189 689 173 HOH HOH . D 4 HOH A 190 690 61 HOH HOH . D 4 HOH A 191 691 134 HOH HOH . D 4 HOH A 192 692 137 HOH HOH . D 4 HOH A 193 693 117 HOH HOH . D 4 HOH A 194 694 195 HOH HOH . D 4 HOH A 195 695 167 HOH HOH . D 4 HOH A 196 696 115 HOH HOH . D 4 HOH A 197 697 135 HOH HOH . D 4 HOH A 198 698 155 HOH HOH . D 4 HOH A 199 699 197 HOH HOH . D 4 HOH A 200 700 80 HOH HOH . D 4 HOH A 201 701 62 HOH HOH . D 4 HOH A 202 702 133 HOH HOH . D 4 HOH A 203 703 140 HOH HOH . D 4 HOH A 204 704 141 HOH HOH . D 4 HOH A 205 705 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 21.557 -41.199 -22.774 1 32.92 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 21.028 -40.116 -21.841 1 50.06 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 20.938 -41.119 -24.136 1 94.25 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 21.35 -42.56 -22.188 1 64.69 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 23.036 -41.006 -22.911 1 81.31 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 22.065 -39.24 -21.489 1 155.04 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 21.106 -39.79 -24.608 1 59.51 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 21.831 -42.489 -20.917 1 36.01 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 20.625 -40.578 -20.937 1 60.07 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 20.238 -39.555 -22.345 1 60.07 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 19.877 -41.367 -24.068 1 113.1 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 21.435 -41.825 -24.804 1 113.1 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 20.291 -42.825 -22.162 1 77.63 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 21.902 -43.32 -22.744 1 77.63 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 23.48 -41.075 -21.981 1 97.57 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 23.422 -41.735 -23.532 1 97.57 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 23.226 -40.074 -23.314 1 97.57 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 21.722 -38.556 -20.898 1 186.05 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 20.714 -39.709 -25.488 1 71.41 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 22.166 -41.597 -20.749 1 43.21 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #