data_5QE0 # _model_server_result.job_id i-un6KC1ExonhMVHI5hfhA _model_server_result.datetime_utc '2024-11-22 00:13:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qe0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5QE0 # _exptl.entry_id 5QE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QE0 _cell.length_a 89.505 _cell.length_b 89.505 _cell.length_c 106.167 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 43 A ARG 43 1_555 A ND2 ASN 64 A ASN 64 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.281 ? covale ? covale2 A NH2 ARG 43 A ARG 43 1_555 A ND2 ASN 64 A ASN 64 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.281 ? covale ? covale3 A CD ARG 47 A ARG 47 1_555 A OD1 ASP 284 A ASP 284 2_565 ? C ? ? C ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A CD ARG 47 A ARG 47 1_555 A OD1 ASP 284 A ASP 284 2_565 ? D ? ? D ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 360 n n C C2 TRS sing 361 n n C C3 TRS sing 362 n n C N TRS sing 363 n n C1 O1 TRS sing 364 n n C1 H11 TRS sing 365 n n C1 H12 TRS sing 366 n n C2 O2 TRS sing 367 n n C2 H21 TRS sing 368 n n C2 H22 TRS sing 369 n n C3 O3 TRS sing 370 n n C3 H31 TRS sing 371 n n C3 H32 TRS sing 372 n n N HN1 TRS sing 373 n n N HN2 TRS sing 374 n n N HN3 TRS sing 375 n n O1 HO1 TRS sing 376 n n O2 HO2 TRS sing 377 n n O3 HO3 TRS sing 378 n n # _atom_sites.entry_id 5QE0 _atom_sites.fract_transf_matrix[1][1] 0.011173 _atom_sites.fract_transf_matrix[1][2] 0.00645 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JGS A 1 401 1 JGS LIG . C 2 JGS A 1 402 2 JGS LIG . D 3 TRS A 1 403 500 TRS TRS . E 4 HOH A 1 501 76 HOH HOH . E 4 HOH A 2 502 140 HOH HOH . E 4 HOH A 3 503 88 HOH HOH . E 4 HOH A 4 504 159 HOH HOH . E 4 HOH A 5 505 150 HOH HOH . E 4 HOH A 6 506 98 HOH HOH . E 4 HOH A 7 507 53 HOH HOH . E 4 HOH A 8 508 174 HOH HOH . E 4 HOH A 9 509 41 HOH HOH . E 4 HOH A 10 510 31 HOH HOH . E 4 HOH A 11 511 102 HOH HOH . E 4 HOH A 12 512 65 HOH HOH . E 4 HOH A 13 513 155 HOH HOH . E 4 HOH A 14 514 69 HOH HOH . E 4 HOH A 15 515 161 HOH HOH . E 4 HOH A 16 516 93 HOH HOH . E 4 HOH A 17 517 15 HOH HOH . E 4 HOH A 18 518 71 HOH HOH . E 4 HOH A 19 519 137 HOH HOH . E 4 HOH A 20 520 26 HOH HOH . E 4 HOH A 21 521 109 HOH HOH . E 4 HOH A 22 522 83 HOH HOH . E 4 HOH A 23 523 79 HOH HOH . E 4 HOH A 24 524 115 HOH HOH . E 4 HOH A 25 525 54 HOH HOH . E 4 HOH A 26 526 175 HOH HOH . E 4 HOH A 27 527 17 HOH HOH . E 4 HOH A 28 528 67 HOH HOH . E 4 HOH A 29 529 86 HOH HOH . E 4 HOH A 30 530 39 HOH HOH . E 4 HOH A 31 531 6 HOH HOH . E 4 HOH A 32 532 19 HOH HOH . E 4 HOH A 33 533 108 HOH HOH . E 4 HOH A 34 534 126 HOH HOH . E 4 HOH A 35 535 21 HOH HOH . E 4 HOH A 36 536 134 HOH HOH . E 4 HOH A 37 537 152 HOH HOH . E 4 HOH A 38 538 87 HOH HOH . E 4 HOH A 39 539 121 HOH HOH . E 4 HOH A 40 540 7 HOH HOH . E 4 HOH A 41 541 129 HOH HOH . E 4 HOH A 42 542 12 HOH HOH . E 4 HOH A 43 543 100 HOH HOH . E 4 HOH A 44 544 3 HOH HOH . E 4 HOH A 45 545 59 HOH HOH . E 4 HOH A 46 546 8 HOH HOH . E 4 HOH A 47 547 162 HOH HOH . E 4 HOH A 48 548 50 HOH HOH . E 4 HOH A 49 549 35 HOH HOH . E 4 HOH A 50 550 146 HOH HOH . E 4 HOH A 51 551 4 HOH HOH . E 4 HOH A 52 552 64 HOH HOH . E 4 HOH A 53 553 30 HOH HOH . E 4 HOH A 54 554 22 HOH HOH . E 4 HOH A 55 555 10 HOH HOH . E 4 HOH A 56 556 11 HOH HOH . E 4 HOH A 57 557 25 HOH HOH . E 4 HOH A 58 558 29 HOH HOH . E 4 HOH A 59 559 80 HOH HOH . E 4 HOH A 60 560 1 HOH HOH . E 4 HOH A 61 561 40 HOH HOH . E 4 HOH A 62 562 23 HOH HOH . E 4 HOH A 63 563 82 HOH HOH . E 4 HOH A 64 564 55 HOH HOH . E 4 HOH A 65 565 43 HOH HOH . E 4 HOH A 66 566 119 HOH HOH . E 4 HOH A 67 567 153 HOH HOH . E 4 HOH A 68 568 149 HOH HOH . E 4 HOH A 69 569 105 HOH HOH . E 4 HOH A 70 570 73 HOH HOH . E 4 HOH A 71 571 120 HOH HOH . E 4 HOH A 72 572 49 HOH HOH . E 4 HOH A 73 573 5 HOH HOH . E 4 HOH A 74 574 130 HOH HOH . E 4 HOH A 75 575 13 HOH HOH . E 4 HOH A 76 576 52 HOH HOH . E 4 HOH A 77 577 97 HOH HOH . E 4 HOH A 78 578 38 HOH HOH . E 4 HOH A 79 579 63 HOH HOH . E 4 HOH A 80 580 57 HOH HOH . E 4 HOH A 81 581 2 HOH HOH . E 4 HOH A 82 582 113 HOH HOH . E 4 HOH A 83 583 75 HOH HOH . E 4 HOH A 84 584 72 HOH HOH . E 4 HOH A 85 585 9 HOH HOH . E 4 HOH A 86 586 125 HOH HOH . E 4 HOH A 87 587 34 HOH HOH . E 4 HOH A 88 588 14 HOH HOH . E 4 HOH A 89 589 143 HOH HOH . E 4 HOH A 90 590 104 HOH HOH . E 4 HOH A 91 591 20 HOH HOH . E 4 HOH A 92 592 56 HOH HOH . E 4 HOH A 93 593 142 HOH HOH . E 4 HOH A 94 594 95 HOH HOH . E 4 HOH A 95 595 116 HOH HOH . E 4 HOH A 96 596 103 HOH HOH . E 4 HOH A 97 597 16 HOH HOH . E 4 HOH A 98 598 145 HOH HOH . E 4 HOH A 99 599 24 HOH HOH . E 4 HOH A 100 600 37 HOH HOH . E 4 HOH A 101 601 117 HOH HOH . E 4 HOH A 102 602 84 HOH HOH . E 4 HOH A 103 603 92 HOH HOH . E 4 HOH A 104 604 18 HOH HOH . E 4 HOH A 105 605 111 HOH HOH . E 4 HOH A 106 606 158 HOH HOH . E 4 HOH A 107 607 85 HOH HOH . E 4 HOH A 108 608 176 HOH HOH . E 4 HOH A 109 609 91 HOH HOH . E 4 HOH A 110 610 44 HOH HOH . E 4 HOH A 111 611 32 HOH HOH . E 4 HOH A 112 612 133 HOH HOH . E 4 HOH A 113 613 46 HOH HOH . E 4 HOH A 114 614 138 HOH HOH . E 4 HOH A 115 615 33 HOH HOH . E 4 HOH A 116 616 173 HOH HOH . E 4 HOH A 117 617 42 HOH HOH . E 4 HOH A 118 618 157 HOH HOH . E 4 HOH A 119 619 27 HOH HOH . E 4 HOH A 120 620 165 HOH HOH . E 4 HOH A 121 621 151 HOH HOH . E 4 HOH A 122 622 62 HOH HOH . E 4 HOH A 123 623 110 HOH HOH . E 4 HOH A 124 624 89 HOH HOH . E 4 HOH A 125 625 74 HOH HOH . E 4 HOH A 126 626 36 HOH HOH . E 4 HOH A 127 627 47 HOH HOH . E 4 HOH A 128 628 123 HOH HOH . E 4 HOH A 129 629 61 HOH HOH . E 4 HOH A 130 630 169 HOH HOH . E 4 HOH A 131 631 106 HOH HOH . E 4 HOH A 132 632 96 HOH HOH . E 4 HOH A 133 633 127 HOH HOH . E 4 HOH A 134 634 68 HOH HOH . E 4 HOH A 135 635 122 HOH HOH . E 4 HOH A 136 636 48 HOH HOH . E 4 HOH A 137 637 77 HOH HOH . E 4 HOH A 138 638 160 HOH HOH . E 4 HOH A 139 639 164 HOH HOH . E 4 HOH A 140 640 90 HOH HOH . E 4 HOH A 141 641 148 HOH HOH . E 4 HOH A 142 642 58 HOH HOH . E 4 HOH A 143 643 107 HOH HOH . E 4 HOH A 144 644 45 HOH HOH . E 4 HOH A 145 645 141 HOH HOH . E 4 HOH A 146 646 128 HOH HOH . E 4 HOH A 147 647 156 HOH HOH . E 4 HOH A 148 648 114 HOH HOH . E 4 HOH A 149 649 136 HOH HOH . E 4 HOH A 150 650 118 HOH HOH . E 4 HOH A 151 651 167 HOH HOH . E 4 HOH A 152 652 70 HOH HOH . E 4 HOH A 153 653 51 HOH HOH . E 4 HOH A 154 654 172 HOH HOH . E 4 HOH A 155 655 163 HOH HOH . E 4 HOH A 156 656 166 HOH HOH . E 4 HOH A 157 657 66 HOH HOH . E 4 HOH A 158 658 28 HOH HOH . E 4 HOH A 159 659 132 HOH HOH . E 4 HOH A 160 660 170 HOH HOH . E 4 HOH A 161 661 99 HOH HOH . E 4 HOH A 162 662 124 HOH HOH . E 4 HOH A 163 663 131 HOH HOH . E 4 HOH A 164 664 139 HOH HOH . E 4 HOH A 165 665 168 HOH HOH . E 4 HOH A 166 666 135 HOH HOH . E 4 HOH A 167 667 78 HOH HOH . E 4 HOH A 168 668 144 HOH HOH . E 4 HOH A 169 669 94 HOH HOH . E 4 HOH A 170 670 147 HOH HOH . E 4 HOH A 171 671 60 HOH HOH . E 4 HOH A 172 672 154 HOH HOH . E 4 HOH A 173 673 81 HOH HOH . E 4 HOH A 174 674 101 HOH HOH . E 4 HOH A 175 675 171 HOH HOH . E 4 HOH A 176 676 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 -43.654 -2.14 -4.791 1 31.92 ? C TRS 403 A 1 HETATM 2 C C1 TRS . . . D 3 -44.858 -2.076 -3.856 1 49.34 ? C1 TRS 403 A 1 HETATM 3 C C2 TRS . . . D 3 -44.093 -2.608 -6.149 1 76.11 ? C2 TRS 403 A 1 HETATM 4 C C3 TRS . . . D 3 -42.59 -3.038 -4.223 1 100.76 ? C3 TRS 403 A 1 HETATM 5 N N TRS . . . D 3 -43.101 -0.773 -4.929 1 73.12 ? N TRS 403 A 1 HETATM 6 O O1 TRS . . . D 3 -45.071 -0.725 -3.473 1 61.21 ? O1 TRS 403 A 1 HETATM 7 O O2 TRS . . . D 3 -45.107 -1.715 -6.62 1 45.45 ? O2 TRS 403 A 1 HETATM 8 O O3 TRS . . . D 3 -42.304 -2.495 -2.981 1 33.07 ? O3 TRS 403 A 1 HETATM 9 H H11 TRS . . . D 3 -44.664 -2.685 -2.97 1 59.2 ? H11 TRS 403 A 1 HETATM 10 H H12 TRS . . . D 3 -45.741 -2.457 -4.373 1 59.2 ? H12 TRS 403 A 1 HETATM 11 H H21 TRS . . . D 3 -44.49 -3.622 -6.073 1 91.34 ? H21 TRS 403 A 1 HETATM 12 H H22 TRS . . . D 3 -43.239 -2.601 -6.83 1 91.34 ? H22 TRS 403 A 1 HETATM 13 H H31 TRS . . . D 3 -42.945 -4.063 -4.099 1 120.91 ? H31 TRS 403 A 1 HETATM 14 H H32 TRS . . . D 3 -41.686 -3.038 -4.837 1 120.91 ? H32 TRS 403 A 1 HETATM 15 H HN1 TRS . . . D 3 -42.807 -0.425 -4.002 1 87.75 ? HN1 TRS 403 A 1 HETATM 16 H HN2 TRS . . . D 3 -42.285 -0.794 -5.563 1 87.75 ? HN2 TRS 403 A 1 HETATM 17 H HN3 TRS . . . D 3 -43.824 -0.147 -5.319 1 87.75 ? HN3 TRS 403 A 1 HETATM 18 H HO1 TRS . . . D 3 -45.833 -0.674 -2.88 1 73.46 ? HO1 TRS 403 A 1 HETATM 19 H HO2 TRS . . . D 3 -45.405 -1.998 -7.495 1 54.54 ? HO2 TRS 403 A 1 HETATM 20 H HO3 TRS . . . D 3 -42.855 -1.714 -2.836 1 39.69 ? HO3 TRS 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #