data_5QE4 # _model_server_result.job_id BGfYk-DYcapd9UEJmbme8g _model_server_result.datetime_utc '2024-11-08 00:37:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qe4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QE4 # _exptl.entry_id 5QE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 109.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methylpyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QE4 _cell.length_a 90.041 _cell.length_b 90.041 _cell.length_c 106.725 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H7 N3' _chem_comp.formula_weight 109.129 _chem_comp.id JH4 _chem_comp.mon_nstd_flag . _chem_comp.name N-methylpyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C06 JH4 doub 173 n y C05 N04 JH4 sing 174 n y C06 C07 JH4 sing 175 n y N04 C03 JH4 doub 176 n y C07 N08 JH4 doub 177 n y C03 N08 JH4 sing 178 n y C03 N02 JH4 sing 179 n n C01 N02 JH4 sing 180 n n C01 H011 JH4 sing 181 n n C01 H012 JH4 sing 182 n n C01 H013 JH4 sing 183 n n N02 H021 JH4 sing 184 n n C05 H051 JH4 sing 185 n n C06 H061 JH4 sing 186 n n C07 H071 JH4 sing 187 n n # _atom_sites.entry_id 5QE4 _atom_sites.fract_transf_matrix[1][1] 0.011106 _atom_sites.fract_transf_matrix[1][2] 0.006412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JH4 A 1 401 1 JH4 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 38 HOH HOH . D 4 HOH A 2 502 194 HOH HOH . D 4 HOH A 3 503 195 HOH HOH . D 4 HOH A 4 504 230 HOH HOH . D 4 HOH A 5 505 215 HOH HOH . D 4 HOH A 6 506 82 HOH HOH . D 4 HOH A 7 507 218 HOH HOH . D 4 HOH A 8 508 123 HOH HOH . D 4 HOH A 9 509 233 HOH HOH . D 4 HOH A 10 510 186 HOH HOH . D 4 HOH A 11 511 197 HOH HOH . D 4 HOH A 12 512 141 HOH HOH . D 4 HOH A 13 513 68 HOH HOH . D 4 HOH A 14 514 134 HOH HOH . D 4 HOH A 15 515 56 HOH HOH . D 4 HOH A 16 516 156 HOH HOH . D 4 HOH A 17 517 126 HOH HOH . D 4 HOH A 18 518 115 HOH HOH . D 4 HOH A 19 519 140 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 193 HOH HOH . D 4 HOH A 22 522 177 HOH HOH . D 4 HOH A 23 523 111 HOH HOH . D 4 HOH A 24 524 18 HOH HOH . D 4 HOH A 25 525 11 HOH HOH . D 4 HOH A 26 526 7 HOH HOH . D 4 HOH A 27 527 6 HOH HOH . D 4 HOH A 28 528 57 HOH HOH . D 4 HOH A 29 529 62 HOH HOH . D 4 HOH A 30 530 58 HOH HOH . D 4 HOH A 31 531 29 HOH HOH . D 4 HOH A 32 532 42 HOH HOH . D 4 HOH A 33 533 25 HOH HOH . D 4 HOH A 34 534 249 HOH HOH . D 4 HOH A 35 535 175 HOH HOH . D 4 HOH A 36 536 16 HOH HOH . D 4 HOH A 37 537 182 HOH HOH . D 4 HOH A 38 538 44 HOH HOH . D 4 HOH A 39 539 152 HOH HOH . D 4 HOH A 40 540 75 HOH HOH . D 4 HOH A 41 541 36 HOH HOH . D 4 HOH A 42 542 13 HOH HOH . D 4 HOH A 43 543 53 HOH HOH . D 4 HOH A 44 544 23 HOH HOH . D 4 HOH A 45 545 86 HOH HOH . D 4 HOH A 46 546 22 HOH HOH . D 4 HOH A 47 547 3 HOH HOH . D 4 HOH A 48 548 241 HOH HOH . D 4 HOH A 49 549 183 HOH HOH . D 4 HOH A 50 550 41 HOH HOH . D 4 HOH A 51 551 91 HOH HOH . D 4 HOH A 52 552 12 HOH HOH . D 4 HOH A 53 553 98 HOH HOH . D 4 HOH A 54 554 14 HOH HOH . D 4 HOH A 55 555 30 HOH HOH . D 4 HOH A 56 556 129 HOH HOH . D 4 HOH A 57 557 1 HOH HOH . D 4 HOH A 58 558 118 HOH HOH . D 4 HOH A 59 559 122 HOH HOH . D 4 HOH A 60 560 172 HOH HOH . D 4 HOH A 61 561 120 HOH HOH . D 4 HOH A 62 562 8 HOH HOH . D 4 HOH A 63 563 71 HOH HOH . D 4 HOH A 64 564 94 HOH HOH . D 4 HOH A 65 565 35 HOH HOH . D 4 HOH A 66 566 76 HOH HOH . D 4 HOH A 67 567 227 HOH HOH . D 4 HOH A 68 568 133 HOH HOH . D 4 HOH A 69 569 66 HOH HOH . D 4 HOH A 70 570 24 HOH HOH . D 4 HOH A 71 571 137 HOH HOH . D 4 HOH A 72 572 106 HOH HOH . D 4 HOH A 73 573 5 HOH HOH . D 4 HOH A 74 574 114 HOH HOH . D 4 HOH A 75 575 80 HOH HOH . D 4 HOH A 76 576 4 HOH HOH . D 4 HOH A 77 577 26 HOH HOH . D 4 HOH A 78 578 209 HOH HOH . D 4 HOH A 79 579 81 HOH HOH . D 4 HOH A 80 580 67 HOH HOH . D 4 HOH A 81 581 83 HOH HOH . D 4 HOH A 82 582 21 HOH HOH . D 4 HOH A 83 583 216 HOH HOH . D 4 HOH A 84 584 40 HOH HOH . D 4 HOH A 85 585 139 HOH HOH . D 4 HOH A 86 586 243 HOH HOH . D 4 HOH A 87 587 32 HOH HOH . D 4 HOH A 88 588 181 HOH HOH . D 4 HOH A 89 589 217 HOH HOH . D 4 HOH A 90 590 17 HOH HOH . D 4 HOH A 91 591 39 HOH HOH . D 4 HOH A 92 592 31 HOH HOH . D 4 HOH A 93 593 240 HOH HOH . D 4 HOH A 94 594 10 HOH HOH . D 4 HOH A 95 595 202 HOH HOH . D 4 HOH A 96 596 97 HOH HOH . D 4 HOH A 97 597 15 HOH HOH . D 4 HOH A 98 598 166 HOH HOH . D 4 HOH A 99 599 43 HOH HOH . D 4 HOH A 100 600 52 HOH HOH . D 4 HOH A 101 601 144 HOH HOH . D 4 HOH A 102 602 184 HOH HOH . D 4 HOH A 103 603 60 HOH HOH . D 4 HOH A 104 604 145 HOH HOH . D 4 HOH A 105 605 127 HOH HOH . D 4 HOH A 106 606 9 HOH HOH . D 4 HOH A 107 607 103 HOH HOH . D 4 HOH A 108 608 191 HOH HOH . D 4 HOH A 109 609 78 HOH HOH . D 4 HOH A 110 610 95 HOH HOH . D 4 HOH A 111 611 34 HOH HOH . D 4 HOH A 112 612 250 HOH HOH . D 4 HOH A 113 613 210 HOH HOH . D 4 HOH A 114 614 185 HOH HOH . D 4 HOH A 115 615 2 HOH HOH . D 4 HOH A 116 616 107 HOH HOH . D 4 HOH A 117 617 89 HOH HOH . D 4 HOH A 118 618 51 HOH HOH . D 4 HOH A 119 619 55 HOH HOH . D 4 HOH A 120 620 245 HOH HOH . D 4 HOH A 121 621 212 HOH HOH . D 4 HOH A 122 622 143 HOH HOH . D 4 HOH A 123 623 109 HOH HOH . D 4 HOH A 124 624 74 HOH HOH . D 4 HOH A 125 625 231 HOH HOH . D 4 HOH A 126 626 198 HOH HOH . D 4 HOH A 127 627 59 HOH HOH . D 4 HOH A 128 628 33 HOH HOH . D 4 HOH A 129 629 47 HOH HOH . D 4 HOH A 130 630 92 HOH HOH . D 4 HOH A 131 631 99 HOH HOH . D 4 HOH A 132 632 112 HOH HOH . D 4 HOH A 133 633 88 HOH HOH . D 4 HOH A 134 634 104 HOH HOH . D 4 HOH A 135 635 131 HOH HOH . D 4 HOH A 136 636 79 HOH HOH . D 4 HOH A 137 637 168 HOH HOH . D 4 HOH A 138 638 19 HOH HOH . D 4 HOH A 139 639 90 HOH HOH . D 4 HOH A 140 640 45 HOH HOH . D 4 HOH A 141 641 105 HOH HOH . D 4 HOH A 142 642 179 HOH HOH . D 4 HOH A 143 643 108 HOH HOH . D 4 HOH A 144 644 224 HOH HOH . D 4 HOH A 145 645 242 HOH HOH . D 4 HOH A 146 646 48 HOH HOH . D 4 HOH A 147 647 116 HOH HOH . D 4 HOH A 148 648 64 HOH HOH . D 4 HOH A 149 649 77 HOH HOH . D 4 HOH A 150 650 50 HOH HOH . D 4 HOH A 151 651 142 HOH HOH . D 4 HOH A 152 652 223 HOH HOH . D 4 HOH A 153 653 178 HOH HOH . D 4 HOH A 154 654 110 HOH HOH . D 4 HOH A 155 655 96 HOH HOH . D 4 HOH A 156 656 237 HOH HOH . D 4 HOH A 157 657 220 HOH HOH . D 4 HOH A 158 658 163 HOH HOH . D 4 HOH A 159 659 232 HOH HOH . D 4 HOH A 160 660 46 HOH HOH . D 4 HOH A 161 661 146 HOH HOH . D 4 HOH A 162 662 37 HOH HOH . D 4 HOH A 163 663 244 HOH HOH . D 4 HOH A 164 664 136 HOH HOH . D 4 HOH A 165 665 170 HOH HOH . D 4 HOH A 166 666 85 HOH HOH . D 4 HOH A 167 667 70 HOH HOH . D 4 HOH A 168 668 27 HOH HOH . D 4 HOH A 169 669 121 HOH HOH . D 4 HOH A 170 670 73 HOH HOH . D 4 HOH A 171 671 49 HOH HOH . D 4 HOH A 172 672 61 HOH HOH . D 4 HOH A 173 673 65 HOH HOH . D 4 HOH A 174 674 225 HOH HOH . D 4 HOH A 175 675 93 HOH HOH . D 4 HOH A 176 676 173 HOH HOH . D 4 HOH A 177 677 229 HOH HOH . D 4 HOH A 178 678 124 HOH HOH . D 4 HOH A 179 679 150 HOH HOH . D 4 HOH A 180 680 125 HOH HOH . D 4 HOH A 181 681 236 HOH HOH . D 4 HOH A 182 682 247 HOH HOH . D 4 HOH A 183 683 154 HOH HOH . D 4 HOH A 184 684 174 HOH HOH . D 4 HOH A 185 685 155 HOH HOH . D 4 HOH A 186 686 148 HOH HOH . D 4 HOH A 187 687 239 HOH HOH . D 4 HOH A 188 688 101 HOH HOH . D 4 HOH A 189 689 238 HOH HOH . D 4 HOH A 190 690 180 HOH HOH . D 4 HOH A 191 691 192 HOH HOH . D 4 HOH A 192 692 204 HOH HOH . D 4 HOH A 193 693 196 HOH HOH . D 4 HOH A 194 694 252 HOH HOH . D 4 HOH A 195 695 214 HOH HOH . D 4 HOH A 196 696 54 HOH HOH . D 4 HOH A 197 697 169 HOH HOH . D 4 HOH A 198 698 151 HOH HOH . D 4 HOH A 199 699 248 HOH HOH . D 4 HOH A 200 700 235 HOH HOH . D 4 HOH A 201 701 28 HOH HOH . D 4 HOH A 202 702 147 HOH HOH . D 4 HOH A 203 703 199 HOH HOH . D 4 HOH A 204 704 200 HOH HOH . D 4 HOH A 205 705 228 HOH HOH . D 4 HOH A 206 706 251 HOH HOH . D 4 HOH A 207 707 100 HOH HOH . D 4 HOH A 208 708 117 HOH HOH . D 4 HOH A 209 709 69 HOH HOH . D 4 HOH A 210 710 234 HOH HOH . D 4 HOH A 211 711 159 HOH HOH . D 4 HOH A 212 712 160 HOH HOH . D 4 HOH A 213 713 72 HOH HOH . D 4 HOH A 214 714 113 HOH HOH . D 4 HOH A 215 715 211 HOH HOH . D 4 HOH A 216 716 219 HOH HOH . D 4 HOH A 217 717 246 HOH HOH . D 4 HOH A 218 718 201 HOH HOH . D 4 HOH A 219 719 213 HOH HOH . D 4 HOH A 220 720 253 HOH HOH . D 4 HOH A 221 721 102 HOH HOH . D 4 HOH A 222 722 63 HOH HOH . D 4 HOH A 223 723 84 HOH HOH . D 4 HOH A 224 724 207 HOH HOH . D 4 HOH A 225 725 164 HOH HOH . D 4 HOH A 226 726 153 HOH HOH . D 4 HOH A 227 727 187 HOH HOH . D 4 HOH A 228 728 222 HOH HOH . D 4 HOH A 229 729 119 HOH HOH . D 4 HOH A 230 730 176 HOH HOH . D 4 HOH A 231 731 128 HOH HOH . D 4 HOH A 232 732 205 HOH HOH . D 4 HOH A 233 733 165 HOH HOH . D 4 HOH A 234 734 189 HOH HOH . D 4 HOH A 235 735 171 HOH HOH . D 4 HOH A 236 736 132 HOH HOH . D 4 HOH A 237 737 167 HOH HOH . D 4 HOH A 238 738 138 HOH HOH . D 4 HOH A 239 739 87 HOH HOH . D 4 HOH A 240 740 135 HOH HOH . D 4 HOH A 241 741 221 HOH HOH . D 4 HOH A 242 742 149 HOH HOH . D 4 HOH A 243 743 157 HOH HOH . D 4 HOH A 244 744 203 HOH HOH . D 4 HOH A 245 745 190 HOH HOH . D 4 HOH A 246 746 208 HOH HOH . D 4 HOH A 247 747 162 HOH HOH . D 4 HOH A 248 748 206 HOH HOH . D 4 HOH A 249 749 130 HOH HOH . D 4 HOH A 250 750 158 HOH HOH . D 4 HOH A 251 751 188 HOH HOH . D 4 HOH A 252 752 226 HOH HOH . D 4 HOH A 253 753 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 JH4 . C . B 2 -52.099 14.538 -14.955 0.21 48.56 ? C01 JH4 401 A 1 HETATM 2 C C01 JH4 . D . B 2 -52.099 14.538 -14.955 0.21 48.56 ? C01 JH4 401 A 1 HETATM 3 N N02 JH4 . C . B 2 -50.935 15.213 -14.947 0.21 25.52 ? N02 JH4 401 A 1 HETATM 4 N N02 JH4 . D . B 2 -50.935 15.213 -14.947 0.21 25.52 ? N02 JH4 401 A 1 HETATM 5 C C03 JH4 . C . B 2 -50.228 15.352 -16.08 0.21 52.28 ? C03 JH4 401 A 1 HETATM 6 C C03 JH4 . D . B 2 -50.228 15.352 -16.08 0.21 52.28 ? C03 JH4 401 A 1 HETATM 7 N N04 JH4 . C . B 2 -50.844 14.952 -17.262 0.21 44.55 ? N04 JH4 401 A 1 HETATM 8 N N04 JH4 . D . B 2 -50.844 14.952 -17.262 0.21 44.55 ? N04 JH4 401 A 1 HETATM 9 C C05 JH4 . C . B 2 -50.126 15.094 -18.348 0.21 45.03 ? C05 JH4 401 A 1 HETATM 10 C C05 JH4 . D . B 2 -50.126 15.094 -18.348 0.21 45.03 ? C05 JH4 401 A 1 HETATM 11 C C06 JH4 . C . B 2 -48.875 15.586 -18.327 0.21 32.44 ? C06 JH4 401 A 1 HETATM 12 C C06 JH4 . D . B 2 -48.875 15.586 -18.327 0.21 32.44 ? C06 JH4 401 A 1 HETATM 13 C C07 JH4 . C . B 2 -48.36 15.94 -17.118 0.21 42.35 ? C07 JH4 401 A 1 HETATM 14 C C07 JH4 . D . B 2 -48.36 15.94 -17.118 0.21 42.35 ? C07 JH4 401 A 1 HETATM 15 N N08 JH4 . C . B 2 -49.018 15.825 -15.969 0.21 47.17 ? N08 JH4 401 A 1 HETATM 16 N N08 JH4 . D . B 2 -49.018 15.825 -15.969 0.21 47.17 ? N08 JH4 401 A 1 HETATM 17 H H011 JH4 . C . B 2 -52.022 13.672 -14.257 0.21 58.27 ? H011 JH4 401 A 1 HETATM 18 H H011 JH4 . D . B 2 -52.022 13.672 -14.257 0.21 58.27 ? H011 JH4 401 A 1 HETATM 19 H H012 JH4 . C . B 2 -52.379 14.142 -15.942 0.21 58.27 ? H012 JH4 401 A 1 HETATM 20 H H012 JH4 . D . B 2 -52.379 14.142 -15.942 0.21 58.27 ? H012 JH4 401 A 1 HETATM 21 H H013 JH4 . C . B 2 -52.974 15.143 -14.638 0.21 58.27 ? H013 JH4 401 A 1 HETATM 22 H H013 JH4 . D . B 2 -52.974 15.143 -14.638 0.21 58.27 ? H013 JH4 401 A 1 HETATM 23 H H021 JH4 . C . B 2 -50.594 15.617 -14.077 0.21 30.62 ? H021 JH4 401 A 1 HETATM 24 H H021 JH4 . D . B 2 -50.594 15.617 -14.077 0.21 30.62 ? H021 JH4 401 A 1 HETATM 25 H H051 JH4 . C . B 2 -50.519 14.814 -19.337 0.21 54.04 ? H051 JH4 401 A 1 HETATM 26 H H051 JH4 . D . B 2 -50.519 14.814 -19.337 0.21 54.04 ? H051 JH4 401 A 1 HETATM 27 H H061 JH4 . C . B 2 -48.278 15.707 -19.233 0.21 38.93 ? H061 JH4 401 A 1 HETATM 28 H H061 JH4 . D . B 2 -48.278 15.707 -19.233 0.21 38.93 ? H061 JH4 401 A 1 HETATM 29 H H071 JH4 . C . B 2 -47.345 16.336 -17.147 0.21 50.81 ? H071 JH4 401 A 1 HETATM 30 H H071 JH4 . D . B 2 -47.345 16.336 -17.147 0.21 50.81 ? H071 JH4 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #