data_5QE5 # _model_server_result.job_id pu2snzylaBHlwPL8d0ZDlw _model_server_result.datetime_utc '2024-11-05 11:02:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qe5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5QE5 # _exptl.entry_id 5QE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QE5 _cell.length_a 89.869 _cell.length_b 89.869 _cell.length_c 106.726 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 360 n n C C2 TRS sing 361 n n C C3 TRS sing 362 n n C N TRS sing 363 n n C1 O1 TRS sing 364 n n C1 H11 TRS sing 365 n n C1 H12 TRS sing 366 n n C2 O2 TRS sing 367 n n C2 H21 TRS sing 368 n n C2 H22 TRS sing 369 n n C3 O3 TRS sing 370 n n C3 H31 TRS sing 371 n n C3 H32 TRS sing 372 n n N HN1 TRS sing 373 n n N HN2 TRS sing 374 n n N HN3 TRS sing 375 n n O1 HO1 TRS sing 376 n n O2 HO2 TRS sing 377 n n O3 HO3 TRS sing 378 n n # _atom_sites.entry_id 5QE5 _atom_sites.fract_transf_matrix[1][1] 0.011127 _atom_sites.fract_transf_matrix[1][2] 0.006424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JH7 A 1 401 1 JH7 LIG . C 2 JH7 A 1 402 2 JH7 LIG . D 3 TRS A 1 403 500 TRS TRS . E 4 HOH A 1 501 141 HOH HOH . E 4 HOH A 2 502 188 HOH HOH . E 4 HOH A 3 503 123 HOH HOH . E 4 HOH A 4 504 186 HOH HOH . E 4 HOH A 5 505 168 HOH HOH . E 4 HOH A 6 506 232 HOH HOH . E 4 HOH A 7 507 193 HOH HOH . E 4 HOH A 8 508 225 HOH HOH . E 4 HOH A 9 509 156 HOH HOH . E 4 HOH A 10 510 233 HOH HOH . E 4 HOH A 11 511 229 HOH HOH . E 4 HOH A 12 512 20 HOH HOH . E 4 HOH A 13 513 136 HOH HOH . E 4 HOH A 14 514 142 HOH HOH . E 4 HOH A 15 515 147 HOH HOH . E 4 HOH A 16 516 3 HOH HOH . E 4 HOH A 17 517 124 HOH HOH . E 4 HOH A 18 518 187 HOH HOH . E 4 HOH A 19 519 18 HOH HOH . E 4 HOH A 20 520 208 HOH HOH . E 4 HOH A 21 521 265 HOH HOH . E 4 HOH A 22 522 95 HOH HOH . E 4 HOH A 23 523 239 HOH HOH . E 4 HOH A 24 524 238 HOH HOH . E 4 HOH A 25 525 94 HOH HOH . E 4 HOH A 26 526 6 HOH HOH . E 4 HOH A 27 527 153 HOH HOH . E 4 HOH A 28 528 84 HOH HOH . E 4 HOH A 29 529 46 HOH HOH . E 4 HOH A 30 530 129 HOH HOH . E 4 HOH A 31 531 55 HOH HOH . E 4 HOH A 32 532 7 HOH HOH . E 4 HOH A 33 533 4 HOH HOH . E 4 HOH A 34 534 205 HOH HOH . E 4 HOH A 35 535 101 HOH HOH . E 4 HOH A 36 536 198 HOH HOH . E 4 HOH A 37 537 66 HOH HOH . E 4 HOH A 38 538 120 HOH HOH . E 4 HOH A 39 539 79 HOH HOH . E 4 HOH A 40 540 36 HOH HOH . E 4 HOH A 41 541 111 HOH HOH . E 4 HOH A 42 542 14 HOH HOH . E 4 HOH A 43 543 25 HOH HOH . E 4 HOH A 44 544 96 HOH HOH . E 4 HOH A 45 545 221 HOH HOH . E 4 HOH A 46 546 88 HOH HOH . E 4 HOH A 47 547 170 HOH HOH . E 4 HOH A 48 548 42 HOH HOH . E 4 HOH A 49 549 11 HOH HOH . E 4 HOH A 50 550 98 HOH HOH . E 4 HOH A 51 551 90 HOH HOH . E 4 HOH A 52 552 256 HOH HOH . E 4 HOH A 53 553 16 HOH HOH . E 4 HOH A 54 554 195 HOH HOH . E 4 HOH A 55 555 140 HOH HOH . E 4 HOH A 56 556 32 HOH HOH . E 4 HOH A 57 557 180 HOH HOH . E 4 HOH A 58 558 56 HOH HOH . E 4 HOH A 59 559 24 HOH HOH . E 4 HOH A 60 560 69 HOH HOH . E 4 HOH A 61 561 54 HOH HOH . E 4 HOH A 62 562 178 HOH HOH . E 4 HOH A 63 563 60 HOH HOH . E 4 HOH A 64 564 23 HOH HOH . E 4 HOH A 65 565 223 HOH HOH . E 4 HOH A 66 566 144 HOH HOH . E 4 HOH A 67 567 41 HOH HOH . E 4 HOH A 68 568 121 HOH HOH . E 4 HOH A 69 569 73 HOH HOH . E 4 HOH A 70 570 13 HOH HOH . E 4 HOH A 71 571 138 HOH HOH . E 4 HOH A 72 572 105 HOH HOH . E 4 HOH A 73 573 5 HOH HOH . E 4 HOH A 74 574 132 HOH HOH . E 4 HOH A 75 575 31 HOH HOH . E 4 HOH A 76 576 40 HOH HOH . E 4 HOH A 77 577 217 HOH HOH . E 4 HOH A 78 578 30 HOH HOH . E 4 HOH A 79 579 203 HOH HOH . E 4 HOH A 80 580 122 HOH HOH . E 4 HOH A 81 581 252 HOH HOH . E 4 HOH A 82 582 108 HOH HOH . E 4 HOH A 83 583 29 HOH HOH . E 4 HOH A 84 584 51 HOH HOH . E 4 HOH A 85 585 49 HOH HOH . E 4 HOH A 86 586 100 HOH HOH . E 4 HOH A 87 587 1 HOH HOH . E 4 HOH A 88 588 74 HOH HOH . E 4 HOH A 89 589 45 HOH HOH . E 4 HOH A 90 590 12 HOH HOH . E 4 HOH A 91 591 133 HOH HOH . E 4 HOH A 92 592 177 HOH HOH . E 4 HOH A 93 593 255 HOH HOH . E 4 HOH A 94 594 43 HOH HOH . E 4 HOH A 95 595 22 HOH HOH . E 4 HOH A 96 596 8 HOH HOH . E 4 HOH A 97 597 190 HOH HOH . E 4 HOH A 98 598 226 HOH HOH . E 4 HOH A 99 599 254 HOH HOH . E 4 HOH A 100 600 2 HOH HOH . E 4 HOH A 101 601 135 HOH HOH . E 4 HOH A 102 602 185 HOH HOH . E 4 HOH A 103 603 81 HOH HOH . E 4 HOH A 104 604 65 HOH HOH . E 4 HOH A 105 605 235 HOH HOH . E 4 HOH A 106 606 26 HOH HOH . E 4 HOH A 107 607 115 HOH HOH . E 4 HOH A 108 608 118 HOH HOH . E 4 HOH A 109 609 171 HOH HOH . E 4 HOH A 110 610 77 HOH HOH . E 4 HOH A 111 611 50 HOH HOH . E 4 HOH A 112 612 15 HOH HOH . E 4 HOH A 113 613 10 HOH HOH . E 4 HOH A 114 614 234 HOH HOH . E 4 HOH A 115 615 200 HOH HOH . E 4 HOH A 116 616 35 HOH HOH . E 4 HOH A 117 617 104 HOH HOH . E 4 HOH A 118 618 9 HOH HOH . E 4 HOH A 119 619 76 HOH HOH . E 4 HOH A 120 620 39 HOH HOH . E 4 HOH A 121 621 184 HOH HOH . E 4 HOH A 122 622 103 HOH HOH . E 4 HOH A 123 623 91 HOH HOH . E 4 HOH A 124 624 72 HOH HOH . E 4 HOH A 125 625 78 HOH HOH . E 4 HOH A 126 626 112 HOH HOH . E 4 HOH A 127 627 58 HOH HOH . E 4 HOH A 128 628 264 HOH HOH . E 4 HOH A 129 629 191 HOH HOH . E 4 HOH A 130 630 207 HOH HOH . E 4 HOH A 131 631 215 HOH HOH . E 4 HOH A 132 632 17 HOH HOH . E 4 HOH A 133 633 261 HOH HOH . E 4 HOH A 134 634 125 HOH HOH . E 4 HOH A 135 635 146 HOH HOH . E 4 HOH A 136 636 192 HOH HOH . E 4 HOH A 137 637 64 HOH HOH . E 4 HOH A 138 638 53 HOH HOH . E 4 HOH A 139 639 93 HOH HOH . E 4 HOH A 140 640 21 HOH HOH . E 4 HOH A 141 641 33 HOH HOH . E 4 HOH A 142 642 34 HOH HOH . E 4 HOH A 143 643 220 HOH HOH . E 4 HOH A 144 644 38 HOH HOH . E 4 HOH A 145 645 57 HOH HOH . E 4 HOH A 146 646 130 HOH HOH . E 4 HOH A 147 647 86 HOH HOH . E 4 HOH A 148 648 167 HOH HOH . E 4 HOH A 149 649 102 HOH HOH . E 4 HOH A 150 650 143 HOH HOH . E 4 HOH A 151 651 85 HOH HOH . E 4 HOH A 152 652 196 HOH HOH . E 4 HOH A 153 653 19 HOH HOH . E 4 HOH A 154 654 107 HOH HOH . E 4 HOH A 155 655 127 HOH HOH . E 4 HOH A 156 656 201 HOH HOH . E 4 HOH A 157 657 87 HOH HOH . E 4 HOH A 158 658 145 HOH HOH . E 4 HOH A 159 659 116 HOH HOH . E 4 HOH A 160 660 109 HOH HOH . E 4 HOH A 161 661 194 HOH HOH . E 4 HOH A 162 662 158 HOH HOH . E 4 HOH A 163 663 44 HOH HOH . E 4 HOH A 164 664 204 HOH HOH . E 4 HOH A 165 665 237 HOH HOH . E 4 HOH A 166 666 106 HOH HOH . E 4 HOH A 167 667 75 HOH HOH . E 4 HOH A 168 668 37 HOH HOH . E 4 HOH A 169 669 148 HOH HOH . E 4 HOH A 170 670 260 HOH HOH . E 4 HOH A 171 671 247 HOH HOH . E 4 HOH A 172 672 47 HOH HOH . E 4 HOH A 173 673 240 HOH HOH . E 4 HOH A 174 674 80 HOH HOH . E 4 HOH A 175 675 92 HOH HOH . E 4 HOH A 176 676 224 HOH HOH . E 4 HOH A 177 677 48 HOH HOH . E 4 HOH A 178 678 154 HOH HOH . E 4 HOH A 179 679 63 HOH HOH . E 4 HOH A 180 680 68 HOH HOH . E 4 HOH A 181 681 126 HOH HOH . E 4 HOH A 182 682 179 HOH HOH . E 4 HOH A 183 683 110 HOH HOH . E 4 HOH A 184 684 172 HOH HOH . E 4 HOH A 185 685 150 HOH HOH . E 4 HOH A 186 686 89 HOH HOH . E 4 HOH A 187 687 27 HOH HOH . E 4 HOH A 188 688 210 HOH HOH . E 4 HOH A 189 689 243 HOH HOH . E 4 HOH A 190 690 189 HOH HOH . E 4 HOH A 191 691 263 HOH HOH . E 4 HOH A 192 692 119 HOH HOH . E 4 HOH A 193 693 71 HOH HOH . E 4 HOH A 194 694 182 HOH HOH . E 4 HOH A 195 695 169 HOH HOH . E 4 HOH A 196 696 152 HOH HOH . E 4 HOH A 197 697 213 HOH HOH . E 4 HOH A 198 698 82 HOH HOH . E 4 HOH A 199 699 59 HOH HOH . E 4 HOH A 200 700 162 HOH HOH . E 4 HOH A 201 701 155 HOH HOH . E 4 HOH A 202 702 227 HOH HOH . E 4 HOH A 203 703 211 HOH HOH . E 4 HOH A 204 704 149 HOH HOH . E 4 HOH A 205 705 52 HOH HOH . E 4 HOH A 206 706 173 HOH HOH . E 4 HOH A 207 707 202 HOH HOH . E 4 HOH A 208 708 151 HOH HOH . E 4 HOH A 209 709 231 HOH HOH . E 4 HOH A 210 710 228 HOH HOH . E 4 HOH A 211 711 70 HOH HOH . E 4 HOH A 212 712 266 HOH HOH . E 4 HOH A 213 713 253 HOH HOH . E 4 HOH A 214 714 117 HOH HOH . E 4 HOH A 215 715 28 HOH HOH . E 4 HOH A 216 716 97 HOH HOH . E 4 HOH A 217 717 242 HOH HOH . E 4 HOH A 218 718 183 HOH HOH . E 4 HOH A 219 719 113 HOH HOH . E 4 HOH A 220 720 241 HOH HOH . E 4 HOH A 221 721 175 HOH HOH . E 4 HOH A 222 722 248 HOH HOH . E 4 HOH A 223 723 230 HOH HOH . E 4 HOH A 224 724 206 HOH HOH . E 4 HOH A 225 725 209 HOH HOH . E 4 HOH A 226 726 67 HOH HOH . E 4 HOH A 227 727 258 HOH HOH . E 4 HOH A 228 728 267 HOH HOH . E 4 HOH A 229 729 244 HOH HOH . E 4 HOH A 230 730 249 HOH HOH . E 4 HOH A 231 731 99 HOH HOH . E 4 HOH A 232 732 216 HOH HOH . E 4 HOH A 233 733 128 HOH HOH . E 4 HOH A 234 734 219 HOH HOH . E 4 HOH A 235 735 181 HOH HOH . E 4 HOH A 236 736 137 HOH HOH . E 4 HOH A 237 737 176 HOH HOH . E 4 HOH A 238 738 222 HOH HOH . E 4 HOH A 239 739 245 HOH HOH . E 4 HOH A 240 740 174 HOH HOH . E 4 HOH A 241 741 262 HOH HOH . E 4 HOH A 242 742 83 HOH HOH . E 4 HOH A 243 743 259 HOH HOH . E 4 HOH A 244 744 61 HOH HOH . E 4 HOH A 245 745 246 HOH HOH . E 4 HOH A 246 746 131 HOH HOH . E 4 HOH A 247 747 134 HOH HOH . E 4 HOH A 248 748 139 HOH HOH . E 4 HOH A 249 749 157 HOH HOH . E 4 HOH A 250 750 197 HOH HOH . E 4 HOH A 251 751 251 HOH HOH . E 4 HOH A 252 752 257 HOH HOH . E 4 HOH A 253 753 212 HOH HOH . E 4 HOH A 254 754 236 HOH HOH . E 4 HOH A 255 755 114 HOH HOH . E 4 HOH A 256 756 165 HOH HOH . E 4 HOH A 257 757 160 HOH HOH . E 4 HOH A 258 758 163 HOH HOH . E 4 HOH A 259 759 62 HOH HOH . E 4 HOH A 260 760 159 HOH HOH . E 4 HOH A 261 761 250 HOH HOH . E 4 HOH A 262 762 214 HOH HOH . E 4 HOH A 263 763 218 HOH HOH . E 4 HOH A 264 764 164 HOH HOH . E 4 HOH A 265 765 161 HOH HOH . E 4 HOH A 266 766 199 HOH HOH . E 4 HOH A 267 767 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 -43.702 -2.038 -4.905 1 21.75 ? C TRS 403 A 1 HETATM 2 C C1 TRS . . . D 3 -44.899 -1.95 -3.961 1 44.12 ? C1 TRS 403 A 1 HETATM 3 C C2 TRS . . . D 3 -44.07 -2.53 -6.27 1 103.43 ? C2 TRS 403 A 1 HETATM 4 C C3 TRS . . . D 3 -42.625 -2.899 -4.321 1 86.8 ? C3 TRS 403 A 1 HETATM 5 N N TRS . . . D 3 -43.131 -0.658 -5.018 1 69.88 ? N TRS 403 A 1 HETATM 6 O O1 TRS . . . D 3 -45.125 -0.609 -3.608 1 116.25 ? O1 TRS 403 A 1 HETATM 7 O O2 TRS . . . D 3 -45.118 -1.694 -6.723 1 49.25 ? O2 TRS 403 A 1 HETATM 8 O O3 TRS . . . D 3 -42.409 -2.367 -3.092 1 32.65 ? O3 TRS 403 A 1 HETATM 9 H H11 TRS . . . D 3 -44.695 -2.532 -3.06 1 52.94 ? H11 TRS 403 A 1 HETATM 10 H H12 TRS . . . D 3 -45.785 -2.348 -4.459 1 52.94 ? H12 TRS 403 A 1 HETATM 11 H H21 TRS . . . D 3 -44.397 -3.57 -6.206 1 124.12 ? H21 TRS 403 A 1 HETATM 12 H H22 TRS . . . D 3 -43.201 -2.462 -6.928 1 124.12 ? H22 TRS 403 A 1 HETATM 13 H H31 TRS . . . D 3 -42.941 -3.939 -4.217 1 104.16 ? H31 TRS 403 A 1 HETATM 14 H H32 TRS . . . D 3 -41.702 -2.855 -4.904 1 104.16 ? H32 TRS 403 A 1 HETATM 15 H HN1 TRS . . . D 3 -42.857 -0.321 -4.081 1 83.85 ? HN1 TRS 403 A 1 HETATM 16 H HN2 TRS . . . D 3 -42.301 -0.678 -5.633 1 83.85 ? HN2 TRS 403 A 1 HETATM 17 H HN3 TRS . . . D 3 -43.841 -0.023 -5.419 1 83.85 ? HN3 TRS 403 A 1 HETATM 18 H HO1 TRS . . . D 3 -45.883 -0.556 -3.011 1 139.5 ? HO1 TRS 403 A 1 HETATM 19 H HO2 TRS . . . D 3 -45.393 -1.973 -7.607 1 59.1 ? HO2 TRS 403 A 1 HETATM 20 H HO3 TRS . . . D 3 -42.997 -1.611 -2.96 1 39.18 ? HO3 TRS 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #