data_5QEE # _model_server_result.job_id T3GdlvEhfCtKe-mNap19KQ _model_server_result.datetime_utc '2024-11-21 23:27:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QEE # _exptl.entry_id 5QEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-cyclopentyl-N-(5-methyl-1,3-thiazol-2-yl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QEE _cell.length_a 89.242 _cell.length_b 89.242 _cell.length_c 105.791 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H18 N2 O S' _chem_comp.formula_weight 238.349 _chem_comp.id JJ4 _chem_comp.mon_nstd_flag . _chem_comp.name 3-cyclopentyl-N-(5-methyl-1,3-thiazol-2-yl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 JJ4 sing 173 n n C15 C14 JJ4 sing 174 n n C16 C12 JJ4 sing 175 n n C11 C10 JJ4 sing 176 n n C11 C12 JJ4 sing 177 n n C14 C13 JJ4 sing 178 n n C10 C08 JJ4 sing 179 n n C12 C13 JJ4 sing 180 n n S06 C05 JJ4 sing 181 n y S06 C02 JJ4 sing 182 n y C08 N07 JJ4 sing 183 n n C08 O09 JJ4 doub 184 n n N07 C05 JJ4 sing 185 n n C05 N04 JJ4 doub 186 n y C01 C02 JJ4 sing 187 n n C02 C03 JJ4 doub 188 n y N04 C03 JJ4 sing 189 n y C10 H102 JJ4 sing 190 n n C10 H101 JJ4 sing 191 n n C13 H131 JJ4 sing 192 n n C13 H132 JJ4 sing 193 n n C15 H152 JJ4 sing 194 n n C15 H151 JJ4 sing 195 n n C01 H011 JJ4 sing 196 n n C01 H012 JJ4 sing 197 n n C01 H013 JJ4 sing 198 n n C03 H031 JJ4 sing 199 n n N07 H071 JJ4 sing 200 n n C11 H111 JJ4 sing 201 n n C11 H112 JJ4 sing 202 n n C12 H121 JJ4 sing 203 n n C14 H142 JJ4 sing 204 n n C14 H141 JJ4 sing 205 n n C16 H162 JJ4 sing 206 n n C16 H161 JJ4 sing 207 n n # _atom_sites.entry_id 5QEE _atom_sites.fract_transf_matrix[1][1] 0.011205 _atom_sites.fract_transf_matrix[1][2] 0.006469 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JJ4 A 1 401 1 JJ4 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 122 HOH HOH . D 4 HOH A 2 502 80 HOH HOH . D 4 HOH A 3 503 95 HOH HOH . D 4 HOH A 4 504 121 HOH HOH . D 4 HOH A 5 505 22 HOH HOH . D 4 HOH A 6 506 89 HOH HOH . D 4 HOH A 7 507 86 HOH HOH . D 4 HOH A 8 508 76 HOH HOH . D 4 HOH A 9 509 87 HOH HOH . D 4 HOH A 10 510 85 HOH HOH . D 4 HOH A 11 511 131 HOH HOH . D 4 HOH A 12 512 92 HOH HOH . D 4 HOH A 13 513 49 HOH HOH . D 4 HOH A 14 514 111 HOH HOH . D 4 HOH A 15 515 64 HOH HOH . D 4 HOH A 16 516 51 HOH HOH . D 4 HOH A 17 517 72 HOH HOH . D 4 HOH A 18 518 107 HOH HOH . D 4 HOH A 19 519 18 HOH HOH . D 4 HOH A 20 520 47 HOH HOH . D 4 HOH A 21 521 101 HOH HOH . D 4 HOH A 22 522 54 HOH HOH . D 4 HOH A 23 523 27 HOH HOH . D 4 HOH A 24 524 16 HOH HOH . D 4 HOH A 25 525 6 HOH HOH . D 4 HOH A 26 526 34 HOH HOH . D 4 HOH A 27 527 48 HOH HOH . D 4 HOH A 28 528 74 HOH HOH . D 4 HOH A 29 529 20 HOH HOH . D 4 HOH A 30 530 66 HOH HOH . D 4 HOH A 31 531 71 HOH HOH . D 4 HOH A 32 532 12 HOH HOH . D 4 HOH A 33 533 58 HOH HOH . D 4 HOH A 34 534 21 HOH HOH . D 4 HOH A 35 535 69 HOH HOH . D 4 HOH A 36 536 4 HOH HOH . D 4 HOH A 37 537 9 HOH HOH . D 4 HOH A 38 538 106 HOH HOH . D 4 HOH A 39 539 78 HOH HOH . D 4 HOH A 40 540 37 HOH HOH . D 4 HOH A 41 541 3 HOH HOH . D 4 HOH A 42 542 10 HOH HOH . D 4 HOH A 43 543 8 HOH HOH . D 4 HOH A 44 544 1 HOH HOH . D 4 HOH A 45 545 23 HOH HOH . D 4 HOH A 46 546 39 HOH HOH . D 4 HOH A 47 547 68 HOH HOH . D 4 HOH A 48 548 70 HOH HOH . D 4 HOH A 49 549 114 HOH HOH . D 4 HOH A 50 550 83 HOH HOH . D 4 HOH A 51 551 33 HOH HOH . D 4 HOH A 52 552 36 HOH HOH . D 4 HOH A 53 553 108 HOH HOH . D 4 HOH A 54 554 7 HOH HOH . D 4 HOH A 55 555 128 HOH HOH . D 4 HOH A 56 556 82 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 30 HOH HOH . D 4 HOH A 59 559 73 HOH HOH . D 4 HOH A 60 560 79 HOH HOH . D 4 HOH A 61 561 63 HOH HOH . D 4 HOH A 62 562 46 HOH HOH . D 4 HOH A 63 563 15 HOH HOH . D 4 HOH A 64 564 88 HOH HOH . D 4 HOH A 65 565 28 HOH HOH . D 4 HOH A 66 566 62 HOH HOH . D 4 HOH A 67 567 60 HOH HOH . D 4 HOH A 68 568 38 HOH HOH . D 4 HOH A 69 569 50 HOH HOH . D 4 HOH A 70 570 55 HOH HOH . D 4 HOH A 71 571 5 HOH HOH . D 4 HOH A 72 572 115 HOH HOH . D 4 HOH A 73 573 102 HOH HOH . D 4 HOH A 74 574 105 HOH HOH . D 4 HOH A 75 575 11 HOH HOH . D 4 HOH A 76 576 45 HOH HOH . D 4 HOH A 77 577 13 HOH HOH . D 4 HOH A 78 578 81 HOH HOH . D 4 HOH A 79 579 67 HOH HOH . D 4 HOH A 80 580 41 HOH HOH . D 4 HOH A 81 581 24 HOH HOH . D 4 HOH A 82 582 116 HOH HOH . D 4 HOH A 83 583 40 HOH HOH . D 4 HOH A 84 584 96 HOH HOH . D 4 HOH A 85 585 43 HOH HOH . D 4 HOH A 86 586 103 HOH HOH . D 4 HOH A 87 587 112 HOH HOH . D 4 HOH A 88 588 19 HOH HOH . D 4 HOH A 89 589 130 HOH HOH . D 4 HOH A 90 590 2 HOH HOH . D 4 HOH A 91 591 14 HOH HOH . D 4 HOH A 92 592 84 HOH HOH . D 4 HOH A 93 593 17 HOH HOH . D 4 HOH A 94 594 29 HOH HOH . D 4 HOH A 95 595 90 HOH HOH . D 4 HOH A 96 596 31 HOH HOH . D 4 HOH A 97 597 56 HOH HOH . D 4 HOH A 98 598 98 HOH HOH . D 4 HOH A 99 599 32 HOH HOH . D 4 HOH A 100 600 35 HOH HOH . D 4 HOH A 101 601 119 HOH HOH . D 4 HOH A 102 602 110 HOH HOH . D 4 HOH A 103 603 53 HOH HOH . D 4 HOH A 104 604 120 HOH HOH . D 4 HOH A 105 605 125 HOH HOH . D 4 HOH A 106 606 118 HOH HOH . D 4 HOH A 107 607 44 HOH HOH . D 4 HOH A 108 608 97 HOH HOH . D 4 HOH A 109 609 61 HOH HOH . D 4 HOH A 110 610 42 HOH HOH . D 4 HOH A 111 611 94 HOH HOH . D 4 HOH A 112 612 104 HOH HOH . D 4 HOH A 113 613 127 HOH HOH . D 4 HOH A 114 614 109 HOH HOH . D 4 HOH A 115 615 25 HOH HOH . D 4 HOH A 116 616 75 HOH HOH . D 4 HOH A 117 617 99 HOH HOH . D 4 HOH A 118 618 100 HOH HOH . D 4 HOH A 119 619 124 HOH HOH . D 4 HOH A 120 620 126 HOH HOH . D 4 HOH A 121 621 123 HOH HOH . D 4 HOH A 122 622 117 HOH HOH . D 4 HOH A 123 623 26 HOH HOH . D 4 HOH A 124 624 59 HOH HOH . D 4 HOH A 125 625 93 HOH HOH . D 4 HOH A 126 626 65 HOH HOH . D 4 HOH A 127 627 52 HOH HOH . D 4 HOH A 128 628 129 HOH HOH . D 4 HOH A 129 629 113 HOH HOH . D 4 HOH A 130 630 77 HOH HOH . D 4 HOH A 131 631 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JJ4 . C . B 2 -40.792 32.467 11.04 0.13 30.98 ? C10 JJ4 401 A 1 HETATM 2 C C10 JJ4 . D . B 2 -40.792 32.467 11.04 0.13 30.98 ? C10 JJ4 401 A 1 HETATM 3 C C13 JJ4 . C . B 2 -41.15 36.058 11.751 0.13 33.34 ? C13 JJ4 401 A 1 HETATM 4 C C13 JJ4 . D . B 2 -41.15 36.058 11.751 0.13 33.34 ? C13 JJ4 401 A 1 HETATM 5 C C15 JJ4 . C . B 2 -41.756 36.972 9.69 0.13 35.76 ? C15 JJ4 401 A 1 HETATM 6 C C15 JJ4 . D . B 2 -41.756 36.972 9.69 0.13 35.76 ? C15 JJ4 401 A 1 HETATM 7 C C01 JJ4 . C . B 2 -34.334 28.419 11.76 0.13 37.29 ? C01 JJ4 401 A 1 HETATM 8 C C01 JJ4 . D . B 2 -34.334 28.419 11.76 0.13 37.29 ? C01 JJ4 401 A 1 HETATM 9 C C02 JJ4 . C . B 2 -35.498 29.227 11.771 0.13 48.14 ? C02 JJ4 401 A 1 HETATM 10 C C02 JJ4 . D . B 2 -35.498 29.227 11.771 0.13 48.14 ? C02 JJ4 401 A 1 HETATM 11 C C03 JJ4 . C . B 2 -35.533 30.428 12.313 0.13 41.99 ? C03 JJ4 401 A 1 HETATM 12 C C03 JJ4 . D . B 2 -35.533 30.428 12.313 0.13 41.99 ? C03 JJ4 401 A 1 HETATM 13 N N04 JJ4 . C . B 2 -36.739 31.065 12.217 0.13 44.58 ? N04 JJ4 401 A 1 HETATM 14 N N04 JJ4 . D . B 2 -36.739 31.065 12.217 0.13 44.58 ? N04 JJ4 401 A 1 HETATM 15 C C05 JJ4 . C . B 2 -37.589 30.317 11.634 0.13 40.08 ? C05 JJ4 401 A 1 HETATM 16 C C05 JJ4 . D . B 2 -37.589 30.317 11.634 0.13 40.08 ? C05 JJ4 401 A 1 HETATM 17 S S06 JJ4 . C . B 2 -36.913 28.819 11.177 0.13 40.98 ? S06 JJ4 401 A 1 HETATM 18 S S06 JJ4 . D . B 2 -36.913 28.819 11.177 0.13 40.98 ? S06 JJ4 401 A 1 HETATM 19 N N07 JJ4 . C . B 2 -38.868 30.698 11.35 0.13 34.59 ? N07 JJ4 401 A 1 HETATM 20 N N07 JJ4 . D . B 2 -38.868 30.698 11.35 0.13 34.59 ? N07 JJ4 401 A 1 HETATM 21 C C08 JJ4 . C . B 2 -39.298 32.048 11.33 0.13 34.04 ? C08 JJ4 401 A 1 HETATM 22 C C08 JJ4 . D . B 2 -39.298 32.048 11.33 0.13 34.04 ? C08 JJ4 401 A 1 HETATM 23 O O09 JJ4 . C . B 2 -38.508 32.829 11.597 0.13 44.97 ? O09 JJ4 401 A 1 HETATM 24 O O09 JJ4 . D . B 2 -38.508 32.829 11.597 0.13 44.97 ? O09 JJ4 401 A 1 HETATM 25 C C11 JJ4 . C . B 2 -41.013 33.904 10.327 0.13 34.31 ? C11 JJ4 401 A 1 HETATM 26 C C11 JJ4 . D . B 2 -41.013 33.904 10.327 0.13 34.31 ? C11 JJ4 401 A 1 HETATM 27 C C12 JJ4 . C . B 2 -41.931 34.92 11.089 0.13 36.96 ? C12 JJ4 401 A 1 HETATM 28 C C12 JJ4 . D . B 2 -41.931 34.92 11.089 0.13 36.96 ? C12 JJ4 401 A 1 HETATM 29 C C14 JJ4 . C . B 2 -40.632 36.867 10.614 0.13 31.51 ? C14 JJ4 401 A 1 HETATM 30 C C14 JJ4 . D . B 2 -40.632 36.867 10.614 0.13 31.51 ? C14 JJ4 401 A 1 HETATM 31 C C16 JJ4 . C . B 2 -42.794 35.892 10.204 0.13 39.32 ? C16 JJ4 401 A 1 HETATM 32 C C16 JJ4 . D . B 2 -42.794 35.892 10.204 0.13 39.32 ? C16 JJ4 401 A 1 HETATM 33 H H102 JJ4 . C . B 2 -41.327 31.761 10.371 0.13 37.17 ? H102 JJ4 401 A 1 HETATM 34 H H102 JJ4 . D . B 2 -41.327 31.761 10.371 0.13 37.17 ? H102 JJ4 401 A 1 HETATM 35 H H101 JJ4 . C . B 2 -41.278 32.487 12.038 0.13 37.17 ? H101 JJ4 401 A 1 HETATM 36 H H101 JJ4 . D . B 2 -41.278 32.487 12.038 0.13 37.17 ? H101 JJ4 401 A 1 HETATM 37 H H131 JJ4 . C . B 2 -41.806 36.634 12.421 0.13 40.01 ? H131 JJ4 401 A 1 HETATM 38 H H131 JJ4 . D . B 2 -41.806 36.634 12.421 0.13 40.01 ? H131 JJ4 401 A 1 HETATM 39 H H132 JJ4 . C . B 2 -40.3 35.678 12.356 0.13 40.01 ? H132 JJ4 401 A 1 HETATM 40 H H132 JJ4 . D . B 2 -40.3 35.678 12.356 0.13 40.01 ? H132 JJ4 401 A 1 HETATM 41 H H152 JJ4 . C . B 2 -42.199 37.99 9.705 0.13 42.91 ? H152 JJ4 401 A 1 HETATM 42 H H152 JJ4 . D . B 2 -42.199 37.99 9.705 0.13 42.91 ? H152 JJ4 401 A 1 HETATM 43 H H151 JJ4 . C . B 2 -41.451 36.761 8.644 0.13 42.91 ? H151 JJ4 401 A 1 HETATM 44 H H151 JJ4 . D . B 2 -41.451 36.761 8.644 0.13 42.91 ? H151 JJ4 401 A 1 HETATM 45 H H011 JJ4 . C . B 2 -34.445 27.427 11.294 0.13 44.74 ? H011 JJ4 401 A 1 HETATM 46 H H011 JJ4 . D . B 2 -34.445 27.427 11.294 0.13 44.74 ? H011 JJ4 401 A 1 HETATM 47 H H012 JJ4 . C . B 2 -33.98 28.222 12.783 0.13 44.74 ? H012 JJ4 401 A 1 HETATM 48 H H012 JJ4 . D . B 2 -33.98 28.222 12.783 0.13 44.74 ? H012 JJ4 401 A 1 HETATM 49 H H013 JJ4 . C . B 2 -33.493 28.875 11.218 0.13 44.74 ? H013 JJ4 401 A 1 HETATM 50 H H013 JJ4 . D . B 2 -33.493 28.875 11.218 0.13 44.74 ? H013 JJ4 401 A 1 HETATM 51 H H031 JJ4 . C . B 2 -34.727 30.958 12.816 0.13 50.39 ? H031 JJ4 401 A 1 HETATM 52 H H031 JJ4 . D . B 2 -34.727 30.958 12.816 0.13 50.39 ? H031 JJ4 401 A 1 HETATM 53 H H071 JJ4 . C . B 2 -39.552 29.97 11.115 0.13 41.51 ? H071 JJ4 401 A 1 HETATM 54 H H071 JJ4 . D . B 2 -39.552 29.97 11.115 0.13 41.51 ? H071 JJ4 401 A 1 HETATM 55 H H111 JJ4 . C . B 2 -41.411 33.776 9.302 0.13 41.17 ? H111 JJ4 401 A 1 HETATM 56 H H111 JJ4 . D . B 2 -41.411 33.776 9.302 0.13 41.17 ? H111 JJ4 401 A 1 HETATM 57 H H112 JJ4 . C . B 2 -40.026 34.392 10.174 0.13 41.17 ? H112 JJ4 401 A 1 HETATM 58 H H112 JJ4 . D . B 2 -40.026 34.392 10.174 0.13 41.17 ? H112 JJ4 401 A 1 HETATM 59 H H121 JJ4 . C . B 2 -42.546 34.377 11.85 0.13 44.35 ? H121 JJ4 401 A 1 HETATM 60 H H121 JJ4 . D . B 2 -42.546 34.377 11.85 0.13 44.35 ? H121 JJ4 401 A 1 HETATM 61 H H142 JJ4 . C . B 2 -40.296 37.875 10.935 0.13 37.81 ? H142 JJ4 401 A 1 HETATM 62 H H142 JJ4 . D . B 2 -40.296 37.875 10.935 0.13 37.81 ? H142 JJ4 401 A 1 HETATM 63 H H141 JJ4 . C . B 2 -39.764 36.377 10.125 0.13 37.81 ? H141 JJ4 401 A 1 HETATM 64 H H141 JJ4 . D . B 2 -39.764 36.377 10.125 0.13 37.81 ? H141 JJ4 401 A 1 HETATM 65 H H162 JJ4 . C . B 2 -43.264 35.347 9.359 0.13 47.18 ? H162 JJ4 401 A 1 HETATM 66 H H162 JJ4 . D . B 2 -43.264 35.347 9.359 0.13 47.18 ? H162 JJ4 401 A 1 HETATM 67 H H161 JJ4 . C . B 2 -43.613 36.375 10.777 0.13 47.18 ? H161 JJ4 401 A 1 HETATM 68 H H161 JJ4 . D . B 2 -43.613 36.375 10.777 0.13 47.18 ? H161 JJ4 401 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 68 #