data_5QEE # _model_server_result.job_id yXFSSmqxcOOoRCipwZfHog _model_server_result.datetime_utc '2024-11-08 00:36:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QEE # _exptl.entry_id 5QEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QEE _cell.length_a 89.242 _cell.length_b 89.242 _cell.length_c 105.791 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 369 n n C C2 TRS sing 370 n n C C3 TRS sing 371 n n C N TRS sing 372 n n C1 O1 TRS sing 373 n n C1 H11 TRS sing 374 n n C1 H12 TRS sing 375 n n C2 O2 TRS sing 376 n n C2 H21 TRS sing 377 n n C2 H22 TRS sing 378 n n C3 O3 TRS sing 379 n n C3 H31 TRS sing 380 n n C3 H32 TRS sing 381 n n N HN1 TRS sing 382 n n N HN2 TRS sing 383 n n N HN3 TRS sing 384 n n O1 HO1 TRS sing 385 n n O2 HO2 TRS sing 386 n n O3 HO3 TRS sing 387 n n # _atom_sites.entry_id 5QEE _atom_sites.fract_transf_matrix[1][1] 0.011205 _atom_sites.fract_transf_matrix[1][2] 0.006469 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JJ4 A 1 401 1 JJ4 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 122 HOH HOH . D 4 HOH A 2 502 80 HOH HOH . D 4 HOH A 3 503 95 HOH HOH . D 4 HOH A 4 504 121 HOH HOH . D 4 HOH A 5 505 22 HOH HOH . D 4 HOH A 6 506 89 HOH HOH . D 4 HOH A 7 507 86 HOH HOH . D 4 HOH A 8 508 76 HOH HOH . D 4 HOH A 9 509 87 HOH HOH . D 4 HOH A 10 510 85 HOH HOH . D 4 HOH A 11 511 131 HOH HOH . D 4 HOH A 12 512 92 HOH HOH . D 4 HOH A 13 513 49 HOH HOH . D 4 HOH A 14 514 111 HOH HOH . D 4 HOH A 15 515 64 HOH HOH . D 4 HOH A 16 516 51 HOH HOH . D 4 HOH A 17 517 72 HOH HOH . D 4 HOH A 18 518 107 HOH HOH . D 4 HOH A 19 519 18 HOH HOH . D 4 HOH A 20 520 47 HOH HOH . D 4 HOH A 21 521 101 HOH HOH . D 4 HOH A 22 522 54 HOH HOH . D 4 HOH A 23 523 27 HOH HOH . D 4 HOH A 24 524 16 HOH HOH . D 4 HOH A 25 525 6 HOH HOH . D 4 HOH A 26 526 34 HOH HOH . D 4 HOH A 27 527 48 HOH HOH . D 4 HOH A 28 528 74 HOH HOH . D 4 HOH A 29 529 20 HOH HOH . D 4 HOH A 30 530 66 HOH HOH . D 4 HOH A 31 531 71 HOH HOH . D 4 HOH A 32 532 12 HOH HOH . D 4 HOH A 33 533 58 HOH HOH . D 4 HOH A 34 534 21 HOH HOH . D 4 HOH A 35 535 69 HOH HOH . D 4 HOH A 36 536 4 HOH HOH . D 4 HOH A 37 537 9 HOH HOH . D 4 HOH A 38 538 106 HOH HOH . D 4 HOH A 39 539 78 HOH HOH . D 4 HOH A 40 540 37 HOH HOH . D 4 HOH A 41 541 3 HOH HOH . D 4 HOH A 42 542 10 HOH HOH . D 4 HOH A 43 543 8 HOH HOH . D 4 HOH A 44 544 1 HOH HOH . D 4 HOH A 45 545 23 HOH HOH . D 4 HOH A 46 546 39 HOH HOH . D 4 HOH A 47 547 68 HOH HOH . D 4 HOH A 48 548 70 HOH HOH . D 4 HOH A 49 549 114 HOH HOH . D 4 HOH A 50 550 83 HOH HOH . D 4 HOH A 51 551 33 HOH HOH . D 4 HOH A 52 552 36 HOH HOH . D 4 HOH A 53 553 108 HOH HOH . D 4 HOH A 54 554 7 HOH HOH . D 4 HOH A 55 555 128 HOH HOH . D 4 HOH A 56 556 82 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 30 HOH HOH . D 4 HOH A 59 559 73 HOH HOH . D 4 HOH A 60 560 79 HOH HOH . D 4 HOH A 61 561 63 HOH HOH . D 4 HOH A 62 562 46 HOH HOH . D 4 HOH A 63 563 15 HOH HOH . D 4 HOH A 64 564 88 HOH HOH . D 4 HOH A 65 565 28 HOH HOH . D 4 HOH A 66 566 62 HOH HOH . D 4 HOH A 67 567 60 HOH HOH . D 4 HOH A 68 568 38 HOH HOH . D 4 HOH A 69 569 50 HOH HOH . D 4 HOH A 70 570 55 HOH HOH . D 4 HOH A 71 571 5 HOH HOH . D 4 HOH A 72 572 115 HOH HOH . D 4 HOH A 73 573 102 HOH HOH . D 4 HOH A 74 574 105 HOH HOH . D 4 HOH A 75 575 11 HOH HOH . D 4 HOH A 76 576 45 HOH HOH . D 4 HOH A 77 577 13 HOH HOH . D 4 HOH A 78 578 81 HOH HOH . D 4 HOH A 79 579 67 HOH HOH . D 4 HOH A 80 580 41 HOH HOH . D 4 HOH A 81 581 24 HOH HOH . D 4 HOH A 82 582 116 HOH HOH . D 4 HOH A 83 583 40 HOH HOH . D 4 HOH A 84 584 96 HOH HOH . D 4 HOH A 85 585 43 HOH HOH . D 4 HOH A 86 586 103 HOH HOH . D 4 HOH A 87 587 112 HOH HOH . D 4 HOH A 88 588 19 HOH HOH . D 4 HOH A 89 589 130 HOH HOH . D 4 HOH A 90 590 2 HOH HOH . D 4 HOH A 91 591 14 HOH HOH . D 4 HOH A 92 592 84 HOH HOH . D 4 HOH A 93 593 17 HOH HOH . D 4 HOH A 94 594 29 HOH HOH . D 4 HOH A 95 595 90 HOH HOH . D 4 HOH A 96 596 31 HOH HOH . D 4 HOH A 97 597 56 HOH HOH . D 4 HOH A 98 598 98 HOH HOH . D 4 HOH A 99 599 32 HOH HOH . D 4 HOH A 100 600 35 HOH HOH . D 4 HOH A 101 601 119 HOH HOH . D 4 HOH A 102 602 110 HOH HOH . D 4 HOH A 103 603 53 HOH HOH . D 4 HOH A 104 604 120 HOH HOH . D 4 HOH A 105 605 125 HOH HOH . D 4 HOH A 106 606 118 HOH HOH . D 4 HOH A 107 607 44 HOH HOH . D 4 HOH A 108 608 97 HOH HOH . D 4 HOH A 109 609 61 HOH HOH . D 4 HOH A 110 610 42 HOH HOH . D 4 HOH A 111 611 94 HOH HOH . D 4 HOH A 112 612 104 HOH HOH . D 4 HOH A 113 613 127 HOH HOH . D 4 HOH A 114 614 109 HOH HOH . D 4 HOH A 115 615 25 HOH HOH . D 4 HOH A 116 616 75 HOH HOH . D 4 HOH A 117 617 99 HOH HOH . D 4 HOH A 118 618 100 HOH HOH . D 4 HOH A 119 619 124 HOH HOH . D 4 HOH A 120 620 126 HOH HOH . D 4 HOH A 121 621 123 HOH HOH . D 4 HOH A 122 622 117 HOH HOH . D 4 HOH A 123 623 26 HOH HOH . D 4 HOH A 124 624 59 HOH HOH . D 4 HOH A 125 625 93 HOH HOH . D 4 HOH A 126 626 65 HOH HOH . D 4 HOH A 127 627 52 HOH HOH . D 4 HOH A 128 628 129 HOH HOH . D 4 HOH A 129 629 113 HOH HOH . D 4 HOH A 130 630 77 HOH HOH . D 4 HOH A 131 631 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.748 -2.19 -4.737 1 52.88 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -44.968 -2.133 -3.832 1 53.26 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.153 -2.673 -6.1 1 83.58 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.693 -3.082 -4.172 1 75.49 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.203 -0.839 -4.876 1 77.13 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.175 -0.769 -3.493 1 78.46 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.088 -1.709 -6.58 1 92.02 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.397 -2.503 -2.961 1 58.1 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.784 -2.728 -2.935 1 63.92 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.834 -2.533 -4.363 1 63.92 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.607 -3.663 -6.016 1 100.29 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.272 -2.73 -6.743 1 100.29 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -43.053 -4.1 -4.011 1 90.59 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.795 -3.108 -4.793 1 90.59 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.91 -0.489 -3.95 1 92.56 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.388 -0.86 -5.51 1 92.56 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.927 -0.214 -5.267 1 92.56 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.947 -0.694 -2.916 1 94.15 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.39 -1.965 -7.463 1 110.42 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -42.943 -1.714 -2.839 1 69.72 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #