data_5QEG # _model_server_result.job_id 057TLUAmhsNUKDoEsgVwvg _model_server_result.datetime_utc '2024-10-18 04:21:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qeg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5QEG # _exptl.entry_id 5QEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QEG _cell.length_a 89.451 _cell.length_b 89.451 _cell.length_c 106.215 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O GLU 6 A GLU 6 1_555 A CD1 ILE 10 A ILE 10 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.537 ? covale ? covale2 A O GLU 6 A GLU 6 1_555 A CD1 ILE 10 A ILE 10 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.537 ? covale ? covale3 A CD GLU 76 A GLU 76 1_555 A NH2 ARG 238 A ARG 238 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.256 ? covale ? covale4 A CD GLU 76 A GLU 76 1_555 A NH2 ARG 238 A ARG 238 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.256 ? covale ? covale5 A OE1 GLU 76 A GLU 76 1_555 A NH2 ARG 238 A ARG 238 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.236 ? covale ? covale6 A OE1 GLU 76 A GLU 76 1_555 A NH2 ARG 238 A ARG 238 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.236 ? covale ? covale7 A OE2 GLU 76 A GLU 76 1_555 A NH2 ARG 238 A ARG 238 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.29 ? covale ? covale8 A OE2 GLU 76 A GLU 76 1_555 A NH2 ARG 238 A ARG 238 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.29 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # _atom_sites.entry_id 5QEG _atom_sites.fract_transf_matrix[1][1] 0.011179 _atom_sites.fract_transf_matrix[1][2] 0.006454 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GRY A 1 401 1 GRY LIG . C 2 GRY A 1 402 2 GRY LIG . D 3 TRS A 1 403 500 TRS TRS . E 4 HOH A 1 501 130 HOH HOH . E 4 HOH A 2 502 111 HOH HOH . E 4 HOH A 3 503 140 HOH HOH . E 4 HOH A 4 504 40 HOH HOH . E 4 HOH A 5 505 184 HOH HOH . E 4 HOH A 6 506 117 HOH HOH . E 4 HOH A 7 507 57 HOH HOH . E 4 HOH A 8 508 131 HOH HOH . E 4 HOH A 9 509 114 HOH HOH . E 4 HOH A 10 510 174 HOH HOH . E 4 HOH A 11 511 95 HOH HOH . E 4 HOH A 12 512 169 HOH HOH . E 4 HOH A 13 513 199 HOH HOH . E 4 HOH A 14 514 4 HOH HOH . E 4 HOH A 15 515 84 HOH HOH . E 4 HOH A 16 516 49 HOH HOH . E 4 HOH A 17 517 85 HOH HOH . E 4 HOH A 18 518 8 HOH HOH . E 4 HOH A 19 519 6 HOH HOH . E 4 HOH A 20 520 58 HOH HOH . E 4 HOH A 21 521 68 HOH HOH . E 4 HOH A 22 522 133 HOH HOH . E 4 HOH A 23 523 41 HOH HOH . E 4 HOH A 24 524 74 HOH HOH . E 4 HOH A 25 525 22 HOH HOH . E 4 HOH A 26 526 180 HOH HOH . E 4 HOH A 27 527 33 HOH HOH . E 4 HOH A 28 528 20 HOH HOH . E 4 HOH A 29 529 118 HOH HOH . E 4 HOH A 30 530 166 HOH HOH . E 4 HOH A 31 531 79 HOH HOH . E 4 HOH A 32 532 115 HOH HOH . E 4 HOH A 33 533 18 HOH HOH . E 4 HOH A 34 534 175 HOH HOH . E 4 HOH A 35 535 123 HOH HOH . E 4 HOH A 36 536 24 HOH HOH . E 4 HOH A 37 537 116 HOH HOH . E 4 HOH A 38 538 44 HOH HOH . E 4 HOH A 39 539 9 HOH HOH . E 4 HOH A 40 540 80 HOH HOH . E 4 HOH A 41 541 25 HOH HOH . E 4 HOH A 42 542 141 HOH HOH . E 4 HOH A 43 543 91 HOH HOH . E 4 HOH A 44 544 126 HOH HOH . E 4 HOH A 45 545 113 HOH HOH . E 4 HOH A 46 546 59 HOH HOH . E 4 HOH A 47 547 31 HOH HOH . E 4 HOH A 48 548 93 HOH HOH . E 4 HOH A 49 549 182 HOH HOH . E 4 HOH A 50 550 94 HOH HOH . E 4 HOH A 51 551 3 HOH HOH . E 4 HOH A 52 552 185 HOH HOH . E 4 HOH A 53 553 54 HOH HOH . E 4 HOH A 54 554 14 HOH HOH . E 4 HOH A 55 555 172 HOH HOH . E 4 HOH A 56 556 43 HOH HOH . E 4 HOH A 57 557 27 HOH HOH . E 4 HOH A 58 558 189 HOH HOH . E 4 HOH A 59 559 46 HOH HOH . E 4 HOH A 60 560 1 HOH HOH . E 4 HOH A 61 561 168 HOH HOH . E 4 HOH A 62 562 63 HOH HOH . E 4 HOH A 63 563 165 HOH HOH . E 4 HOH A 64 564 13 HOH HOH . E 4 HOH A 65 565 105 HOH HOH . E 4 HOH A 66 566 10 HOH HOH . E 4 HOH A 67 567 167 HOH HOH . E 4 HOH A 68 568 34 HOH HOH . E 4 HOH A 69 569 178 HOH HOH . E 4 HOH A 70 570 179 HOH HOH . E 4 HOH A 71 571 38 HOH HOH . E 4 HOH A 72 572 42 HOH HOH . E 4 HOH A 73 573 76 HOH HOH . E 4 HOH A 74 574 7 HOH HOH . E 4 HOH A 75 575 48 HOH HOH . E 4 HOH A 76 576 11 HOH HOH . E 4 HOH A 77 577 158 HOH HOH . E 4 HOH A 78 578 107 HOH HOH . E 4 HOH A 79 579 67 HOH HOH . E 4 HOH A 80 580 65 HOH HOH . E 4 HOH A 81 581 60 HOH HOH . E 4 HOH A 82 582 164 HOH HOH . E 4 HOH A 83 583 5 HOH HOH . E 4 HOH A 84 584 32 HOH HOH . E 4 HOH A 85 585 110 HOH HOH . E 4 HOH A 86 586 87 HOH HOH . E 4 HOH A 87 587 100 HOH HOH . E 4 HOH A 88 588 26 HOH HOH . E 4 HOH A 89 589 61 HOH HOH . E 4 HOH A 90 590 16 HOH HOH . E 4 HOH A 91 591 88 HOH HOH . E 4 HOH A 92 592 12 HOH HOH . E 4 HOH A 93 593 86 HOH HOH . E 4 HOH A 94 594 28 HOH HOH . E 4 HOH A 95 595 56 HOH HOH . E 4 HOH A 96 596 77 HOH HOH . E 4 HOH A 97 597 62 HOH HOH . E 4 HOH A 98 598 82 HOH HOH . E 4 HOH A 99 599 132 HOH HOH . E 4 HOH A 100 600 45 HOH HOH . E 4 HOH A 101 601 89 HOH HOH . E 4 HOH A 102 602 53 HOH HOH . E 4 HOH A 103 603 81 HOH HOH . E 4 HOH A 104 604 101 HOH HOH . E 4 HOH A 105 605 192 HOH HOH . E 4 HOH A 106 606 139 HOH HOH . E 4 HOH A 107 607 170 HOH HOH . E 4 HOH A 108 608 71 HOH HOH . E 4 HOH A 109 609 156 HOH HOH . E 4 HOH A 110 610 23 HOH HOH . E 4 HOH A 111 611 124 HOH HOH . E 4 HOH A 112 612 92 HOH HOH . E 4 HOH A 113 613 103 HOH HOH . E 4 HOH A 114 614 37 HOH HOH . E 4 HOH A 115 615 39 HOH HOH . E 4 HOH A 116 616 2 HOH HOH . E 4 HOH A 117 617 15 HOH HOH . E 4 HOH A 118 618 21 HOH HOH . E 4 HOH A 119 619 157 HOH HOH . E 4 HOH A 120 620 102 HOH HOH . E 4 HOH A 121 621 35 HOH HOH . E 4 HOH A 122 622 17 HOH HOH . E 4 HOH A 123 623 153 HOH HOH . E 4 HOH A 124 624 90 HOH HOH . E 4 HOH A 125 625 78 HOH HOH . E 4 HOH A 126 626 55 HOH HOH . E 4 HOH A 127 627 19 HOH HOH . E 4 HOH A 128 628 66 HOH HOH . E 4 HOH A 129 629 186 HOH HOH . E 4 HOH A 130 630 52 HOH HOH . E 4 HOH A 131 631 154 HOH HOH . E 4 HOH A 132 632 129 HOH HOH . E 4 HOH A 133 633 50 HOH HOH . E 4 HOH A 134 634 149 HOH HOH . E 4 HOH A 135 635 109 HOH HOH . E 4 HOH A 136 636 137 HOH HOH . E 4 HOH A 137 637 161 HOH HOH . E 4 HOH A 138 638 36 HOH HOH . E 4 HOH A 139 639 70 HOH HOH . E 4 HOH A 140 640 99 HOH HOH . E 4 HOH A 141 641 104 HOH HOH . E 4 HOH A 142 642 198 HOH HOH . E 4 HOH A 143 643 195 HOH HOH . E 4 HOH A 144 644 47 HOH HOH . E 4 HOH A 145 645 135 HOH HOH . E 4 HOH A 146 646 97 HOH HOH . E 4 HOH A 147 647 142 HOH HOH . E 4 HOH A 148 648 201 HOH HOH . E 4 HOH A 149 649 119 HOH HOH . E 4 HOH A 150 650 127 HOH HOH . E 4 HOH A 151 651 155 HOH HOH . E 4 HOH A 152 652 112 HOH HOH . E 4 HOH A 153 653 177 HOH HOH . E 4 HOH A 154 654 29 HOH HOH . E 4 HOH A 155 655 134 HOH HOH . E 4 HOH A 156 656 51 HOH HOH . E 4 HOH A 157 657 193 HOH HOH . E 4 HOH A 158 658 159 HOH HOH . E 4 HOH A 159 659 121 HOH HOH . E 4 HOH A 160 660 147 HOH HOH . E 4 HOH A 161 661 200 HOH HOH . E 4 HOH A 162 662 183 HOH HOH . E 4 HOH A 163 663 160 HOH HOH . E 4 HOH A 164 664 197 HOH HOH . E 4 HOH A 165 665 73 HOH HOH . E 4 HOH A 166 666 138 HOH HOH . E 4 HOH A 167 667 120 HOH HOH . E 4 HOH A 168 668 187 HOH HOH . E 4 HOH A 169 669 150 HOH HOH . E 4 HOH A 170 670 152 HOH HOH . E 4 HOH A 171 671 144 HOH HOH . E 4 HOH A 172 672 136 HOH HOH . E 4 HOH A 173 673 190 HOH HOH . E 4 HOH A 174 674 75 HOH HOH . E 4 HOH A 175 675 151 HOH HOH . E 4 HOH A 176 676 69 HOH HOH . E 4 HOH A 177 677 30 HOH HOH . E 4 HOH A 178 678 146 HOH HOH . E 4 HOH A 179 679 96 HOH HOH . E 4 HOH A 180 680 72 HOH HOH . E 4 HOH A 181 681 143 HOH HOH . E 4 HOH A 182 682 106 HOH HOH . E 4 HOH A 183 683 176 HOH HOH . E 4 HOH A 184 684 128 HOH HOH . E 4 HOH A 185 685 108 HOH HOH . E 4 HOH A 186 686 64 HOH HOH . E 4 HOH A 187 687 194 HOH HOH . E 4 HOH A 188 688 173 HOH HOH . E 4 HOH A 189 689 125 HOH HOH . E 4 HOH A 190 690 98 HOH HOH . E 4 HOH A 191 691 122 HOH HOH . E 4 HOH A 192 692 83 HOH HOH . E 4 HOH A 193 693 145 HOH HOH . E 4 HOH A 194 694 171 HOH HOH . E 4 HOH A 195 695 148 HOH HOH . E 4 HOH A 196 696 202 HOH HOH . E 4 HOH A 197 697 162 HOH HOH . E 4 HOH A 198 698 163 HOH HOH . E 4 HOH A 199 699 181 HOH HOH . E 4 HOH A 200 700 188 HOH HOH . E 4 HOH A 201 701 196 HOH HOH . E 4 HOH A 202 702 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 43.69 2.159 -4.811 1 28.62 ? C TRS 403 A 1 HETATM 2 C C1 TRS . . . D 3 44.889 2.068 -3.878 1 54.96 ? C1 TRS 403 A 1 HETATM 3 C C2 TRS . . . D 3 44.105 2.656 -6.155 1 87.15 ? C2 TRS 403 A 1 HETATM 4 C C3 TRS . . . D 3 42.643 3.056 -4.218 1 94.93 ? C3 TRS 403 A 1 HETATM 5 N N TRS . . . D 3 43.11 0.81 -4.946 1 109.78 ? N TRS 403 A 1 HETATM 6 O O1 TRS . . . D 3 45.034 0.704 -3.504 1 53.67 ? O1 TRS 403 A 1 HETATM 7 O O2 TRS . . . D 3 45.124 1.76 -6.581 1 51.51 ? O2 TRS 403 A 1 HETATM 8 O O3 TRS . . . D 3 42.407 2.464 -2.996 1 28.69 ? O3 TRS 403 A 1 HETATM 9 H H11 TRS . . . D 3 44.713 2.689 -2.997 1 65.96 ? H11 TRS 403 A 1 HETATM 10 H H12 TRS . . . D 3 45.782 2.419 -4.398 1 65.96 ? H12 TRS 403 A 1 HETATM 11 H H21 TRS . . . D 3 44.479 3.678 -6.066 1 104.58 ? H21 TRS 403 A 1 HETATM 12 H H22 TRS . . . D 3 43.246 2.64 -6.83 1 104.58 ? H22 TRS 403 A 1 HETATM 13 H H31 TRS . . . D 3 42.995 4.078 -4.065 1 113.92 ? H31 TRS 403 A 1 HETATM 14 H H32 TRS . . . D 3 41.718 3.073 -4.799 1 113.92 ? H32 TRS 403 A 1 HETATM 15 H HN1 TRS . . . D 3 42.827 0.462 -4.015 1 131.73 ? HN1 TRS 403 A 1 HETATM 16 H HN2 TRS . . . D 3 42.283 0.851 -5.564 1 131.73 ? HN2 TRS 403 A 1 HETATM 17 H HN3 TRS . . . D 3 43.813 0.172 -5.353 1 131.73 ? HN3 TRS 403 A 1 HETATM 18 H HO1 TRS . . . D 3 45.79 0.612 -2.909 1 64.41 ? HO1 TRS 403 A 1 HETATM 19 H HO2 TRS . . . D 3 45.442 2.026 -7.455 1 61.82 ? HO2 TRS 403 A 1 HETATM 20 H HO3 TRS . . . D 3 42.968 1.682 -2.903 1 34.43 ? HO3 TRS 403 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #