data_5QEL # _model_server_result.job_id NDz8Jd3TFhgKS6XtTxoWYQ _model_server_result.datetime_utc '2024-11-24 19:13:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QEL # _exptl.entry_id 5QEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QEL _cell.length_a 89.775 _cell.length_b 89.775 _cell.length_c 106.344 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 359 n n C C2 TRS sing 360 n n C C3 TRS sing 361 n n C N TRS sing 362 n n C1 O1 TRS sing 363 n n C1 H11 TRS sing 364 n n C1 H12 TRS sing 365 n n C2 O2 TRS sing 366 n n C2 H21 TRS sing 367 n n C2 H22 TRS sing 368 n n C3 O3 TRS sing 369 n n C3 H31 TRS sing 370 n n C3 H32 TRS sing 371 n n N HN1 TRS sing 372 n n N HN2 TRS sing 373 n n N HN3 TRS sing 374 n n O1 HO1 TRS sing 375 n n O2 HO2 TRS sing 376 n n O3 HO3 TRS sing 377 n n # _atom_sites.entry_id 5QEL _atom_sites.fract_transf_matrix[1][1] 0.011139 _atom_sites.fract_transf_matrix[1][2] 0.006431 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JKS A 1 401 1 JKS LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 72 HOH HOH . D 4 HOH A 2 502 133 HOH HOH . D 4 HOH A 3 503 205 HOH HOH . D 4 HOH A 4 504 167 HOH HOH . D 4 HOH A 5 505 207 HOH HOH . D 4 HOH A 6 506 245 HOH HOH . D 4 HOH A 7 507 170 HOH HOH . D 4 HOH A 8 508 87 HOH HOH . D 4 HOH A 9 509 276 HOH HOH . D 4 HOH A 10 510 262 HOH HOH . D 4 HOH A 11 511 73 HOH HOH . D 4 HOH A 12 512 162 HOH HOH . D 4 HOH A 13 513 234 HOH HOH . D 4 HOH A 14 514 117 HOH HOH . D 4 HOH A 15 515 60 HOH HOH . D 4 HOH A 16 516 229 HOH HOH . D 4 HOH A 17 517 247 HOH HOH . D 4 HOH A 18 518 206 HOH HOH . D 4 HOH A 19 519 217 HOH HOH . D 4 HOH A 20 520 154 HOH HOH . D 4 HOH A 21 521 165 HOH HOH . D 4 HOH A 22 522 274 HOH HOH . D 4 HOH A 23 523 195 HOH HOH . D 4 HOH A 24 524 20 HOH HOH . D 4 HOH A 25 525 182 HOH HOH . D 4 HOH A 26 526 126 HOH HOH . D 4 HOH A 27 527 91 HOH HOH . D 4 HOH A 28 528 22 HOH HOH . D 4 HOH A 29 529 138 HOH HOH . D 4 HOH A 30 530 280 HOH HOH . D 4 HOH A 31 531 3 HOH HOH . D 4 HOH A 32 532 118 HOH HOH . D 4 HOH A 33 533 61 HOH HOH . D 4 HOH A 34 534 48 HOH HOH . D 4 HOH A 35 535 135 HOH HOH . D 4 HOH A 36 536 1 HOH HOH . D 4 HOH A 37 537 80 HOH HOH . D 4 HOH A 38 538 65 HOH HOH . D 4 HOH A 39 539 197 HOH HOH . D 4 HOH A 40 540 172 HOH HOH . D 4 HOH A 41 541 83 HOH HOH . D 4 HOH A 42 542 18 HOH HOH . D 4 HOH A 43 543 155 HOH HOH . D 4 HOH A 44 544 179 HOH HOH . D 4 HOH A 45 545 34 HOH HOH . D 4 HOH A 46 546 26 HOH HOH . D 4 HOH A 47 547 109 HOH HOH . D 4 HOH A 48 548 63 HOH HOH . D 4 HOH A 49 549 181 HOH HOH . D 4 HOH A 50 550 57 HOH HOH . D 4 HOH A 51 551 59 HOH HOH . D 4 HOH A 52 552 85 HOH HOH . D 4 HOH A 53 553 142 HOH HOH . D 4 HOH A 54 554 43 HOH HOH . D 4 HOH A 55 555 130 HOH HOH . D 4 HOH A 56 556 102 HOH HOH . D 4 HOH A 57 557 6 HOH HOH . D 4 HOH A 58 558 44 HOH HOH . D 4 HOH A 59 559 86 HOH HOH . D 4 HOH A 60 560 41 HOH HOH . D 4 HOH A 61 561 258 HOH HOH . D 4 HOH A 62 562 4 HOH HOH . D 4 HOH A 63 563 123 HOH HOH . D 4 HOH A 64 564 137 HOH HOH . D 4 HOH A 65 565 25 HOH HOH . D 4 HOH A 66 566 159 HOH HOH . D 4 HOH A 67 567 125 HOH HOH . D 4 HOH A 68 568 40 HOH HOH . D 4 HOH A 69 569 183 HOH HOH . D 4 HOH A 70 570 56 HOH HOH . D 4 HOH A 71 571 31 HOH HOH . D 4 HOH A 72 572 132 HOH HOH . D 4 HOH A 73 573 161 HOH HOH . D 4 HOH A 74 574 114 HOH HOH . D 4 HOH A 75 575 8 HOH HOH . D 4 HOH A 76 576 11 HOH HOH . D 4 HOH A 77 577 38 HOH HOH . D 4 HOH A 78 578 42 HOH HOH . D 4 HOH A 79 579 5 HOH HOH . D 4 HOH A 80 580 95 HOH HOH . D 4 HOH A 81 581 76 HOH HOH . D 4 HOH A 82 582 27 HOH HOH . D 4 HOH A 83 583 9 HOH HOH . D 4 HOH A 84 584 81 HOH HOH . D 4 HOH A 85 585 143 HOH HOH . D 4 HOH A 86 586 250 HOH HOH . D 4 HOH A 87 587 145 HOH HOH . D 4 HOH A 88 588 113 HOH HOH . D 4 HOH A 89 589 100 HOH HOH . D 4 HOH A 90 590 13 HOH HOH . D 4 HOH A 91 591 104 HOH HOH . D 4 HOH A 92 592 111 HOH HOH . D 4 HOH A 93 593 180 HOH HOH . D 4 HOH A 94 594 69 HOH HOH . D 4 HOH A 95 595 120 HOH HOH . D 4 HOH A 96 596 10 HOH HOH . D 4 HOH A 97 597 28 HOH HOH . D 4 HOH A 98 598 96 HOH HOH . D 4 HOH A 99 599 12 HOH HOH . D 4 HOH A 100 600 14 HOH HOH . D 4 HOH A 101 601 157 HOH HOH . D 4 HOH A 102 602 62 HOH HOH . D 4 HOH A 103 603 98 HOH HOH . D 4 HOH A 104 604 2 HOH HOH . D 4 HOH A 105 605 124 HOH HOH . D 4 HOH A 106 606 153 HOH HOH . D 4 HOH A 107 607 21 HOH HOH . D 4 HOH A 108 608 171 HOH HOH . D 4 HOH A 109 609 45 HOH HOH . D 4 HOH A 110 610 39 HOH HOH . D 4 HOH A 111 611 88 HOH HOH . D 4 HOH A 112 612 16 HOH HOH . D 4 HOH A 113 613 71 HOH HOH . D 4 HOH A 114 614 55 HOH HOH . D 4 HOH A 115 615 32 HOH HOH . D 4 HOH A 116 616 271 HOH HOH . D 4 HOH A 117 617 249 HOH HOH . D 4 HOH A 118 618 79 HOH HOH . D 4 HOH A 119 619 151 HOH HOH . D 4 HOH A 120 620 24 HOH HOH . D 4 HOH A 121 621 185 HOH HOH . D 4 HOH A 122 622 202 HOH HOH . D 4 HOH A 123 623 174 HOH HOH . D 4 HOH A 124 624 33 HOH HOH . D 4 HOH A 125 625 211 HOH HOH . D 4 HOH A 126 626 46 HOH HOH . D 4 HOH A 127 627 19 HOH HOH . D 4 HOH A 128 628 239 HOH HOH . D 4 HOH A 129 629 127 HOH HOH . D 4 HOH A 130 630 58 HOH HOH . D 4 HOH A 131 631 108 HOH HOH . D 4 HOH A 132 632 99 HOH HOH . D 4 HOH A 133 633 156 HOH HOH . D 4 HOH A 134 634 35 HOH HOH . D 4 HOH A 135 635 233 HOH HOH . D 4 HOH A 136 636 203 HOH HOH . D 4 HOH A 137 637 37 HOH HOH . D 4 HOH A 138 638 101 HOH HOH . D 4 HOH A 139 639 136 HOH HOH . D 4 HOH A 140 640 223 HOH HOH . D 4 HOH A 141 641 51 HOH HOH . D 4 HOH A 142 642 7 HOH HOH . D 4 HOH A 143 643 225 HOH HOH . D 4 HOH A 144 644 121 HOH HOH . D 4 HOH A 145 645 212 HOH HOH . D 4 HOH A 146 646 147 HOH HOH . D 4 HOH A 147 647 23 HOH HOH . D 4 HOH A 148 648 241 HOH HOH . D 4 HOH A 149 649 17 HOH HOH . D 4 HOH A 150 650 54 HOH HOH . D 4 HOH A 151 651 93 HOH HOH . D 4 HOH A 152 652 94 HOH HOH . D 4 HOH A 153 653 107 HOH HOH . D 4 HOH A 154 654 115 HOH HOH . D 4 HOH A 155 655 75 HOH HOH . D 4 HOH A 156 656 36 HOH HOH . D 4 HOH A 157 657 47 HOH HOH . D 4 HOH A 158 658 158 HOH HOH . D 4 HOH A 159 659 15 HOH HOH . D 4 HOH A 160 660 134 HOH HOH . D 4 HOH A 161 661 82 HOH HOH . D 4 HOH A 162 662 52 HOH HOH . D 4 HOH A 163 663 279 HOH HOH . D 4 HOH A 164 664 139 HOH HOH . D 4 HOH A 165 665 192 HOH HOH . D 4 HOH A 166 666 112 HOH HOH . D 4 HOH A 167 667 237 HOH HOH . D 4 HOH A 168 668 97 HOH HOH . D 4 HOH A 169 669 210 HOH HOH . D 4 HOH A 170 670 265 HOH HOH . D 4 HOH A 171 671 89 HOH HOH . D 4 HOH A 172 672 50 HOH HOH . D 4 HOH A 173 673 105 HOH HOH . D 4 HOH A 174 674 200 HOH HOH . D 4 HOH A 175 675 131 HOH HOH . D 4 HOH A 176 676 222 HOH HOH . D 4 HOH A 177 677 194 HOH HOH . D 4 HOH A 178 678 116 HOH HOH . D 4 HOH A 179 679 196 HOH HOH . D 4 HOH A 180 680 188 HOH HOH . D 4 HOH A 181 681 53 HOH HOH . D 4 HOH A 182 682 201 HOH HOH . D 4 HOH A 183 683 164 HOH HOH . D 4 HOH A 184 684 149 HOH HOH . D 4 HOH A 185 685 214 HOH HOH . D 4 HOH A 186 686 68 HOH HOH . D 4 HOH A 187 687 148 HOH HOH . D 4 HOH A 188 688 163 HOH HOH . D 4 HOH A 189 689 221 HOH HOH . D 4 HOH A 190 690 240 HOH HOH . D 4 HOH A 191 691 70 HOH HOH . D 4 HOH A 192 692 257 HOH HOH . D 4 HOH A 193 693 84 HOH HOH . D 4 HOH A 194 694 166 HOH HOH . D 4 HOH A 195 695 110 HOH HOH . D 4 HOH A 196 696 224 HOH HOH . D 4 HOH A 197 697 78 HOH HOH . D 4 HOH A 198 698 29 HOH HOH . D 4 HOH A 199 699 160 HOH HOH . D 4 HOH A 200 700 263 HOH HOH . D 4 HOH A 201 701 106 HOH HOH . D 4 HOH A 202 702 264 HOH HOH . D 4 HOH A 203 703 275 HOH HOH . D 4 HOH A 204 704 168 HOH HOH . D 4 HOH A 205 705 189 HOH HOH . D 4 HOH A 206 706 227 HOH HOH . D 4 HOH A 207 707 177 HOH HOH . D 4 HOH A 208 708 64 HOH HOH . D 4 HOH A 209 709 169 HOH HOH . D 4 HOH A 210 710 253 HOH HOH . D 4 HOH A 211 711 236 HOH HOH . D 4 HOH A 212 712 178 HOH HOH . D 4 HOH A 213 713 278 HOH HOH . D 4 HOH A 214 714 140 HOH HOH . D 4 HOH A 215 715 255 HOH HOH . D 4 HOH A 216 716 49 HOH HOH . D 4 HOH A 217 717 187 HOH HOH . D 4 HOH A 218 718 260 HOH HOH . D 4 HOH A 219 719 204 HOH HOH . D 4 HOH A 220 720 184 HOH HOH . D 4 HOH A 221 721 235 HOH HOH . D 4 HOH A 222 722 268 HOH HOH . D 4 HOH A 223 723 251 HOH HOH . D 4 HOH A 224 724 228 HOH HOH . D 4 HOH A 225 725 269 HOH HOH . D 4 HOH A 226 726 244 HOH HOH . D 4 HOH A 227 727 243 HOH HOH . D 4 HOH A 228 728 190 HOH HOH . D 4 HOH A 229 729 103 HOH HOH . D 4 HOH A 230 730 152 HOH HOH . D 4 HOH A 231 731 186 HOH HOH . D 4 HOH A 232 732 30 HOH HOH . D 4 HOH A 233 733 193 HOH HOH . D 4 HOH A 234 734 74 HOH HOH . D 4 HOH A 235 735 77 HOH HOH . D 4 HOH A 236 736 119 HOH HOH . D 4 HOH A 237 737 122 HOH HOH . D 4 HOH A 238 738 191 HOH HOH . D 4 HOH A 239 739 150 HOH HOH . D 4 HOH A 240 740 246 HOH HOH . D 4 HOH A 241 741 266 HOH HOH . D 4 HOH A 242 742 273 HOH HOH . D 4 HOH A 243 743 176 HOH HOH . D 4 HOH A 244 744 216 HOH HOH . D 4 HOH A 245 745 128 HOH HOH . D 4 HOH A 246 746 267 HOH HOH . D 4 HOH A 247 747 173 HOH HOH . D 4 HOH A 248 748 248 HOH HOH . D 4 HOH A 249 749 141 HOH HOH . D 4 HOH A 250 750 208 HOH HOH . D 4 HOH A 251 751 270 HOH HOH . D 4 HOH A 252 752 66 HOH HOH . D 4 HOH A 253 753 242 HOH HOH . D 4 HOH A 254 754 199 HOH HOH . D 4 HOH A 255 755 209 HOH HOH . D 4 HOH A 256 756 231 HOH HOH . D 4 HOH A 257 757 90 HOH HOH . D 4 HOH A 258 758 129 HOH HOH . D 4 HOH A 259 759 259 HOH HOH . D 4 HOH A 260 760 144 HOH HOH . D 4 HOH A 261 761 254 HOH HOH . D 4 HOH A 262 762 215 HOH HOH . D 4 HOH A 263 763 272 HOH HOH . D 4 HOH A 264 764 238 HOH HOH . D 4 HOH A 265 765 261 HOH HOH . D 4 HOH A 266 766 230 HOH HOH . D 4 HOH A 267 767 92 HOH HOH . D 4 HOH A 268 768 277 HOH HOH . D 4 HOH A 269 769 198 HOH HOH . D 4 HOH A 270 770 213 HOH HOH . D 4 HOH A 271 771 252 HOH HOH . D 4 HOH A 272 772 67 HOH HOH . D 4 HOH A 273 773 226 HOH HOH . D 4 HOH A 274 774 175 HOH HOH . D 4 HOH A 275 775 232 HOH HOH . D 4 HOH A 276 776 218 HOH HOH . D 4 HOH A 277 777 146 HOH HOH . D 4 HOH A 278 778 256 HOH HOH . D 4 HOH A 279 779 220 HOH HOH . D 4 HOH A 280 780 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.81 -2.113 -4.963 1 19.33 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -44.981 -2.013 -3.992 1 47.89 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.171 -2.607 -6.321 1 86.04 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.722 -2.95 -4.347 1 69.66 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.234 -0.734 -5.056 1 63.22 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.166 -0.67 -3.616 1 56.54 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.2 -1.755 -6.768 1 44.45 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.49 -2.429 -3.107 1 36.18 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.77 -2.613 -3.104 1 57.46 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.888 -2.383 -4.475 1 57.46 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.511 -3.642 -6.253 1 103.25 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.296 -2.553 -6.972 1 103.25 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -43.037 -3.991 -4.251 1 83.59 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.807 -2.899 -4.94 1 83.59 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.986 -0.4 -4.11 1 75.86 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.387 -0.754 -5.647 1 75.86 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.932 -0.097 -5.474 1 75.86 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.909 -0.607 -3 1 67.85 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.481 -2.026 -7.652 1 53.34 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -43.077 -1.675 -2.959 1 43.42 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #