data_5QEP # _model_server_result.job_id BatFazDWQHEpYy_bc6b9xA _model_server_result.datetime_utc '2024-11-22 00:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QEP # _exptl.entry_id 5QEP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QEP _cell.length_a 89.923 _cell.length_b 89.923 _cell.length_c 106.547 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 359 n n C C2 TRS sing 360 n n C C3 TRS sing 361 n n C N TRS sing 362 n n C1 O1 TRS sing 363 n n C1 H11 TRS sing 364 n n C1 H12 TRS sing 365 n n C2 O2 TRS sing 366 n n C2 H21 TRS sing 367 n n C2 H22 TRS sing 368 n n C3 O3 TRS sing 369 n n C3 H31 TRS sing 370 n n C3 H32 TRS sing 371 n n N HN1 TRS sing 372 n n N HN2 TRS sing 373 n n N HN3 TRS sing 374 n n O1 HO1 TRS sing 375 n n O2 HO2 TRS sing 376 n n O3 HO3 TRS sing 377 n n # _atom_sites.entry_id 5QEP _atom_sites.fract_transf_matrix[1][1] 0.011121 _atom_sites.fract_transf_matrix[1][2] 0.00642 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JL7 A 1 401 1 JL7 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 166 HOH HOH . D 4 HOH A 2 502 137 HOH HOH . D 4 HOH A 3 503 65 HOH HOH . D 4 HOH A 4 504 184 HOH HOH . D 4 HOH A 5 505 189 HOH HOH . D 4 HOH A 6 506 112 HOH HOH . D 4 HOH A 7 507 164 HOH HOH . D 4 HOH A 8 508 202 HOH HOH . D 4 HOH A 9 509 168 HOH HOH . D 4 HOH A 10 510 220 HOH HOH . D 4 HOH A 11 511 182 HOH HOH . D 4 HOH A 12 512 57 HOH HOH . D 4 HOH A 13 513 85 HOH HOH . D 4 HOH A 14 514 221 HOH HOH . D 4 HOH A 15 515 103 HOH HOH . D 4 HOH A 16 516 169 HOH HOH . D 4 HOH A 17 517 172 HOH HOH . D 4 HOH A 18 518 70 HOH HOH . D 4 HOH A 19 519 145 HOH HOH . D 4 HOH A 20 520 40 HOH HOH . D 4 HOH A 21 521 86 HOH HOH . D 4 HOH A 22 522 135 HOH HOH . D 4 HOH A 23 523 62 HOH HOH . D 4 HOH A 24 524 187 HOH HOH . D 4 HOH A 25 525 27 HOH HOH . D 4 HOH A 26 526 191 HOH HOH . D 4 HOH A 27 527 19 HOH HOH . D 4 HOH A 28 528 128 HOH HOH . D 4 HOH A 29 529 114 HOH HOH . D 4 HOH A 30 530 10 HOH HOH . D 4 HOH A 31 531 194 HOH HOH . D 4 HOH A 32 532 193 HOH HOH . D 4 HOH A 33 533 58 HOH HOH . D 4 HOH A 34 534 108 HOH HOH . D 4 HOH A 35 535 24 HOH HOH . D 4 HOH A 36 536 30 HOH HOH . D 4 HOH A 37 537 139 HOH HOH . D 4 HOH A 38 538 165 HOH HOH . D 4 HOH A 39 539 118 HOH HOH . D 4 HOH A 40 540 144 HOH HOH . D 4 HOH A 41 541 123 HOH HOH . D 4 HOH A 42 542 17 HOH HOH . D 4 HOH A 43 543 207 HOH HOH . D 4 HOH A 44 544 21 HOH HOH . D 4 HOH A 45 545 140 HOH HOH . D 4 HOH A 46 546 102 HOH HOH . D 4 HOH A 47 547 31 HOH HOH . D 4 HOH A 48 548 25 HOH HOH . D 4 HOH A 49 549 77 HOH HOH . D 4 HOH A 50 550 131 HOH HOH . D 4 HOH A 51 551 59 HOH HOH . D 4 HOH A 52 552 6 HOH HOH . D 4 HOH A 53 553 113 HOH HOH . D 4 HOH A 54 554 73 HOH HOH . D 4 HOH A 55 555 5 HOH HOH . D 4 HOH A 56 556 93 HOH HOH . D 4 HOH A 57 557 120 HOH HOH . D 4 HOH A 58 558 13 HOH HOH . D 4 HOH A 59 559 54 HOH HOH . D 4 HOH A 60 560 32 HOH HOH . D 4 HOH A 61 561 91 HOH HOH . D 4 HOH A 62 562 219 HOH HOH . D 4 HOH A 63 563 36 HOH HOH . D 4 HOH A 64 564 23 HOH HOH . D 4 HOH A 65 565 1 HOH HOH . D 4 HOH A 66 566 173 HOH HOH . D 4 HOH A 67 567 26 HOH HOH . D 4 HOH A 68 568 22 HOH HOH . D 4 HOH A 69 569 121 HOH HOH . D 4 HOH A 70 570 41 HOH HOH . D 4 HOH A 71 571 170 HOH HOH . D 4 HOH A 72 572 69 HOH HOH . D 4 HOH A 73 573 12 HOH HOH . D 4 HOH A 74 574 4 HOH HOH . D 4 HOH A 75 575 11 HOH HOH . D 4 HOH A 76 576 3 HOH HOH . D 4 HOH A 77 577 185 HOH HOH . D 4 HOH A 78 578 124 HOH HOH . D 4 HOH A 79 579 147 HOH HOH . D 4 HOH A 80 580 78 HOH HOH . D 4 HOH A 81 581 39 HOH HOH . D 4 HOH A 82 582 208 HOH HOH . D 4 HOH A 83 583 16 HOH HOH . D 4 HOH A 84 584 129 HOH HOH . D 4 HOH A 85 585 136 HOH HOH . D 4 HOH A 86 586 215 HOH HOH . D 4 HOH A 87 587 14 HOH HOH . D 4 HOH A 88 588 42 HOH HOH . D 4 HOH A 89 589 80 HOH HOH . D 4 HOH A 90 590 79 HOH HOH . D 4 HOH A 91 591 8 HOH HOH . D 4 HOH A 92 592 95 HOH HOH . D 4 HOH A 93 593 97 HOH HOH . D 4 HOH A 94 594 101 HOH HOH . D 4 HOH A 95 595 99 HOH HOH . D 4 HOH A 96 596 96 HOH HOH . D 4 HOH A 97 597 175 HOH HOH . D 4 HOH A 98 598 203 HOH HOH . D 4 HOH A 99 599 158 HOH HOH . D 4 HOH A 100 600 76 HOH HOH . D 4 HOH A 101 601 44 HOH HOH . D 4 HOH A 102 602 111 HOH HOH . D 4 HOH A 103 603 82 HOH HOH . D 4 HOH A 104 604 60 HOH HOH . D 4 HOH A 105 605 52 HOH HOH . D 4 HOH A 106 606 61 HOH HOH . D 4 HOH A 107 607 2 HOH HOH . D 4 HOH A 108 608 7 HOH HOH . D 4 HOH A 109 609 9 HOH HOH . D 4 HOH A 110 610 46 HOH HOH . D 4 HOH A 111 611 34 HOH HOH . D 4 HOH A 112 612 174 HOH HOH . D 4 HOH A 113 613 18 HOH HOH . D 4 HOH A 114 614 43 HOH HOH . D 4 HOH A 115 615 33 HOH HOH . D 4 HOH A 116 616 53 HOH HOH . D 4 HOH A 117 617 154 HOH HOH . D 4 HOH A 118 618 56 HOH HOH . D 4 HOH A 119 619 94 HOH HOH . D 4 HOH A 120 620 115 HOH HOH . D 4 HOH A 121 621 68 HOH HOH . D 4 HOH A 122 622 209 HOH HOH . D 4 HOH A 123 623 106 HOH HOH . D 4 HOH A 124 624 109 HOH HOH . D 4 HOH A 125 625 83 HOH HOH . D 4 HOH A 126 626 143 HOH HOH . D 4 HOH A 127 627 100 HOH HOH . D 4 HOH A 128 628 141 HOH HOH . D 4 HOH A 129 629 87 HOH HOH . D 4 HOH A 130 630 51 HOH HOH . D 4 HOH A 131 631 98 HOH HOH . D 4 HOH A 132 632 20 HOH HOH . D 4 HOH A 133 633 183 HOH HOH . D 4 HOH A 134 634 72 HOH HOH . D 4 HOH A 135 635 133 HOH HOH . D 4 HOH A 136 636 200 HOH HOH . D 4 HOH A 137 637 205 HOH HOH . D 4 HOH A 138 638 84 HOH HOH . D 4 HOH A 139 639 45 HOH HOH . D 4 HOH A 140 640 38 HOH HOH . D 4 HOH A 141 641 15 HOH HOH . D 4 HOH A 142 642 179 HOH HOH . D 4 HOH A 143 643 37 HOH HOH . D 4 HOH A 144 644 50 HOH HOH . D 4 HOH A 145 645 134 HOH HOH . D 4 HOH A 146 646 90 HOH HOH . D 4 HOH A 147 647 167 HOH HOH . D 4 HOH A 148 648 148 HOH HOH . D 4 HOH A 149 649 35 HOH HOH . D 4 HOH A 150 650 48 HOH HOH . D 4 HOH A 151 651 119 HOH HOH . D 4 HOH A 152 652 49 HOH HOH . D 4 HOH A 153 653 218 HOH HOH . D 4 HOH A 154 654 89 HOH HOH . D 4 HOH A 155 655 66 HOH HOH . D 4 HOH A 156 656 75 HOH HOH . D 4 HOH A 157 657 110 HOH HOH . D 4 HOH A 158 658 159 HOH HOH . D 4 HOH A 159 659 28 HOH HOH . D 4 HOH A 160 660 223 HOH HOH . D 4 HOH A 161 661 81 HOH HOH . D 4 HOH A 162 662 157 HOH HOH . D 4 HOH A 163 663 142 HOH HOH . D 4 HOH A 164 664 107 HOH HOH . D 4 HOH A 165 665 125 HOH HOH . D 4 HOH A 166 666 213 HOH HOH . D 4 HOH A 167 667 67 HOH HOH . D 4 HOH A 168 668 122 HOH HOH . D 4 HOH A 169 669 201 HOH HOH . D 4 HOH A 170 670 146 HOH HOH . D 4 HOH A 171 671 152 HOH HOH . D 4 HOH A 172 672 156 HOH HOH . D 4 HOH A 173 673 214 HOH HOH . D 4 HOH A 174 674 195 HOH HOH . D 4 HOH A 175 675 149 HOH HOH . D 4 HOH A 176 676 29 HOH HOH . D 4 HOH A 177 677 47 HOH HOH . D 4 HOH A 178 678 150 HOH HOH . D 4 HOH A 179 679 126 HOH HOH . D 4 HOH A 180 680 188 HOH HOH . D 4 HOH A 181 681 127 HOH HOH . D 4 HOH A 182 682 55 HOH HOH . D 4 HOH A 183 683 171 HOH HOH . D 4 HOH A 184 684 199 HOH HOH . D 4 HOH A 185 685 104 HOH HOH . D 4 HOH A 186 686 217 HOH HOH . D 4 HOH A 187 687 74 HOH HOH . D 4 HOH A 188 688 204 HOH HOH . D 4 HOH A 189 689 116 HOH HOH . D 4 HOH A 190 690 71 HOH HOH . D 4 HOH A 191 691 177 HOH HOH . D 4 HOH A 192 692 186 HOH HOH . D 4 HOH A 193 693 196 HOH HOH . D 4 HOH A 194 694 224 HOH HOH . D 4 HOH A 195 695 222 HOH HOH . D 4 HOH A 196 696 216 HOH HOH . D 4 HOH A 197 697 163 HOH HOH . D 4 HOH A 198 698 105 HOH HOH . D 4 HOH A 199 699 210 HOH HOH . D 4 HOH A 200 700 206 HOH HOH . D 4 HOH A 201 701 160 HOH HOH . D 4 HOH A 202 702 212 HOH HOH . D 4 HOH A 203 703 178 HOH HOH . D 4 HOH A 204 704 197 HOH HOH . D 4 HOH A 205 705 88 HOH HOH . D 4 HOH A 206 706 63 HOH HOH . D 4 HOH A 207 707 153 HOH HOH . D 4 HOH A 208 708 198 HOH HOH . D 4 HOH A 209 709 192 HOH HOH . D 4 HOH A 210 710 138 HOH HOH . D 4 HOH A 211 711 130 HOH HOH . D 4 HOH A 212 712 155 HOH HOH . D 4 HOH A 213 713 181 HOH HOH . D 4 HOH A 214 714 211 HOH HOH . D 4 HOH A 215 715 117 HOH HOH . D 4 HOH A 216 716 161 HOH HOH . D 4 HOH A 217 717 190 HOH HOH . D 4 HOH A 218 718 92 HOH HOH . D 4 HOH A 219 719 180 HOH HOH . D 4 HOH A 220 720 64 HOH HOH . D 4 HOH A 221 721 162 HOH HOH . D 4 HOH A 222 722 176 HOH HOH . D 4 HOH A 223 723 151 HOH HOH . D 4 HOH A 224 724 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.824 -2.068 -4.884 1 25.36 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -45.015 -1.983 -3.938 1 50.94 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.212 -2.561 -6.247 1 81.82 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.744 -2.942 -4.315 1 84.67 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.253 -0.694 -5.022 1 66.58 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.23 -0.641 -3.572 1 93.66 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.235 -1.695 -6.703 1 50.44 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.495 -2.425 -3.077 1 36.89 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.813 -2.576 -3.044 1 61.13 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.906 -2.371 -4.438 1 61.13 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.572 -3.589 -6.174 1 98.19 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.344 -2.525 -6.908 1 98.19 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -43.072 -3.979 -4.217 1 101.6 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.833 -2.903 -4.916 1 101.6 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.958 -0.349 -4.094 1 79.89 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.437 -0.722 -5.655 1 79.89 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.97 -0.061 -5.413 1 79.89 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.987 -0.588 -2.972 1 112.4 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.523 -1.971 -7.584 1 60.52 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -43.071 -1.663 -2.924 1 44.27 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #