data_5QEQ # _model_server_result.job_id AlqHlrvGICN-VFTRyZPMrQ _model_server_result.datetime_utc '2024-11-22 00:40:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qeq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QEQ # _exptl.entry_id 5QEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QEQ _cell.length_a 89.59 _cell.length_b 89.59 _cell.length_c 106.279 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CD2 TYR 46 A TYR 46 1_555 A O MET 282 A MET 282 2_545 ? C ? ? C ? ? ? ? ? ? ? 1.267 ? covale ? covale2 A CD2 TYR 46 A TYR 46 1_555 A O MET 282 A MET 282 2_545 ? D ? ? D ? ? ? ? ? ? ? 1.267 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 356 n n C C2 TRS sing 357 n n C C3 TRS sing 358 n n C N TRS sing 359 n n C1 O1 TRS sing 360 n n C1 H11 TRS sing 361 n n C1 H12 TRS sing 362 n n C2 O2 TRS sing 363 n n C2 H21 TRS sing 364 n n C2 H22 TRS sing 365 n n C3 O3 TRS sing 366 n n C3 H31 TRS sing 367 n n C3 H32 TRS sing 368 n n N HN1 TRS sing 369 n n N HN2 TRS sing 370 n n N HN3 TRS sing 371 n n O1 HO1 TRS sing 372 n n O2 HO2 TRS sing 373 n n O3 HO3 TRS sing 374 n n # _atom_sites.entry_id 5QEQ _atom_sites.fract_transf_matrix[1][1] 0.011162 _atom_sites.fract_transf_matrix[1][2] 0.006444 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JL4 A 1 401 1 JL4 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 117 HOH HOH . D 4 HOH A 2 502 163 HOH HOH . D 4 HOH A 3 503 74 HOH HOH . D 4 HOH A 4 504 148 HOH HOH . D 4 HOH A 5 505 167 HOH HOH . D 4 HOH A 6 506 85 HOH HOH . D 4 HOH A 7 507 4 HOH HOH . D 4 HOH A 8 508 180 HOH HOH . D 4 HOH A 9 509 107 HOH HOH . D 4 HOH A 10 510 136 HOH HOH . D 4 HOH A 11 511 5 HOH HOH . D 4 HOH A 12 512 52 HOH HOH . D 4 HOH A 13 513 69 HOH HOH . D 4 HOH A 14 514 131 HOH HOH . D 4 HOH A 15 515 90 HOH HOH . D 4 HOH A 16 516 37 HOH HOH . D 4 HOH A 17 517 123 HOH HOH . D 4 HOH A 18 518 155 HOH HOH . D 4 HOH A 19 519 173 HOH HOH . D 4 HOH A 20 520 84 HOH HOH . D 4 HOH A 21 521 53 HOH HOH . D 4 HOH A 22 522 98 HOH HOH . D 4 HOH A 23 523 18 HOH HOH . D 4 HOH A 24 524 23 HOH HOH . D 4 HOH A 25 525 6 HOH HOH . D 4 HOH A 26 526 3 HOH HOH . D 4 HOH A 27 527 101 HOH HOH . D 4 HOH A 28 528 51 HOH HOH . D 4 HOH A 29 529 20 HOH HOH . D 4 HOH A 30 530 97 HOH HOH . D 4 HOH A 31 531 118 HOH HOH . D 4 HOH A 32 532 22 HOH HOH . D 4 HOH A 33 533 30 HOH HOH . D 4 HOH A 34 534 7 HOH HOH . D 4 HOH A 35 535 71 HOH HOH . D 4 HOH A 36 536 57 HOH HOH . D 4 HOH A 37 537 8 HOH HOH . D 4 HOH A 38 538 14 HOH HOH . D 4 HOH A 39 539 40 HOH HOH . D 4 HOH A 40 540 94 HOH HOH . D 4 HOH A 41 541 108 HOH HOH . D 4 HOH A 42 542 39 HOH HOH . D 4 HOH A 43 543 129 HOH HOH . D 4 HOH A 44 544 56 HOH HOH . D 4 HOH A 45 545 1 HOH HOH . D 4 HOH A 46 546 130 HOH HOH . D 4 HOH A 47 547 61 HOH HOH . D 4 HOH A 48 548 93 HOH HOH . D 4 HOH A 49 549 100 HOH HOH . D 4 HOH A 50 550 31 HOH HOH . D 4 HOH A 51 551 88 HOH HOH . D 4 HOH A 52 552 143 HOH HOH . D 4 HOH A 53 553 58 HOH HOH . D 4 HOH A 54 554 77 HOH HOH . D 4 HOH A 55 555 132 HOH HOH . D 4 HOH A 56 556 36 HOH HOH . D 4 HOH A 57 557 65 HOH HOH . D 4 HOH A 58 558 170 HOH HOH . D 4 HOH A 59 559 114 HOH HOH . D 4 HOH A 60 560 112 HOH HOH . D 4 HOH A 61 561 83 HOH HOH . D 4 HOH A 62 562 67 HOH HOH . D 4 HOH A 63 563 81 HOH HOH . D 4 HOH A 64 564 153 HOH HOH . D 4 HOH A 65 565 147 HOH HOH . D 4 HOH A 66 566 103 HOH HOH . D 4 HOH A 67 567 140 HOH HOH . D 4 HOH A 68 568 91 HOH HOH . D 4 HOH A 69 569 42 HOH HOH . D 4 HOH A 70 570 75 HOH HOH . D 4 HOH A 71 571 26 HOH HOH . D 4 HOH A 72 572 106 HOH HOH . D 4 HOH A 73 573 78 HOH HOH . D 4 HOH A 74 574 33 HOH HOH . D 4 HOH A 75 575 68 HOH HOH . D 4 HOH A 76 576 13 HOH HOH . D 4 HOH A 77 577 111 HOH HOH . D 4 HOH A 78 578 76 HOH HOH . D 4 HOH A 79 579 9 HOH HOH . D 4 HOH A 80 580 55 HOH HOH . D 4 HOH A 81 581 43 HOH HOH . D 4 HOH A 82 582 116 HOH HOH . D 4 HOH A 83 583 105 HOH HOH . D 4 HOH A 84 584 27 HOH HOH . D 4 HOH A 85 585 146 HOH HOH . D 4 HOH A 86 586 16 HOH HOH . D 4 HOH A 87 587 60 HOH HOH . D 4 HOH A 88 588 10 HOH HOH . D 4 HOH A 89 589 12 HOH HOH . D 4 HOH A 90 590 11 HOH HOH . D 4 HOH A 91 591 172 HOH HOH . D 4 HOH A 92 592 32 HOH HOH . D 4 HOH A 93 593 24 HOH HOH . D 4 HOH A 94 594 63 HOH HOH . D 4 HOH A 95 595 38 HOH HOH . D 4 HOH A 96 596 181 HOH HOH . D 4 HOH A 97 597 145 HOH HOH . D 4 HOH A 98 598 104 HOH HOH . D 4 HOH A 99 599 152 HOH HOH . D 4 HOH A 100 600 2 HOH HOH . D 4 HOH A 101 601 41 HOH HOH . D 4 HOH A 102 602 175 HOH HOH . D 4 HOH A 103 603 59 HOH HOH . D 4 HOH A 104 604 17 HOH HOH . D 4 HOH A 105 605 79 HOH HOH . D 4 HOH A 106 606 122 HOH HOH . D 4 HOH A 107 607 86 HOH HOH . D 4 HOH A 108 608 166 HOH HOH . D 4 HOH A 109 609 25 HOH HOH . D 4 HOH A 110 610 138 HOH HOH . D 4 HOH A 111 611 19 HOH HOH . D 4 HOH A 112 612 171 HOH HOH . D 4 HOH A 113 613 21 HOH HOH . D 4 HOH A 114 614 119 HOH HOH . D 4 HOH A 115 615 134 HOH HOH . D 4 HOH A 116 616 87 HOH HOH . D 4 HOH A 117 617 34 HOH HOH . D 4 HOH A 118 618 15 HOH HOH . D 4 HOH A 119 619 89 HOH HOH . D 4 HOH A 120 620 80 HOH HOH . D 4 HOH A 121 621 149 HOH HOH . D 4 HOH A 122 622 141 HOH HOH . D 4 HOH A 123 623 95 HOH HOH . D 4 HOH A 124 624 120 HOH HOH . D 4 HOH A 125 625 47 HOH HOH . D 4 HOH A 126 626 35 HOH HOH . D 4 HOH A 127 627 44 HOH HOH . D 4 HOH A 128 628 121 HOH HOH . D 4 HOH A 129 629 137 HOH HOH . D 4 HOH A 130 630 48 HOH HOH . D 4 HOH A 131 631 176 HOH HOH . D 4 HOH A 132 632 66 HOH HOH . D 4 HOH A 133 633 46 HOH HOH . D 4 HOH A 134 634 73 HOH HOH . D 4 HOH A 135 635 164 HOH HOH . D 4 HOH A 136 636 157 HOH HOH . D 4 HOH A 137 637 64 HOH HOH . D 4 HOH A 138 638 50 HOH HOH . D 4 HOH A 139 639 128 HOH HOH . D 4 HOH A 140 640 151 HOH HOH . D 4 HOH A 141 641 160 HOH HOH . D 4 HOH A 142 642 96 HOH HOH . D 4 HOH A 143 643 28 HOH HOH . D 4 HOH A 144 644 150 HOH HOH . D 4 HOH A 145 645 178 HOH HOH . D 4 HOH A 146 646 49 HOH HOH . D 4 HOH A 147 647 162 HOH HOH . D 4 HOH A 148 648 169 HOH HOH . D 4 HOH A 149 649 124 HOH HOH . D 4 HOH A 150 650 45 HOH HOH . D 4 HOH A 151 651 174 HOH HOH . D 4 HOH A 152 652 126 HOH HOH . D 4 HOH A 153 653 110 HOH HOH . D 4 HOH A 154 654 109 HOH HOH . D 4 HOH A 155 655 127 HOH HOH . D 4 HOH A 156 656 54 HOH HOH . D 4 HOH A 157 657 29 HOH HOH . D 4 HOH A 158 658 142 HOH HOH . D 4 HOH A 159 659 177 HOH HOH . D 4 HOH A 160 660 168 HOH HOH . D 4 HOH A 161 661 72 HOH HOH . D 4 HOH A 162 662 133 HOH HOH . D 4 HOH A 163 663 179 HOH HOH . D 4 HOH A 164 664 70 HOH HOH . D 4 HOH A 165 665 159 HOH HOH . D 4 HOH A 166 666 102 HOH HOH . D 4 HOH A 167 667 99 HOH HOH . D 4 HOH A 168 668 161 HOH HOH . D 4 HOH A 169 669 158 HOH HOH . D 4 HOH A 170 670 125 HOH HOH . D 4 HOH A 171 671 92 HOH HOH . D 4 HOH A 172 672 156 HOH HOH . D 4 HOH A 173 673 82 HOH HOH . D 4 HOH A 174 674 139 HOH HOH . D 4 HOH A 175 675 62 HOH HOH . D 4 HOH A 176 676 113 HOH HOH . D 4 HOH A 177 677 165 HOH HOH . D 4 HOH A 178 678 144 HOH HOH . D 4 HOH A 179 679 135 HOH HOH . D 4 HOH A 180 680 154 HOH HOH . D 4 HOH A 181 681 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 21.208 -40.871 -22.597 1 39.54 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 20.631 -39.807 -21.66 1 54.44 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 20.586 -40.77 -23.948 1 88.48 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 20.97 -42.245 -22.06 1 94.22 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 22.677 -40.669 -22.703 1 109.95 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 21.684 -38.932 -21.279 1 203.01 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 20.822 -39.443 -24.397 1 91.28 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 21.553 -42.173 -20.828 1 50.31 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 20.207 -40.29 -20.777 1 65.33 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 19.849 -39.249 -22.18 1 65.33 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 19.516 -40.973 -23.872 1 106.18 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 21.048 -41.498 -24.617 1 106.18 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 19.91 -42.483 -21.947 1 113.06 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 21.458 -43.025 -22.648 1 113.06 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 23.106 -40.766 -21.768 1 131.94 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 23.077 -41.376 -23.341 1 131.94 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 22.869 -39.724 -23.073 1 131.94 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 21.338 -38.251 -20.685 1 243.61 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 20.435 -39.327 -25.276 1 109.54 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 21.922 -41.289 -20.697 1 60.37 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #