data_5QER # _model_server_result.job_id UQcfLdJ8PYr9tSDMc8C7xQ _model_server_result.datetime_utc '2024-11-05 10:29:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QER # _exptl.entry_id 5QER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.297 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(4-methylphenyl)sulfanyl]pyridine-3-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QER _cell.length_a 89.723 _cell.length_b 89.723 _cell.length_c 106.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QER _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id CE2 _struct_conn.ptnr1_label_comp_id TYR _struct_conn.ptnr1_label_seq_id 152 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id TYR _struct_conn.ptnr1_auth_seq_id 152 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 295 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 295 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id C _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id C _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.266 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H11 N O2 S' _chem_comp.formula_weight 245.297 _chem_comp.id JL1 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(4-methylphenyl)sulfanyl]pyridine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 JL1 doub 173 n y C17 C02 JL1 sing 174 n y C16 C05 JL1 sing 175 n y O14 C13 JL1 doub 176 n n O15 C13 JL1 sing 177 n n C13 C12 JL1 sing 178 n n C12 C11 JL1 doub 179 n y C12 C07 JL1 sing 180 n y C02 C01 JL1 sing 181 n n C02 C03 JL1 doub 182 n y S06 C05 JL1 sing 183 n n S06 C07 JL1 sing 184 n n C05 C04 JL1 doub 185 n y C11 C10 JL1 sing 186 n y C07 N08 JL1 doub 187 n y C10 C09 JL1 doub 188 n y N08 C09 JL1 sing 189 n y C04 C03 JL1 sing 190 n y C10 H101 JL1 sing 191 n n C17 H171 JL1 sing 192 n n C01 H011 JL1 sing 193 n n C01 H012 JL1 sing 194 n n C01 H013 JL1 sing 195 n n C03 H031 JL1 sing 196 n n C04 H041 JL1 sing 197 n n C09 H091 JL1 sing 198 n n C11 H111 JL1 sing 199 n n O15 H1 JL1 sing 200 n n C16 H161 JL1 sing 201 n n # _atom_sites.entry_id 5QER _atom_sites.fract_transf_matrix[1][1] 0.011145 _atom_sites.fract_transf_matrix[1][2] 0.006435 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JL1 A 1 401 1 JL1 LIG . C 2 JL1 A 1 402 2 JL1 LIG . D 3 TRS A 1 403 500 TRS TRS . E 4 HOH A 1 501 101 HOH HOH . E 4 HOH A 2 502 63 HOH HOH . E 4 HOH A 3 503 162 HOH HOH . E 4 HOH A 4 504 31 HOH HOH . E 4 HOH A 5 505 168 HOH HOH . E 4 HOH A 6 506 189 HOH HOH . E 4 HOH A 7 507 104 HOH HOH . E 4 HOH A 8 508 183 HOH HOH . E 4 HOH A 9 509 173 HOH HOH . E 4 HOH A 10 510 146 HOH HOH . E 4 HOH A 11 511 184 HOH HOH . E 4 HOH A 12 512 174 HOH HOH . E 4 HOH A 13 513 170 HOH HOH . E 4 HOH A 14 514 120 HOH HOH . E 4 HOH A 15 515 125 HOH HOH . E 4 HOH A 16 516 79 HOH HOH . E 4 HOH A 17 517 181 HOH HOH . E 4 HOH A 18 518 177 HOH HOH . E 4 HOH A 19 519 105 HOH HOH . E 4 HOH A 20 520 67 HOH HOH . E 4 HOH A 21 521 85 HOH HOH . E 4 HOH A 22 522 152 HOH HOH . E 4 HOH A 23 523 22 HOH HOH . E 4 HOH A 24 524 57 HOH HOH . E 4 HOH A 25 525 130 HOH HOH . E 4 HOH A 26 526 133 HOH HOH . E 4 HOH A 27 527 149 HOH HOH . E 4 HOH A 28 528 157 HOH HOH . E 4 HOH A 29 529 58 HOH HOH . E 4 HOH A 30 530 8 HOH HOH . E 4 HOH A 31 531 95 HOH HOH . E 4 HOH A 32 532 122 HOH HOH . E 4 HOH A 33 533 43 HOH HOH . E 4 HOH A 34 534 20 HOH HOH . E 4 HOH A 35 535 83 HOH HOH . E 4 HOH A 36 536 26 HOH HOH . E 4 HOH A 37 537 143 HOH HOH . E 4 HOH A 38 538 123 HOH HOH . E 4 HOH A 39 539 56 HOH HOH . E 4 HOH A 40 540 92 HOH HOH . E 4 HOH A 41 541 109 HOH HOH . E 4 HOH A 42 542 18 HOH HOH . E 4 HOH A 43 543 111 HOH HOH . E 4 HOH A 44 544 25 HOH HOH . E 4 HOH A 45 545 61 HOH HOH . E 4 HOH A 46 546 37 HOH HOH . E 4 HOH A 47 547 39 HOH HOH . E 4 HOH A 48 548 73 HOH HOH . E 4 HOH A 49 549 172 HOH HOH . E 4 HOH A 50 550 4 HOH HOH . E 4 HOH A 51 551 53 HOH HOH . E 4 HOH A 52 552 131 HOH HOH . E 4 HOH A 53 553 1 HOH HOH . E 4 HOH A 54 554 108 HOH HOH . E 4 HOH A 55 555 12 HOH HOH . E 4 HOH A 56 556 142 HOH HOH . E 4 HOH A 57 557 5 HOH HOH . E 4 HOH A 58 558 139 HOH HOH . E 4 HOH A 59 559 13 HOH HOH . E 4 HOH A 60 560 42 HOH HOH . E 4 HOH A 61 561 160 HOH HOH . E 4 HOH A 62 562 11 HOH HOH . E 4 HOH A 63 563 75 HOH HOH . E 4 HOH A 64 564 27 HOH HOH . E 4 HOH A 65 565 16 HOH HOH . E 4 HOH A 66 566 116 HOH HOH . E 4 HOH A 67 567 187 HOH HOH . E 4 HOH A 68 568 3 HOH HOH . E 4 HOH A 69 569 45 HOH HOH . E 4 HOH A 70 570 32 HOH HOH . E 4 HOH A 71 571 41 HOH HOH . E 4 HOH A 72 572 28 HOH HOH . E 4 HOH A 73 573 87 HOH HOH . E 4 HOH A 74 574 115 HOH HOH . E 4 HOH A 75 575 99 HOH HOH . E 4 HOH A 76 576 93 HOH HOH . E 4 HOH A 77 577 44 HOH HOH . E 4 HOH A 78 578 102 HOH HOH . E 4 HOH A 79 579 6 HOH HOH . E 4 HOH A 80 580 69 HOH HOH . E 4 HOH A 81 581 72 HOH HOH . E 4 HOH A 82 582 90 HOH HOH . E 4 HOH A 83 583 91 HOH HOH . E 4 HOH A 84 584 24 HOH HOH . E 4 HOH A 85 585 10 HOH HOH . E 4 HOH A 86 586 60 HOH HOH . E 4 HOH A 87 587 66 HOH HOH . E 4 HOH A 88 588 9 HOH HOH . E 4 HOH A 89 589 7 HOH HOH . E 4 HOH A 90 590 161 HOH HOH . E 4 HOH A 91 591 14 HOH HOH . E 4 HOH A 92 592 97 HOH HOH . E 4 HOH A 93 593 2 HOH HOH . E 4 HOH A 94 594 86 HOH HOH . E 4 HOH A 95 595 164 HOH HOH . E 4 HOH A 96 596 59 HOH HOH . E 4 HOH A 97 597 40 HOH HOH . E 4 HOH A 98 598 94 HOH HOH . E 4 HOH A 99 599 124 HOH HOH . E 4 HOH A 100 600 182 HOH HOH . E 4 HOH A 101 601 154 HOH HOH . E 4 HOH A 102 602 17 HOH HOH . E 4 HOH A 103 603 52 HOH HOH . E 4 HOH A 104 604 23 HOH HOH . E 4 HOH A 105 605 167 HOH HOH . E 4 HOH A 106 606 48 HOH HOH . E 4 HOH A 107 607 21 HOH HOH . E 4 HOH A 108 608 33 HOH HOH . E 4 HOH A 109 609 55 HOH HOH . E 4 HOH A 110 610 100 HOH HOH . E 4 HOH A 111 611 169 HOH HOH . E 4 HOH A 112 612 19 HOH HOH . E 4 HOH A 113 613 175 HOH HOH . E 4 HOH A 114 614 165 HOH HOH . E 4 HOH A 115 615 74 HOH HOH . E 4 HOH A 116 616 88 HOH HOH . E 4 HOH A 117 617 49 HOH HOH . E 4 HOH A 118 618 153 HOH HOH . E 4 HOH A 119 619 36 HOH HOH . E 4 HOH A 120 620 163 HOH HOH . E 4 HOH A 121 621 144 HOH HOH . E 4 HOH A 122 622 51 HOH HOH . E 4 HOH A 123 623 141 HOH HOH . E 4 HOH A 124 624 38 HOH HOH . E 4 HOH A 125 625 150 HOH HOH . E 4 HOH A 126 626 47 HOH HOH . E 4 HOH A 127 627 64 HOH HOH . E 4 HOH A 128 628 127 HOH HOH . E 4 HOH A 129 629 103 HOH HOH . E 4 HOH A 130 630 15 HOH HOH . E 4 HOH A 131 631 107 HOH HOH . E 4 HOH A 132 632 82 HOH HOH . E 4 HOH A 133 633 156 HOH HOH . E 4 HOH A 134 634 71 HOH HOH . E 4 HOH A 135 635 34 HOH HOH . E 4 HOH A 136 636 35 HOH HOH . E 4 HOH A 137 637 112 HOH HOH . E 4 HOH A 138 638 77 HOH HOH . E 4 HOH A 139 639 155 HOH HOH . E 4 HOH A 140 640 117 HOH HOH . E 4 HOH A 141 641 78 HOH HOH . E 4 HOH A 142 642 96 HOH HOH . E 4 HOH A 143 643 134 HOH HOH . E 4 HOH A 144 644 80 HOH HOH . E 4 HOH A 145 645 29 HOH HOH . E 4 HOH A 146 646 190 HOH HOH . E 4 HOH A 147 647 50 HOH HOH . E 4 HOH A 148 648 46 HOH HOH . E 4 HOH A 149 649 65 HOH HOH . E 4 HOH A 150 650 188 HOH HOH . E 4 HOH A 151 651 176 HOH HOH . E 4 HOH A 152 652 178 HOH HOH . E 4 HOH A 153 653 76 HOH HOH . E 4 HOH A 154 654 137 HOH HOH . E 4 HOH A 155 655 129 HOH HOH . E 4 HOH A 156 656 98 HOH HOH . E 4 HOH A 157 657 132 HOH HOH . E 4 HOH A 158 658 159 HOH HOH . E 4 HOH A 159 659 179 HOH HOH . E 4 HOH A 160 660 128 HOH HOH . E 4 HOH A 161 661 191 HOH HOH . E 4 HOH A 162 662 126 HOH HOH . E 4 HOH A 163 663 148 HOH HOH . E 4 HOH A 164 664 147 HOH HOH . E 4 HOH A 165 665 54 HOH HOH . E 4 HOH A 166 666 113 HOH HOH . E 4 HOH A 167 667 140 HOH HOH . E 4 HOH A 168 668 186 HOH HOH . E 4 HOH A 169 669 145 HOH HOH . E 4 HOH A 170 670 30 HOH HOH . E 4 HOH A 171 671 192 HOH HOH . E 4 HOH A 172 672 158 HOH HOH . E 4 HOH A 173 673 70 HOH HOH . E 4 HOH A 174 674 68 HOH HOH . E 4 HOH A 175 675 106 HOH HOH . E 4 HOH A 176 676 166 HOH HOH . E 4 HOH A 177 677 185 HOH HOH . E 4 HOH A 178 678 180 HOH HOH . E 4 HOH A 179 679 171 HOH HOH . E 4 HOH A 180 680 119 HOH HOH . E 4 HOH A 181 681 114 HOH HOH . E 4 HOH A 182 682 81 HOH HOH . E 4 HOH A 183 683 151 HOH HOH . E 4 HOH A 184 684 62 HOH HOH . E 4 HOH A 185 685 89 HOH HOH . E 4 HOH A 186 686 135 HOH HOH . E 4 HOH A 187 687 121 HOH HOH . E 4 HOH A 188 688 110 HOH HOH . E 4 HOH A 189 689 118 HOH HOH . E 4 HOH A 190 690 84 HOH HOH . E 4 HOH A 191 691 138 HOH HOH . E 4 HOH A 192 692 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JL1 . D . C 2 -51.296 16.041 15.792 0.15 37.53 ? C10 JL1 402 A 1 HETATM 2 C C13 JL1 . D . C 2 -49.594 17.174 12.642 0.15 16.52 ? C13 JL1 402 A 1 HETATM 3 C C17 JL1 . D . C 2 -46 12.724 16.568 0.15 34.36 ? C17 JL1 402 A 1 HETATM 4 C C01 JL1 . D . C 2 -46.255 10.427 17.361 0.15 40.76 ? C01 JL1 402 A 1 HETATM 5 C C02 JL1 . D . C 2 -46.585 11.516 16.444 0.15 38.35 ? C02 JL1 402 A 1 HETATM 6 C C03 JL1 . D . C 2 -47.451 11.351 15.435 0.15 33.39 ? C03 JL1 402 A 1 HETATM 7 C C04 JL1 . D . C 2 -47.745 12.419 14.588 0.15 40.43 ? C04 JL1 402 A 1 HETATM 8 C C05 JL1 . D . C 2 -47.136 13.609 14.718 0.15 35.5 ? C05 JL1 402 A 1 HETATM 9 S S06 JL1 . D . C 2 -47.553 14.894 13.686 0.15 36.25 ? S06 JL1 402 A 1 HETATM 10 C C07 JL1 . D . C 2 -49.057 15.423 14.404 0.15 37.5 ? C07 JL1 402 A 1 HETATM 11 N N08 JL1 . D . C 2 -49.329 14.791 15.547 0.15 30.04 ? N08 JL1 402 A 1 HETATM 12 C C09 JL1 . D . C 2 -50.422 15.087 16.227 0.15 37.38 ? C09 JL1 402 A 1 HETATM 13 C C11 JL1 . D . C 2 -50.965 16.708 14.611 0.15 34.62 ? C11 JL1 402 A 1 HETATM 14 C C12 JL1 . D . C 2 -49.834 16.417 13.903 0.15 43.22 ? C12 JL1 402 A 1 HETATM 15 O O14 JL1 . D . C 2 -49.639 16.526 11.603 0.15 44.23 -1 O14 JL1 402 A 1 HETATM 16 O O15 JL1 . D . C 2 -49.394 18.362 12.706 0.15 34.83 ? O15 JL1 402 A 1 HETATM 17 C C16 JL1 . D . C 2 -46.309 13.771 15.732 0.15 28.81 ? C16 JL1 402 A 1 HETATM 18 H H101 JL1 . D . C 2 -52.196 16.272 16.356 0.15 45.03 ? H101 JL1 402 A 1 HETATM 19 H H171 JL1 . D . C 2 -45.313 12.899 17.394 0.15 41.23 ? H171 JL1 402 A 1 HETATM 20 H H011 JL1 . D . C 2 -45.511 10.696 18.126 0.15 48.91 ? H011 JL1 402 A 1 HETATM 21 H H012 JL1 . D . C 2 -45.836 9.541 16.862 0.15 48.91 ? H012 JL1 402 A 1 HETATM 22 H H013 JL1 . D . C 2 -47.121 10.054 17.927 0.15 48.91 ? H013 JL1 402 A 1 HETATM 23 H H031 JL1 . D . C 2 -47.928 10.384 15.273 0.15 40.06 ? H031 JL1 402 A 1 HETATM 24 H H041 JL1 . D . C 2 -48.508 12.273 13.821 0.15 48.52 ? H041 JL1 402 A 1 HETATM 25 H H091 JL1 . D . C 2 -50.624 14.531 17.143 0.15 44.85 ? H091 JL1 402 A 1 HETATM 26 H H111 JL1 . D . C 2 -51.599 17.494 14.201 0.15 41.54 ? H111 JL1 402 A 1 HETATM 27 H H161 JL1 . D . C 2 -45.878 14.753 15.919 0.15 34.57 ? H161 JL1 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #