data_5QF1 # _model_server_result.job_id NWlwCfvNfq_KJ5jDI5d5hg _model_server_result.datetime_utc '2024-10-18 04:30:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qf1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QF1 # _exptl.entry_id 5QF1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(2-hydroxyethyl)benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QF1 _cell.length_a 90.322 _cell.length_b 90.322 _cell.length_c 106.74 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H9 N O' _chem_comp.formula_weight 147.174 _chem_comp.id JMD _chem_comp.mon_nstd_flag . _chem_comp.name 4-(2-hydroxyethyl)benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C10 JMD trip 173 n n C06 C05 JMD doub 174 n y C06 C07 JMD sing 175 n y C10 C07 JMD sing 176 n n C05 C04 JMD sing 177 n y C07 C08 JMD doub 178 n y C04 C09 JMD doub 179 n y C04 C03 JMD sing 180 n n C08 C09 JMD sing 181 n y C02 O01 JMD sing 182 n n C02 C03 JMD sing 183 n n O01 H011 JMD sing 184 n n C02 H021 JMD sing 185 n n C02 H022 JMD sing 186 n n C03 H032 JMD sing 187 n n C03 H031 JMD sing 188 n n C05 H051 JMD sing 189 n n C06 H061 JMD sing 190 n n C08 H081 JMD sing 191 n n C09 H091 JMD sing 192 n n # _atom_sites.entry_id 5QF1 _atom_sites.fract_transf_matrix[1][1] 0.011071 _atom_sites.fract_transf_matrix[1][2] 0.006392 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JMD A 1 401 1 JMD LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 70 HOH HOH . D 4 HOH A 2 502 128 HOH HOH . D 4 HOH A 3 503 168 HOH HOH . D 4 HOH A 4 504 166 HOH HOH . D 4 HOH A 5 505 189 HOH HOH . D 4 HOH A 6 506 36 HOH HOH . D 4 HOH A 7 507 134 HOH HOH . D 4 HOH A 8 508 196 HOH HOH . D 4 HOH A 9 509 82 HOH HOH . D 4 HOH A 10 510 100 HOH HOH . D 4 HOH A 11 511 119 HOH HOH . D 4 HOH A 12 512 79 HOH HOH . D 4 HOH A 13 513 45 HOH HOH . D 4 HOH A 14 514 7 HOH HOH . D 4 HOH A 15 515 34 HOH HOH . D 4 HOH A 16 516 67 HOH HOH . D 4 HOH A 17 517 195 HOH HOH . D 4 HOH A 18 518 101 HOH HOH . D 4 HOH A 19 519 212 HOH HOH . D 4 HOH A 20 520 28 HOH HOH . D 4 HOH A 21 521 30 HOH HOH . D 4 HOH A 22 522 44 HOH HOH . D 4 HOH A 23 523 42 HOH HOH . D 4 HOH A 24 524 140 HOH HOH . D 4 HOH A 25 525 159 HOH HOH . D 4 HOH A 26 526 147 HOH HOH . D 4 HOH A 27 527 135 HOH HOH . D 4 HOH A 28 528 56 HOH HOH . D 4 HOH A 29 529 201 HOH HOH . D 4 HOH A 30 530 98 HOH HOH . D 4 HOH A 31 531 11 HOH HOH . D 4 HOH A 32 532 167 HOH HOH . D 4 HOH A 33 533 104 HOH HOH . D 4 HOH A 34 534 6 HOH HOH . D 4 HOH A 35 535 13 HOH HOH . D 4 HOH A 36 536 18 HOH HOH . D 4 HOH A 37 537 29 HOH HOH . D 4 HOH A 38 538 25 HOH HOH . D 4 HOH A 39 539 55 HOH HOH . D 4 HOH A 40 540 4 HOH HOH . D 4 HOH A 41 541 117 HOH HOH . D 4 HOH A 42 542 24 HOH HOH . D 4 HOH A 43 543 3 HOH HOH . D 4 HOH A 44 544 93 HOH HOH . D 4 HOH A 45 545 90 HOH HOH . D 4 HOH A 46 546 216 HOH HOH . D 4 HOH A 47 547 59 HOH HOH . D 4 HOH A 48 548 60 HOH HOH . D 4 HOH A 49 549 64 HOH HOH . D 4 HOH A 50 550 17 HOH HOH . D 4 HOH A 51 551 39 HOH HOH . D 4 HOH A 52 552 31 HOH HOH . D 4 HOH A 53 553 52 HOH HOH . D 4 HOH A 54 554 85 HOH HOH . D 4 HOH A 55 555 48 HOH HOH . D 4 HOH A 56 556 21 HOH HOH . D 4 HOH A 57 557 124 HOH HOH . D 4 HOH A 58 558 200 HOH HOH . D 4 HOH A 59 559 102 HOH HOH . D 4 HOH A 60 560 77 HOH HOH . D 4 HOH A 61 561 66 HOH HOH . D 4 HOH A 62 562 5 HOH HOH . D 4 HOH A 63 563 23 HOH HOH . D 4 HOH A 64 564 94 HOH HOH . D 4 HOH A 65 565 8 HOH HOH . D 4 HOH A 66 566 114 HOH HOH . D 4 HOH A 67 567 57 HOH HOH . D 4 HOH A 68 568 105 HOH HOH . D 4 HOH A 69 569 164 HOH HOH . D 4 HOH A 70 570 173 HOH HOH . D 4 HOH A 71 571 40 HOH HOH . D 4 HOH A 72 572 95 HOH HOH . D 4 HOH A 73 573 157 HOH HOH . D 4 HOH A 74 574 109 HOH HOH . D 4 HOH A 75 575 97 HOH HOH . D 4 HOH A 76 576 130 HOH HOH . D 4 HOH A 77 577 170 HOH HOH . D 4 HOH A 78 578 132 HOH HOH . D 4 HOH A 79 579 99 HOH HOH . D 4 HOH A 80 580 1 HOH HOH . D 4 HOH A 81 581 125 HOH HOH . D 4 HOH A 82 582 80 HOH HOH . D 4 HOH A 83 583 38 HOH HOH . D 4 HOH A 84 584 75 HOH HOH . D 4 HOH A 85 585 26 HOH HOH . D 4 HOH A 86 586 33 HOH HOH . D 4 HOH A 87 587 127 HOH HOH . D 4 HOH A 88 588 73 HOH HOH . D 4 HOH A 89 589 12 HOH HOH . D 4 HOH A 90 590 215 HOH HOH . D 4 HOH A 91 591 16 HOH HOH . D 4 HOH A 92 592 37 HOH HOH . D 4 HOH A 93 593 76 HOH HOH . D 4 HOH A 94 594 51 HOH HOH . D 4 HOH A 95 595 161 HOH HOH . D 4 HOH A 96 596 10 HOH HOH . D 4 HOH A 97 597 14 HOH HOH . D 4 HOH A 98 598 92 HOH HOH . D 4 HOH A 99 599 194 HOH HOH . D 4 HOH A 100 600 91 HOH HOH . D 4 HOH A 101 601 171 HOH HOH . D 4 HOH A 102 602 50 HOH HOH . D 4 HOH A 103 603 182 HOH HOH . D 4 HOH A 104 604 88 HOH HOH . D 4 HOH A 105 605 9 HOH HOH . D 4 HOH A 106 606 133 HOH HOH . D 4 HOH A 107 607 129 HOH HOH . D 4 HOH A 108 608 83 HOH HOH . D 4 HOH A 109 609 74 HOH HOH . D 4 HOH A 110 610 158 HOH HOH . D 4 HOH A 111 611 197 HOH HOH . D 4 HOH A 112 612 41 HOH HOH . D 4 HOH A 113 613 123 HOH HOH . D 4 HOH A 114 614 58 HOH HOH . D 4 HOH A 115 615 209 HOH HOH . D 4 HOH A 116 616 89 HOH HOH . D 4 HOH A 117 617 46 HOH HOH . D 4 HOH A 118 618 179 HOH HOH . D 4 HOH A 119 619 136 HOH HOH . D 4 HOH A 120 620 54 HOH HOH . D 4 HOH A 121 621 2 HOH HOH . D 4 HOH A 122 622 190 HOH HOH . D 4 HOH A 123 623 49 HOH HOH . D 4 HOH A 124 624 131 HOH HOH . D 4 HOH A 125 625 175 HOH HOH . D 4 HOH A 126 626 154 HOH HOH . D 4 HOH A 127 627 19 HOH HOH . D 4 HOH A 128 628 111 HOH HOH . D 4 HOH A 129 629 184 HOH HOH . D 4 HOH A 130 630 120 HOH HOH . D 4 HOH A 131 631 22 HOH HOH . D 4 HOH A 132 632 20 HOH HOH . D 4 HOH A 133 633 32 HOH HOH . D 4 HOH A 134 634 137 HOH HOH . D 4 HOH A 135 635 15 HOH HOH . D 4 HOH A 136 636 118 HOH HOH . D 4 HOH A 137 637 178 HOH HOH . D 4 HOH A 138 638 183 HOH HOH . D 4 HOH A 139 639 72 HOH HOH . D 4 HOH A 140 640 169 HOH HOH . D 4 HOH A 141 641 63 HOH HOH . D 4 HOH A 142 642 160 HOH HOH . D 4 HOH A 143 643 86 HOH HOH . D 4 HOH A 144 644 211 HOH HOH . D 4 HOH A 145 645 208 HOH HOH . D 4 HOH A 146 646 87 HOH HOH . D 4 HOH A 147 647 185 HOH HOH . D 4 HOH A 148 648 138 HOH HOH . D 4 HOH A 149 649 78 HOH HOH . D 4 HOH A 150 650 202 HOH HOH . D 4 HOH A 151 651 35 HOH HOH . D 4 HOH A 152 652 81 HOH HOH . D 4 HOH A 153 653 43 HOH HOH . D 4 HOH A 154 654 106 HOH HOH . D 4 HOH A 155 655 65 HOH HOH . D 4 HOH A 156 656 151 HOH HOH . D 4 HOH A 157 657 143 HOH HOH . D 4 HOH A 158 658 96 HOH HOH . D 4 HOH A 159 659 146 HOH HOH . D 4 HOH A 160 660 153 HOH HOH . D 4 HOH A 161 661 152 HOH HOH . D 4 HOH A 162 662 115 HOH HOH . D 4 HOH A 163 663 112 HOH HOH . D 4 HOH A 164 664 47 HOH HOH . D 4 HOH A 165 665 69 HOH HOH . D 4 HOH A 166 666 198 HOH HOH . D 4 HOH A 167 667 165 HOH HOH . D 4 HOH A 168 668 214 HOH HOH . D 4 HOH A 169 669 207 HOH HOH . D 4 HOH A 170 670 186 HOH HOH . D 4 HOH A 171 671 53 HOH HOH . D 4 HOH A 172 672 113 HOH HOH . D 4 HOH A 173 673 181 HOH HOH . D 4 HOH A 174 674 180 HOH HOH . D 4 HOH A 175 675 27 HOH HOH . D 4 HOH A 176 676 139 HOH HOH . D 4 HOH A 177 677 149 HOH HOH . D 4 HOH A 178 678 156 HOH HOH . D 4 HOH A 179 679 203 HOH HOH . D 4 HOH A 180 680 172 HOH HOH . D 4 HOH A 181 681 141 HOH HOH . D 4 HOH A 182 682 174 HOH HOH . D 4 HOH A 183 683 199 HOH HOH . D 4 HOH A 184 684 206 HOH HOH . D 4 HOH A 185 685 163 HOH HOH . D 4 HOH A 186 686 122 HOH HOH . D 4 HOH A 187 687 107 HOH HOH . D 4 HOH A 188 688 71 HOH HOH . D 4 HOH A 189 689 108 HOH HOH . D 4 HOH A 190 690 68 HOH HOH . D 4 HOH A 191 691 103 HOH HOH . D 4 HOH A 192 692 213 HOH HOH . D 4 HOH A 193 693 121 HOH HOH . D 4 HOH A 194 694 177 HOH HOH . D 4 HOH A 195 695 145 HOH HOH . D 4 HOH A 196 696 61 HOH HOH . D 4 HOH A 197 697 84 HOH HOH . D 4 HOH A 198 698 116 HOH HOH . D 4 HOH A 199 699 144 HOH HOH . D 4 HOH A 200 700 204 HOH HOH . D 4 HOH A 201 701 150 HOH HOH . D 4 HOH A 202 702 126 HOH HOH . D 4 HOH A 203 703 110 HOH HOH . D 4 HOH A 204 704 191 HOH HOH . D 4 HOH A 205 705 192 HOH HOH . D 4 HOH A 206 706 148 HOH HOH . D 4 HOH A 207 707 210 HOH HOH . D 4 HOH A 208 708 193 HOH HOH . D 4 HOH A 209 709 176 HOH HOH . D 4 HOH A 210 710 155 HOH HOH . D 4 HOH A 211 711 62 HOH HOH . D 4 HOH A 212 712 142 HOH HOH . D 4 HOH A 213 713 205 HOH HOH . D 4 HOH A 214 714 188 HOH HOH . D 4 HOH A 215 715 187 HOH HOH . D 4 HOH A 216 716 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JMD . C . B 2 25.353 -25.559 -26.372 0.2 23.8 ? C10 JMD 401 A 1 HETATM 2 C C10 JMD . D . B 2 25.353 -25.559 -26.372 0.2 23.8 ? C10 JMD 401 A 1 HETATM 3 O O01 JMD . C . B 2 18.859 -22.712 -23.987 0.2 63.46 ? O01 JMD 401 A 1 HETATM 4 O O01 JMD . D . B 2 18.859 -22.712 -23.987 0.2 63.46 ? O01 JMD 401 A 1 HETATM 5 C C02 JMD . C . B 2 19.866 -23.481 -24.224 0.2 40.72 ? C02 JMD 401 A 1 HETATM 6 C C02 JMD . D . B 2 19.866 -23.481 -24.224 0.2 40.72 ? C02 JMD 401 A 1 HETATM 7 C C03 JMD . C . B 2 21.218 -22.823 -23.862 0.2 29.04 ? C03 JMD 401 A 1 HETATM 8 C C03 JMD . D . B 2 21.218 -22.823 -23.862 0.2 29.04 ? C03 JMD 401 A 1 HETATM 9 C C04 JMD . C . B 2 22.395 -23.587 -24.535 0.2 30.32 ? C04 JMD 401 A 1 HETATM 10 C C04 JMD . D . B 2 22.395 -23.587 -24.535 0.2 30.32 ? C04 JMD 401 A 1 HETATM 11 C C05 JMD . C . B 2 22.703 -23.343 -25.791 0.2 30.19 ? C05 JMD 401 A 1 HETATM 12 C C05 JMD . D . B 2 22.703 -23.343 -25.791 0.2 30.19 ? C05 JMD 401 A 1 HETATM 13 C C06 JMD . C . B 2 23.622 -23.931 -26.412 0.2 29.35 ? C06 JMD 401 A 1 HETATM 14 C C06 JMD . D . B 2 23.622 -23.931 -26.412 0.2 29.35 ? C06 JMD 401 A 1 HETATM 15 C C07 JMD . C . B 2 24.385 -24.942 -25.736 0.2 21.08 ? C07 JMD 401 A 1 HETATM 16 C C07 JMD . D . B 2 24.385 -24.942 -25.736 0.2 21.08 ? C07 JMD 401 A 1 HETATM 17 C C08 JMD . C . B 2 24.069 -25.201 -24.444 0.2 29.13 ? C08 JMD 401 A 1 HETATM 18 C C08 JMD . D . B 2 24.069 -25.201 -24.444 0.2 29.13 ? C08 JMD 401 A 1 HETATM 19 C C09 JMD . C . B 2 23.099 -24.535 -23.885 0.2 31.17 ? C09 JMD 401 A 1 HETATM 20 C C09 JMD . D . B 2 23.099 -24.535 -23.885 0.2 31.17 ? C09 JMD 401 A 1 HETATM 21 N N11 JMD . C . B 2 26.161 -26.052 -26.939 0.2 20.31 ? N11 JMD 401 A 1 HETATM 22 N N11 JMD . D . B 2 26.161 -26.052 -26.939 0.2 20.31 ? N11 JMD 401 A 1 HETATM 23 H H011 JMD . C . B 2 19.174 -21.885 -23.632 0.2 76.16 ? H011 JMD 401 A 1 HETATM 24 H H011 JMD . D . B 2 19.174 -21.885 -23.632 0.2 76.16 ? H011 JMD 401 A 1 HETATM 25 H H021 JMD . C . B 2 19.907 -23.747 -25.301 0.2 48.86 ? H021 JMD 401 A 1 HETATM 26 H H021 JMD . D . B 2 19.907 -23.747 -25.301 0.2 48.86 ? H021 JMD 401 A 1 HETATM 27 H H022 JMD . C . B 2 19.845 -24.429 -23.666 0.2 48.86 ? H022 JMD 401 A 1 HETATM 28 H H022 JMD . D . B 2 19.845 -24.429 -23.666 0.2 48.86 ? H022 JMD 401 A 1 HETATM 29 H H032 JMD . C . B 2 21.384 -21.773 -24.144 0.2 34.85 ? H032 JMD 401 A 1 HETATM 30 H H032 JMD . D . B 2 21.384 -21.773 -24.144 0.2 34.85 ? H032 JMD 401 A 1 HETATM 31 H H031 JMD . C . B 2 21.229 -22.91 -22.766 0.2 34.85 ? H031 JMD 401 A 1 HETATM 32 H H031 JMD . D . B 2 21.229 -22.91 -22.766 0.2 34.85 ? H031 JMD 401 A 1 HETATM 33 H H051 JMD . C . B 2 22.145 -22.599 -26.333 0.2 36.23 ? H051 JMD 401 A 1 HETATM 34 H H051 JMD . D . B 2 22.145 -22.599 -26.333 0.2 36.23 ? H051 JMD 401 A 1 HETATM 35 H H061 JMD . C . B 2 23.779 -23.633 -27.427 0.2 35.22 ? H061 JMD 401 A 1 HETATM 36 H H061 JMD . D . B 2 23.779 -23.633 -27.427 0.2 35.22 ? H061 JMD 401 A 1 HETATM 37 H H081 JMD . C . B 2 24.579 -25.915 -23.865 0.2 34.95 ? H081 JMD 401 A 1 HETATM 38 H H081 JMD . D . B 2 24.579 -25.915 -23.865 0.2 34.95 ? H081 JMD 401 A 1 HETATM 39 H H091 JMD . C . B 2 22.799 -24.694 -22.881 0.2 37.41 ? H091 JMD 401 A 1 HETATM 40 H H091 JMD . D . B 2 22.799 -24.694 -22.881 0.2 37.41 ? H091 JMD 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #