data_5QF6 # _model_server_result.job_id IEuUa-7HPk1AFWrB5L9G0A _model_server_result.datetime_utc '2025-07-08 04:23:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QF6 # _exptl.entry_id 5QF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QF6 _cell.length_a 89.439 _cell.length_b 89.439 _cell.length_c 106.241 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 353 n n C C2 TRS sing 354 n n C C3 TRS sing 355 n n C N TRS sing 356 n n C1 O1 TRS sing 357 n n C1 H11 TRS sing 358 n n C1 H12 TRS sing 359 n n C2 O2 TRS sing 360 n n C2 H21 TRS sing 361 n n C2 H22 TRS sing 362 n n C3 O3 TRS sing 363 n n C3 H31 TRS sing 364 n n C3 H32 TRS sing 365 n n N HN1 TRS sing 366 n n N HN2 TRS sing 367 n n N HN3 TRS sing 368 n n O1 HO1 TRS sing 369 n n O2 HO2 TRS sing 370 n n O3 HO3 TRS sing 371 n n # _atom_sites.entry_id 5QF6 _atom_sites.fract_transf_matrix[1][1] 0.011181 _atom_sites.fract_transf_matrix[1][2] 0.006455 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JNY A 1 401 1 JNY LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 196 HOH HOH . D 4 HOH A 2 502 208 HOH HOH . D 4 HOH A 3 503 227 HOH HOH . D 4 HOH A 4 504 71 HOH HOH . D 4 HOH A 5 505 76 HOH HOH . D 4 HOH A 6 506 168 HOH HOH . D 4 HOH A 7 507 183 HOH HOH . D 4 HOH A 8 508 135 HOH HOH . D 4 HOH A 9 509 205 HOH HOH . D 4 HOH A 10 510 107 HOH HOH . D 4 HOH A 11 511 93 HOH HOH . D 4 HOH A 12 512 203 HOH HOH . D 4 HOH A 13 513 134 HOH HOH . D 4 HOH A 14 514 24 HOH HOH . D 4 HOH A 15 515 145 HOH HOH . D 4 HOH A 16 516 125 HOH HOH . D 4 HOH A 17 517 143 HOH HOH . D 4 HOH A 18 518 61 HOH HOH . D 4 HOH A 19 519 11 HOH HOH . D 4 HOH A 20 520 64 HOH HOH . D 4 HOH A 21 521 130 HOH HOH . D 4 HOH A 22 522 117 HOH HOH . D 4 HOH A 23 523 81 HOH HOH . D 4 HOH A 24 524 139 HOH HOH . D 4 HOH A 25 525 181 HOH HOH . D 4 HOH A 26 526 35 HOH HOH . D 4 HOH A 27 527 190 HOH HOH . D 4 HOH A 28 528 92 HOH HOH . D 4 HOH A 29 529 206 HOH HOH . D 4 HOH A 30 530 18 HOH HOH . D 4 HOH A 31 531 105 HOH HOH . D 4 HOH A 32 532 111 HOH HOH . D 4 HOH A 33 533 34 HOH HOH . D 4 HOH A 34 534 84 HOH HOH . D 4 HOH A 35 535 86 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 221 HOH HOH . D 4 HOH A 38 538 118 HOH HOH . D 4 HOH A 39 539 28 HOH HOH . D 4 HOH A 40 540 51 HOH HOH . D 4 HOH A 41 541 213 HOH HOH . D 4 HOH A 42 542 1 HOH HOH . D 4 HOH A 43 543 77 HOH HOH . D 4 HOH A 44 544 25 HOH HOH . D 4 HOH A 45 545 165 HOH HOH . D 4 HOH A 46 546 100 HOH HOH . D 4 HOH A 47 547 116 HOH HOH . D 4 HOH A 48 548 39 HOH HOH . D 4 HOH A 49 549 131 HOH HOH . D 4 HOH A 50 550 13 HOH HOH . D 4 HOH A 51 551 50 HOH HOH . D 4 HOH A 52 552 225 HOH HOH . D 4 HOH A 53 553 69 HOH HOH . D 4 HOH A 54 554 140 HOH HOH . D 4 HOH A 55 555 33 HOH HOH . D 4 HOH A 56 556 147 HOH HOH . D 4 HOH A 57 557 68 HOH HOH . D 4 HOH A 58 558 85 HOH HOH . D 4 HOH A 59 559 90 HOH HOH . D 4 HOH A 60 560 106 HOH HOH . D 4 HOH A 61 561 97 HOH HOH . D 4 HOH A 62 562 9 HOH HOH . D 4 HOH A 63 563 52 HOH HOH . D 4 HOH A 64 564 4 HOH HOH . D 4 HOH A 65 565 60 HOH HOH . D 4 HOH A 66 566 12 HOH HOH . D 4 HOH A 67 567 5 HOH HOH . D 4 HOH A 68 568 16 HOH HOH . D 4 HOH A 69 569 14 HOH HOH . D 4 HOH A 70 570 56 HOH HOH . D 4 HOH A 71 571 164 HOH HOH . D 4 HOH A 72 572 23 HOH HOH . D 4 HOH A 73 573 87 HOH HOH . D 4 HOH A 74 574 48 HOH HOH . D 4 HOH A 75 575 53 HOH HOH . D 4 HOH A 76 576 156 HOH HOH . D 4 HOH A 77 577 124 HOH HOH . D 4 HOH A 78 578 37 HOH HOH . D 4 HOH A 79 579 22 HOH HOH . D 4 HOH A 80 580 238 HOH HOH . D 4 HOH A 81 581 98 HOH HOH . D 4 HOH A 82 582 29 HOH HOH . D 4 HOH A 83 583 3 HOH HOH . D 4 HOH A 84 584 8 HOH HOH . D 4 HOH A 85 585 47 HOH HOH . D 4 HOH A 86 586 173 HOH HOH . D 4 HOH A 87 587 6 HOH HOH . D 4 HOH A 88 588 38 HOH HOH . D 4 HOH A 89 589 175 HOH HOH . D 4 HOH A 90 590 101 HOH HOH . D 4 HOH A 91 591 209 HOH HOH . D 4 HOH A 92 592 2 HOH HOH . D 4 HOH A 93 593 126 HOH HOH . D 4 HOH A 94 594 46 HOH HOH . D 4 HOH A 95 595 152 HOH HOH . D 4 HOH A 96 596 10 HOH HOH . D 4 HOH A 97 597 17 HOH HOH . D 4 HOH A 98 598 115 HOH HOH . D 4 HOH A 99 599 73 HOH HOH . D 4 HOH A 100 600 88 HOH HOH . D 4 HOH A 101 601 133 HOH HOH . D 4 HOH A 102 602 54 HOH HOH . D 4 HOH A 103 603 198 HOH HOH . D 4 HOH A 104 604 67 HOH HOH . D 4 HOH A 105 605 32 HOH HOH . D 4 HOH A 106 606 7 HOH HOH . D 4 HOH A 107 607 158 HOH HOH . D 4 HOH A 108 608 26 HOH HOH . D 4 HOH A 109 609 141 HOH HOH . D 4 HOH A 110 610 128 HOH HOH . D 4 HOH A 111 611 70 HOH HOH . D 4 HOH A 112 612 119 HOH HOH . D 4 HOH A 113 613 89 HOH HOH . D 4 HOH A 114 614 19 HOH HOH . D 4 HOH A 115 615 142 HOH HOH . D 4 HOH A 116 616 113 HOH HOH . D 4 HOH A 117 617 132 HOH HOH . D 4 HOH A 118 618 222 HOH HOH . D 4 HOH A 119 619 40 HOH HOH . D 4 HOH A 120 620 194 HOH HOH . D 4 HOH A 121 621 49 HOH HOH . D 4 HOH A 122 622 138 HOH HOH . D 4 HOH A 123 623 30 HOH HOH . D 4 HOH A 124 624 83 HOH HOH . D 4 HOH A 125 625 80 HOH HOH . D 4 HOH A 126 626 184 HOH HOH . D 4 HOH A 127 627 162 HOH HOH . D 4 HOH A 128 628 159 HOH HOH . D 4 HOH A 129 629 41 HOH HOH . D 4 HOH A 130 630 235 HOH HOH . D 4 HOH A 131 631 20 HOH HOH . D 4 HOH A 132 632 21 HOH HOH . D 4 HOH A 133 633 96 HOH HOH . D 4 HOH A 134 634 108 HOH HOH . D 4 HOH A 135 635 136 HOH HOH . D 4 HOH A 136 636 31 HOH HOH . D 4 HOH A 137 637 112 HOH HOH . D 4 HOH A 138 638 129 HOH HOH . D 4 HOH A 139 639 148 HOH HOH . D 4 HOH A 140 640 94 HOH HOH . D 4 HOH A 141 641 74 HOH HOH . D 4 HOH A 142 642 137 HOH HOH . D 4 HOH A 143 643 15 HOH HOH . D 4 HOH A 144 644 63 HOH HOH . D 4 HOH A 145 645 45 HOH HOH . D 4 HOH A 146 646 43 HOH HOH . D 4 HOH A 147 647 75 HOH HOH . D 4 HOH A 148 648 193 HOH HOH . D 4 HOH A 149 649 163 HOH HOH . D 4 HOH A 150 650 176 HOH HOH . D 4 HOH A 151 651 42 HOH HOH . D 4 HOH A 152 652 104 HOH HOH . D 4 HOH A 153 653 237 HOH HOH . D 4 HOH A 154 654 179 HOH HOH . D 4 HOH A 155 655 91 HOH HOH . D 4 HOH A 156 656 157 HOH HOH . D 4 HOH A 157 657 187 HOH HOH . D 4 HOH A 158 658 66 HOH HOH . D 4 HOH A 159 659 166 HOH HOH . D 4 HOH A 160 660 99 HOH HOH . D 4 HOH A 161 661 72 HOH HOH . D 4 HOH A 162 662 120 HOH HOH . D 4 HOH A 163 663 188 HOH HOH . D 4 HOH A 164 664 58 HOH HOH . D 4 HOH A 165 665 161 HOH HOH . D 4 HOH A 166 666 240 HOH HOH . D 4 HOH A 167 667 233 HOH HOH . D 4 HOH A 168 668 121 HOH HOH . D 4 HOH A 169 669 55 HOH HOH . D 4 HOH A 170 670 44 HOH HOH . D 4 HOH A 171 671 154 HOH HOH . D 4 HOH A 172 672 78 HOH HOH . D 4 HOH A 173 673 180 HOH HOH . D 4 HOH A 174 674 102 HOH HOH . D 4 HOH A 175 675 197 HOH HOH . D 4 HOH A 176 676 172 HOH HOH . D 4 HOH A 177 677 95 HOH HOH . D 4 HOH A 178 678 160 HOH HOH . D 4 HOH A 179 679 146 HOH HOH . D 4 HOH A 180 680 59 HOH HOH . D 4 HOH A 181 681 144 HOH HOH . D 4 HOH A 182 682 114 HOH HOH . D 4 HOH A 183 683 155 HOH HOH . D 4 HOH A 184 684 212 HOH HOH . D 4 HOH A 185 685 210 HOH HOH . D 4 HOH A 186 686 234 HOH HOH . D 4 HOH A 187 687 151 HOH HOH . D 4 HOH A 188 688 122 HOH HOH . D 4 HOH A 189 689 232 HOH HOH . D 4 HOH A 190 690 149 HOH HOH . D 4 HOH A 191 691 178 HOH HOH . D 4 HOH A 192 692 211 HOH HOH . D 4 HOH A 193 693 171 HOH HOH . D 4 HOH A 194 694 62 HOH HOH . D 4 HOH A 195 695 204 HOH HOH . D 4 HOH A 196 696 27 HOH HOH . D 4 HOH A 197 697 109 HOH HOH . D 4 HOH A 198 698 226 HOH HOH . D 4 HOH A 199 699 215 HOH HOH . D 4 HOH A 200 700 65 HOH HOH . D 4 HOH A 201 701 182 HOH HOH . D 4 HOH A 202 702 167 HOH HOH . D 4 HOH A 203 703 214 HOH HOH . D 4 HOH A 204 704 174 HOH HOH . D 4 HOH A 205 705 186 HOH HOH . D 4 HOH A 206 706 103 HOH HOH . D 4 HOH A 207 707 191 HOH HOH . D 4 HOH A 208 708 216 HOH HOH . D 4 HOH A 209 709 207 HOH HOH . D 4 HOH A 210 710 169 HOH HOH . D 4 HOH A 211 711 195 HOH HOH . D 4 HOH A 212 712 231 HOH HOH . D 4 HOH A 213 713 189 HOH HOH . D 4 HOH A 214 714 79 HOH HOH . D 4 HOH A 215 715 217 HOH HOH . D 4 HOH A 216 716 202 HOH HOH . D 4 HOH A 217 717 236 HOH HOH . D 4 HOH A 218 718 229 HOH HOH . D 4 HOH A 219 719 177 HOH HOH . D 4 HOH A 220 720 57 HOH HOH . D 4 HOH A 221 721 110 HOH HOH . D 4 HOH A 222 722 170 HOH HOH . D 4 HOH A 223 723 185 HOH HOH . D 4 HOH A 224 724 192 HOH HOH . D 4 HOH A 225 725 218 HOH HOH . D 4 HOH A 226 726 199 HOH HOH . D 4 HOH A 227 727 224 HOH HOH . D 4 HOH A 228 728 220 HOH HOH . D 4 HOH A 229 729 82 HOH HOH . D 4 HOH A 230 730 123 HOH HOH . D 4 HOH A 231 731 153 HOH HOH . D 4 HOH A 232 732 201 HOH HOH . D 4 HOH A 233 733 239 HOH HOH . D 4 HOH A 234 734 230 HOH HOH . D 4 HOH A 235 735 200 HOH HOH . D 4 HOH A 236 736 243 HOH HOH . D 4 HOH A 237 737 244 HOH HOH . D 4 HOH A 238 738 150 HOH HOH . D 4 HOH A 239 739 228 HOH HOH . D 4 HOH A 240 740 219 HOH HOH . D 4 HOH A 241 741 127 HOH HOH . D 4 HOH A 242 742 242 HOH HOH . D 4 HOH A 243 743 241 HOH HOH . D 4 HOH A 244 744 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 21.053 -40.736 -22.5 1 46.02 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 20.503 -39.661 -21.571 1 51.26 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 20.424 -40.641 -23.863 1 88.51 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 20.82 -42.108 -21.933 1 99.81 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 22.509 -40.519 -22.612 1 91.04 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 21.566 -38.791 -21.218 1 65.83 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 20.697 -39.359 -24.373 1 58.22 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 21.403 -42.105 -20.696 1 35.29 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 20.09 -40.129 -20.675 1 61.52 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 19.718 -39.102 -22.085 1 61.52 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 19.346 -40.794 -23.778 1 106.21 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 20.85 -41.407 -24.515 1 106.21 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 19.754 -42.319 -21.832 1 119.77 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 21.286 -42.877 -22.553 1 119.77 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 22.941 -40.593 -21.677 1 109.25 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 22.917 -41.234 -23.237 1 109.25 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 22.689 -39.579 -23.001 1 109.25 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 21.235 -38.1 -20.628 1 78.99 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 20.303 -39.27 -25.252 1 69.86 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 21.798 -41.239 -20.528 1 42.34 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #