data_5QFJ
#
_model_server_result.job_id            GlfqSY_ogMVWZL3DDIG1zw 
_model_server_result.datetime_utc      '2025-07-08 02:07:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qfj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5QFJ 
#
_exptl.entry_id    5QFJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5QFJ 
_cell.length_a            90.451 
_cell.length_b            90.451 
_cell.length_c            107.302 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QFJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 350 n n 
C C2 TRS sing 351 n n 
C C3 TRS sing 352 n n 
C N TRS sing 353 n n 
C1 O1 TRS sing 354 n n 
C1 H11 TRS sing 355 n n 
C1 H12 TRS sing 356 n n 
C2 O2 TRS sing 357 n n 
C2 H21 TRS sing 358 n n 
C2 H22 TRS sing 359 n n 
C3 O3 TRS sing 360 n n 
C3 H31 TRS sing 361 n n 
C3 H32 TRS sing 362 n n 
N HN1 TRS sing 363 n n 
N HN2 TRS sing 364 n n 
N HN3 TRS sing 365 n n 
O1 HO1 TRS sing 366 n n 
O2 HO2 TRS sing 367 n n 
O3 HO3 TRS sing 368 n n 
#
_atom_sites.entry_id                     5QFJ 
_atom_sites.fract_transf_matrix[1][1]    0.011056 
_atom_sites.fract_transf_matrix[1][2]    0.006383 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012766 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009319 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TRS A 1 401 500 TRS TRS . 
C 3 JOJ A 1 402 1 JOJ LIG . 
D 4 HOH A 1 501 678 HOH HOH . 
D 4 HOH A 2 502 696 HOH HOH . 
D 4 HOH A 3 503 419 HOH HOH . 
D 4 HOH A 4 504 664 HOH HOH . 
D 4 HOH A 5 505 632 HOH HOH . 
D 4 HOH A 6 506 605 HOH HOH . 
D 4 HOH A 7 507 465 HOH HOH . 
D 4 HOH A 8 508 470 HOH HOH . 
D 4 HOH A 9 509 421 HOH HOH . 
D 4 HOH A 10 510 677 HOH HOH . 
D 4 HOH A 11 511 634 HOH HOH . 
D 4 HOH A 12 512 482 HOH HOH . 
D 4 HOH A 13 513 673 HOH HOH . 
D 4 HOH A 14 514 569 HOH HOH . 
D 4 HOH A 15 515 524 HOH HOH . 
D 4 HOH A 16 516 679 HOH HOH . 
D 4 HOH A 17 517 517 HOH HOH . 
D 4 HOH A 18 518 464 HOH HOH . 
D 4 HOH A 19 519 423 HOH HOH . 
D 4 HOH A 20 520 688 HOH HOH . 
D 4 HOH A 21 521 414 HOH HOH . 
D 4 HOH A 22 522 501 HOH HOH . 
D 4 HOH A 23 523 434 HOH HOH . 
D 4 HOH A 24 524 693 HOH HOH . 
D 4 HOH A 25 525 448 HOH HOH . 
D 4 HOH A 26 526 658 HOH HOH . 
D 4 HOH A 27 527 412 HOH HOH . 
D 4 HOH A 28 528 577 HOH HOH . 
D 4 HOH A 29 529 627 HOH HOH . 
D 4 HOH A 30 530 698 HOH HOH . 
D 4 HOH A 31 531 460 HOH HOH . 
D 4 HOH A 32 532 589 HOH HOH . 
D 4 HOH A 33 533 427 HOH HOH . 
D 4 HOH A 34 534 536 HOH HOH . 
D 4 HOH A 35 535 431 HOH HOH . 
D 4 HOH A 36 536 405 HOH HOH . 
D 4 HOH A 37 537 461 HOH HOH . 
D 4 HOH A 38 538 409 HOH HOH . 
D 4 HOH A 39 539 404 HOH HOH . 
D 4 HOH A 40 540 522 HOH HOH . 
D 4 HOH A 41 541 411 HOH HOH . 
D 4 HOH A 42 542 666 HOH HOH . 
D 4 HOH A 43 543 628 HOH HOH . 
D 4 HOH A 44 544 602 HOH HOH . 
D 4 HOH A 45 545 566 HOH HOH . 
D 4 HOH A 46 546 509 HOH HOH . 
D 4 HOH A 47 547 491 HOH HOH . 
D 4 HOH A 48 548 406 HOH HOH . 
D 4 HOH A 49 549 449 HOH HOH . 
D 4 HOH A 50 550 441 HOH HOH . 
D 4 HOH A 51 551 407 HOH HOH . 
D 4 HOH A 52 552 540 HOH HOH . 
D 4 HOH A 53 553 481 HOH HOH . 
D 4 HOH A 54 554 408 HOH HOH . 
D 4 HOH A 55 555 611 HOH HOH . 
D 4 HOH A 56 556 402 HOH HOH . 
D 4 HOH A 57 557 669 HOH HOH . 
D 4 HOH A 58 558 426 HOH HOH . 
D 4 HOH A 59 559 429 HOH HOH . 
D 4 HOH A 60 560 466 HOH HOH . 
D 4 HOH A 61 561 486 HOH HOH . 
D 4 HOH A 62 562 554 HOH HOH . 
D 4 HOH A 63 563 459 HOH HOH . 
D 4 HOH A 64 564 435 HOH HOH . 
D 4 HOH A 65 565 619 HOH HOH . 
D 4 HOH A 66 566 440 HOH HOH . 
D 4 HOH A 67 567 430 HOH HOH . 
D 4 HOH A 68 568 631 HOH HOH . 
D 4 HOH A 69 569 587 HOH HOH . 
D 4 HOH A 70 570 450 HOH HOH . 
D 4 HOH A 71 571 452 HOH HOH . 
D 4 HOH A 72 572 533 HOH HOH . 
D 4 HOH A 73 573 704 HOH HOH . 
D 4 HOH A 74 574 683 HOH HOH . 
D 4 HOH A 75 575 479 HOH HOH . 
D 4 HOH A 76 576 446 HOH HOH . 
D 4 HOH A 77 577 497 HOH HOH . 
D 4 HOH A 78 578 463 HOH HOH . 
D 4 HOH A 79 579 528 HOH HOH . 
D 4 HOH A 80 580 576 HOH HOH . 
D 4 HOH A 81 581 590 HOH HOH . 
D 4 HOH A 82 582 415 HOH HOH . 
D 4 HOH A 83 583 575 HOH HOH . 
D 4 HOH A 84 584 417 HOH HOH . 
D 4 HOH A 85 585 451 HOH HOH . 
D 4 HOH A 86 586 616 HOH HOH . 
D 4 HOH A 87 587 493 HOH HOH . 
D 4 HOH A 88 588 439 HOH HOH . 
D 4 HOH A 89 589 468 HOH HOH . 
D 4 HOH A 90 590 700 HOH HOH . 
D 4 HOH A 91 591 672 HOH HOH . 
D 4 HOH A 92 592 556 HOH HOH . 
D 4 HOH A 93 593 553 HOH HOH . 
D 4 HOH A 94 594 580 HOH HOH . 
D 4 HOH A 95 595 403 HOH HOH . 
D 4 HOH A 96 596 437 HOH HOH . 
D 4 HOH A 97 597 530 HOH HOH . 
D 4 HOH A 98 598 413 HOH HOH . 
D 4 HOH A 99 599 467 HOH HOH . 
D 4 HOH A 100 600 633 HOH HOH . 
D 4 HOH A 101 601 689 HOH HOH . 
D 4 HOH A 102 602 410 HOH HOH . 
D 4 HOH A 103 603 424 HOH HOH . 
D 4 HOH A 104 604 625 HOH HOH . 
D 4 HOH A 105 605 436 HOH HOH . 
D 4 HOH A 106 606 416 HOH HOH . 
D 4 HOH A 107 607 444 HOH HOH . 
D 4 HOH A 108 608 504 HOH HOH . 
D 4 HOH A 109 609 559 HOH HOH . 
D 4 HOH A 110 610 447 HOH HOH . 
D 4 HOH A 111 611 484 HOH HOH . 
D 4 HOH A 112 612 692 HOH HOH . 
D 4 HOH A 113 613 561 HOH HOH . 
D 4 HOH A 114 614 418 HOH HOH . 
D 4 HOH A 115 615 503 HOH HOH . 
D 4 HOH A 116 616 539 HOH HOH . 
D 4 HOH A 117 617 549 HOH HOH . 
D 4 HOH A 118 618 526 HOH HOH . 
D 4 HOH A 119 619 443 HOH HOH . 
D 4 HOH A 120 620 535 HOH HOH . 
D 4 HOH A 121 621 562 HOH HOH . 
D 4 HOH A 122 622 660 HOH HOH . 
D 4 HOH A 123 623 477 HOH HOH . 
D 4 HOH A 124 624 506 HOH HOH . 
D 4 HOH A 125 625 563 HOH HOH . 
D 4 HOH A 126 626 474 HOH HOH . 
D 4 HOH A 127 627 420 HOH HOH . 
D 4 HOH A 128 628 475 HOH HOH . 
D 4 HOH A 129 629 489 HOH HOH . 
D 4 HOH A 130 630 699 HOH HOH . 
D 4 HOH A 131 631 635 HOH HOH . 
D 4 HOH A 132 632 521 HOH HOH . 
D 4 HOH A 133 633 697 HOH HOH . 
D 4 HOH A 134 634 527 HOH HOH . 
D 4 HOH A 135 635 422 HOH HOH . 
D 4 HOH A 136 636 543 HOH HOH . 
D 4 HOH A 137 637 546 HOH HOH . 
D 4 HOH A 138 638 519 HOH HOH . 
D 4 HOH A 139 639 513 HOH HOH . 
D 4 HOH A 140 640 454 HOH HOH . 
D 4 HOH A 141 641 594 HOH HOH . 
D 4 HOH A 142 642 496 HOH HOH . 
D 4 HOH A 143 643 520 HOH HOH . 
D 4 HOH A 144 644 552 HOH HOH . 
D 4 HOH A 145 645 695 HOH HOH . 
D 4 HOH A 146 646 456 HOH HOH . 
D 4 HOH A 147 647 676 HOH HOH . 
D 4 HOH A 148 648 636 HOH HOH . 
D 4 HOH A 149 649 703 HOH HOH . 
D 4 HOH A 150 650 507 HOH HOH . 
D 4 HOH A 151 651 657 HOH HOH . 
D 4 HOH A 152 652 505 HOH HOH . 
D 4 HOH A 153 653 492 HOH HOH . 
D 4 HOH A 154 654 476 HOH HOH . 
D 4 HOH A 155 655 458 HOH HOH . 
D 4 HOH A 156 656 438 HOH HOH . 
D 4 HOH A 157 657 637 HOH HOH . 
D 4 HOH A 158 658 478 HOH HOH . 
D 4 HOH A 159 659 457 HOH HOH . 
D 4 HOH A 160 660 442 HOH HOH . 
D 4 HOH A 161 661 668 HOH HOH . 
D 4 HOH A 162 662 551 HOH HOH . 
D 4 HOH A 163 663 662 HOH HOH . 
D 4 HOH A 164 664 488 HOH HOH . 
D 4 HOH A 165 665 455 HOH HOH . 
D 4 HOH A 166 666 702 HOH HOH . 
D 4 HOH A 167 667 432 HOH HOH . 
D 4 HOH A 168 668 472 HOH HOH . 
D 4 HOH A 169 669 560 HOH HOH . 
D 4 HOH A 170 670 684 HOH HOH . 
D 4 HOH A 171 671 624 HOH HOH . 
D 4 HOH A 172 672 597 HOH HOH . 
D 4 HOH A 173 673 567 HOH HOH . 
D 4 HOH A 174 674 675 HOH HOH . 
D 4 HOH A 175 675 648 HOH HOH . 
D 4 HOH A 176 676 469 HOH HOH . 
D 4 HOH A 177 677 614 HOH HOH . 
D 4 HOH A 178 678 523 HOH HOH . 
D 4 HOH A 179 679 638 HOH HOH . 
D 4 HOH A 180 680 498 HOH HOH . 
D 4 HOH A 181 681 514 HOH HOH . 
D 4 HOH A 182 682 581 HOH HOH . 
D 4 HOH A 183 683 598 HOH HOH . 
D 4 HOH A 184 684 618 HOH HOH . 
D 4 HOH A 185 685 659 HOH HOH . 
D 4 HOH A 186 686 653 HOH HOH . 
D 4 HOH A 187 687 542 HOH HOH . 
D 4 HOH A 188 688 661 HOH HOH . 
D 4 HOH A 189 689 453 HOH HOH . 
D 4 HOH A 190 690 510 HOH HOH . 
D 4 HOH A 191 691 433 HOH HOH . 
D 4 HOH A 192 692 555 HOH HOH . 
D 4 HOH A 193 693 647 HOH HOH . 
D 4 HOH A 194 694 502 HOH HOH . 
D 4 HOH A 195 695 529 HOH HOH . 
D 4 HOH A 196 696 654 HOH HOH . 
D 4 HOH A 197 697 646 HOH HOH . 
D 4 HOH A 198 698 595 HOH HOH . 
D 4 HOH A 199 699 621 HOH HOH . 
D 4 HOH A 200 700 538 HOH HOH . 
D 4 HOH A 201 701 687 HOH HOH . 
D 4 HOH A 202 702 490 HOH HOH . 
D 4 HOH A 203 703 701 HOH HOH . 
D 4 HOH A 204 704 685 HOH HOH . 
D 4 HOH A 205 705 483 HOH HOH . 
D 4 HOH A 206 706 694 HOH HOH . 
D 4 HOH A 207 707 630 HOH HOH . 
D 4 HOH A 208 708 565 HOH HOH . 
D 4 HOH A 209 709 665 HOH HOH . 
D 4 HOH A 210 710 656 HOH HOH . 
D 4 HOH A 211 711 617 HOH HOH . 
D 4 HOH A 212 712 674 HOH HOH . 
D 4 HOH A 213 713 690 HOH HOH . 
D 4 HOH A 214 714 574 HOH HOH . 
D 4 HOH A 215 715 487 HOH HOH . 
D 4 HOH A 216 716 579 HOH HOH . 
D 4 HOH A 217 717 670 HOH HOH . 
D 4 HOH A 218 718 541 HOH HOH . 
D 4 HOH A 219 719 650 HOH HOH . 
D 4 HOH A 220 720 642 HOH HOH . 
D 4 HOH A 221 721 682 HOH HOH . 
D 4 HOH A 222 722 663 HOH HOH . 
D 4 HOH A 223 723 652 HOH HOH . 
D 4 HOH A 224 724 548 HOH HOH . 
D 4 HOH A 225 725 639 HOH HOH . 
D 4 HOH A 226 726 471 HOH HOH . 
D 4 HOH A 227 727 643 HOH HOH . 
D 4 HOH A 228 728 462 HOH HOH . 
D 4 HOH A 229 729 512 HOH HOH . 
D 4 HOH A 230 730 645 HOH HOH . 
D 4 HOH A 231 731 671 HOH HOH . 
D 4 HOH A 232 732 578 HOH HOH . 
D 4 HOH A 233 733 649 HOH HOH . 
D 4 HOH A 234 734 473 HOH HOH . 
D 4 HOH A 235 735 651 HOH HOH . 
D 4 HOH A 236 736 686 HOH HOH . 
D 4 HOH A 237 737 525 HOH HOH . 
D 4 HOH A 238 738 608 HOH HOH . 
D 4 HOH A 239 739 606 HOH HOH . 
D 4 HOH A 240 740 681 HOH HOH . 
D 4 HOH A 241 741 655 HOH HOH . 
D 4 HOH A 242 742 680 HOH HOH . 
D 4 HOH A 243 743 518 HOH HOH . 
D 4 HOH A 244 744 596 HOH HOH . 
D 4 HOH A 245 745 667 HOH HOH . 
D 4 HOH A 246 746 644 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . B 2 -21.763 41.319 -22.773 1 69.64 ? C TRS 401 A 1 
HETATM 2 C C1 TRS . . . B 2 -21.196 40.242 -21.86 1 53.67 ? C1 TRS 401 A 1 
HETATM 3 C C2 TRS . . . B 2 -21.125 41.269 -24.127 1 79.16 ? C2 TRS 401 A 1 
HETATM 4 C C3 TRS . . . B 2 -21.545 42.675 -22.181 1 86.74 ? C3 TRS 401 A 1 
HETATM 5 N N TRS . . . B 2 -23.241 41.116 -22.907 1 81.87 ? N TRS 401 A 1 
HETATM 6 O O1 TRS . . . B 2 -22.224 39.34 -21.519 1 82.46 ? O1 TRS 401 A 1 
HETATM 7 O O2 TRS . . . B 2 -21.29 39.958 -24.646 1 86.25 ? O2 TRS 401 A 1 
HETATM 8 O O3 TRS . . . B 2 -22.042 42.615 -20.908 1 58.85 ? O3 TRS 401 A 1 
HETATM 9 H H11 TRS . . . B 2 -20.797 40.705 -20.955 1 64.4 ? H11 TRS 401 A 1 
HETATM 10 H H12 TRS . . . B 2 -20.396 39.709 -22.379 1 64.4 ? H12 TRS 401 A 1 
HETATM 11 H H21 TRS . . . B 2 -20.062 41.507 -24.038 1 94.99 ? H21 TRS 401 A 1 
HETATM 12 H H22 TRS . . . B 2 -21.607 41.996 -24.783 1 94.99 ? H22 TRS 401 A 1 
HETATM 13 H H31 TRS . . . B 2 -20.482 42.924 -22.145 1 104.08 ? H31 TRS 401 A 1 
HETATM 14 H H32 TRS . . . B 2 -22.079 43.442 -22.745 1 104.08 ? H32 TRS 401 A 1 
HETATM 15 H HN1 TRS . . . B 2 -23.682 41.177 -21.975 1 98.24 ? HN1 TRS 401 A 1 
HETATM 16 H HN2 TRS . . . B 2 -23.634 41.846 -23.523 1 98.24 ? HN2 TRS 401 A 1 
HETATM 17 H HN3 TRS . . . B 2 -23.425 40.185 -23.314 1 98.24 ? HN3 TRS 401 A 1 
HETATM 18 H HO1 TRS . . . B 2 -21.87 38.652 -20.939 0 98.95 ? HO1 TRS 401 A 1 
HETATM 19 H HO2 TRS . . . B 2 -20.883 39.905 -25.522 0 103.5 ? HO2 TRS 401 A 1 
HETATM 20 H HO3 TRS . . . B 2 -22.392 41.729 -20.74 1 70.62 ? HO3 TRS 401 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           1353 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           20 
#