data_5QFJ # _model_server_result.job_id mK-tjygbPWpscSDWdZClWw _model_server_result.datetime_utc '2025-07-03 03:08:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QFJ # _exptl.entry_id 5QFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 210.084 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4,5-dichloro-1H-imidazol-1-yl)ethanethioamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QFJ _cell.length_a 90.451 _cell.length_b 90.451 _cell.length_c 107.302 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H5 Cl2 N3 S' _chem_comp.formula_weight 210.084 _chem_comp.id JOJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4,5-dichloro-1H-imidazol-1-yl)ethanethioamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL11 C10 JOJ sing 173 n n N01 C02 JOJ sing 174 n n C04 C02 JOJ sing 175 n n C04 N05 JOJ sing 176 n n C02 S03 JOJ doub 177 n n C10 N05 JOJ sing 178 n y C10 C08 JOJ doub 179 n y N05 C06 JOJ sing 180 n y C08 CL09 JOJ sing 181 n n C08 N07 JOJ sing 182 n y C06 N07 JOJ doub 183 n y N01 H011 JOJ sing 184 n n N01 H012 JOJ sing 185 n n C04 H041 JOJ sing 186 n n C04 H042 JOJ sing 187 n n C06 H061 JOJ sing 188 n n # _atom_sites.entry_id 5QFJ _atom_sites.fract_transf_matrix[1][1] 0.011056 _atom_sites.fract_transf_matrix[1][2] 0.006383 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 500 TRS TRS . C 3 JOJ A 1 402 1 JOJ LIG . D 4 HOH A 1 501 678 HOH HOH . D 4 HOH A 2 502 696 HOH HOH . D 4 HOH A 3 503 419 HOH HOH . D 4 HOH A 4 504 664 HOH HOH . D 4 HOH A 5 505 632 HOH HOH . D 4 HOH A 6 506 605 HOH HOH . D 4 HOH A 7 507 465 HOH HOH . D 4 HOH A 8 508 470 HOH HOH . D 4 HOH A 9 509 421 HOH HOH . D 4 HOH A 10 510 677 HOH HOH . D 4 HOH A 11 511 634 HOH HOH . D 4 HOH A 12 512 482 HOH HOH . D 4 HOH A 13 513 673 HOH HOH . D 4 HOH A 14 514 569 HOH HOH . D 4 HOH A 15 515 524 HOH HOH . D 4 HOH A 16 516 679 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 464 HOH HOH . D 4 HOH A 19 519 423 HOH HOH . D 4 HOH A 20 520 688 HOH HOH . D 4 HOH A 21 521 414 HOH HOH . D 4 HOH A 22 522 501 HOH HOH . D 4 HOH A 23 523 434 HOH HOH . D 4 HOH A 24 524 693 HOH HOH . D 4 HOH A 25 525 448 HOH HOH . D 4 HOH A 26 526 658 HOH HOH . D 4 HOH A 27 527 412 HOH HOH . D 4 HOH A 28 528 577 HOH HOH . D 4 HOH A 29 529 627 HOH HOH . D 4 HOH A 30 530 698 HOH HOH . D 4 HOH A 31 531 460 HOH HOH . D 4 HOH A 32 532 589 HOH HOH . D 4 HOH A 33 533 427 HOH HOH . D 4 HOH A 34 534 536 HOH HOH . D 4 HOH A 35 535 431 HOH HOH . D 4 HOH A 36 536 405 HOH HOH . D 4 HOH A 37 537 461 HOH HOH . D 4 HOH A 38 538 409 HOH HOH . D 4 HOH A 39 539 404 HOH HOH . D 4 HOH A 40 540 522 HOH HOH . D 4 HOH A 41 541 411 HOH HOH . D 4 HOH A 42 542 666 HOH HOH . D 4 HOH A 43 543 628 HOH HOH . D 4 HOH A 44 544 602 HOH HOH . D 4 HOH A 45 545 566 HOH HOH . D 4 HOH A 46 546 509 HOH HOH . D 4 HOH A 47 547 491 HOH HOH . D 4 HOH A 48 548 406 HOH HOH . D 4 HOH A 49 549 449 HOH HOH . D 4 HOH A 50 550 441 HOH HOH . D 4 HOH A 51 551 407 HOH HOH . D 4 HOH A 52 552 540 HOH HOH . D 4 HOH A 53 553 481 HOH HOH . D 4 HOH A 54 554 408 HOH HOH . D 4 HOH A 55 555 611 HOH HOH . D 4 HOH A 56 556 402 HOH HOH . D 4 HOH A 57 557 669 HOH HOH . D 4 HOH A 58 558 426 HOH HOH . D 4 HOH A 59 559 429 HOH HOH . D 4 HOH A 60 560 466 HOH HOH . D 4 HOH A 61 561 486 HOH HOH . D 4 HOH A 62 562 554 HOH HOH . D 4 HOH A 63 563 459 HOH HOH . D 4 HOH A 64 564 435 HOH HOH . D 4 HOH A 65 565 619 HOH HOH . D 4 HOH A 66 566 440 HOH HOH . D 4 HOH A 67 567 430 HOH HOH . D 4 HOH A 68 568 631 HOH HOH . D 4 HOH A 69 569 587 HOH HOH . D 4 HOH A 70 570 450 HOH HOH . D 4 HOH A 71 571 452 HOH HOH . D 4 HOH A 72 572 533 HOH HOH . D 4 HOH A 73 573 704 HOH HOH . D 4 HOH A 74 574 683 HOH HOH . D 4 HOH A 75 575 479 HOH HOH . D 4 HOH A 76 576 446 HOH HOH . D 4 HOH A 77 577 497 HOH HOH . D 4 HOH A 78 578 463 HOH HOH . D 4 HOH A 79 579 528 HOH HOH . D 4 HOH A 80 580 576 HOH HOH . D 4 HOH A 81 581 590 HOH HOH . D 4 HOH A 82 582 415 HOH HOH . D 4 HOH A 83 583 575 HOH HOH . D 4 HOH A 84 584 417 HOH HOH . D 4 HOH A 85 585 451 HOH HOH . D 4 HOH A 86 586 616 HOH HOH . D 4 HOH A 87 587 493 HOH HOH . D 4 HOH A 88 588 439 HOH HOH . D 4 HOH A 89 589 468 HOH HOH . D 4 HOH A 90 590 700 HOH HOH . D 4 HOH A 91 591 672 HOH HOH . D 4 HOH A 92 592 556 HOH HOH . D 4 HOH A 93 593 553 HOH HOH . D 4 HOH A 94 594 580 HOH HOH . D 4 HOH A 95 595 403 HOH HOH . D 4 HOH A 96 596 437 HOH HOH . D 4 HOH A 97 597 530 HOH HOH . D 4 HOH A 98 598 413 HOH HOH . D 4 HOH A 99 599 467 HOH HOH . D 4 HOH A 100 600 633 HOH HOH . D 4 HOH A 101 601 689 HOH HOH . D 4 HOH A 102 602 410 HOH HOH . D 4 HOH A 103 603 424 HOH HOH . D 4 HOH A 104 604 625 HOH HOH . D 4 HOH A 105 605 436 HOH HOH . D 4 HOH A 106 606 416 HOH HOH . D 4 HOH A 107 607 444 HOH HOH . D 4 HOH A 108 608 504 HOH HOH . D 4 HOH A 109 609 559 HOH HOH . D 4 HOH A 110 610 447 HOH HOH . D 4 HOH A 111 611 484 HOH HOH . D 4 HOH A 112 612 692 HOH HOH . D 4 HOH A 113 613 561 HOH HOH . D 4 HOH A 114 614 418 HOH HOH . D 4 HOH A 115 615 503 HOH HOH . D 4 HOH A 116 616 539 HOH HOH . D 4 HOH A 117 617 549 HOH HOH . D 4 HOH A 118 618 526 HOH HOH . D 4 HOH A 119 619 443 HOH HOH . D 4 HOH A 120 620 535 HOH HOH . D 4 HOH A 121 621 562 HOH HOH . D 4 HOH A 122 622 660 HOH HOH . D 4 HOH A 123 623 477 HOH HOH . D 4 HOH A 124 624 506 HOH HOH . D 4 HOH A 125 625 563 HOH HOH . D 4 HOH A 126 626 474 HOH HOH . D 4 HOH A 127 627 420 HOH HOH . D 4 HOH A 128 628 475 HOH HOH . D 4 HOH A 129 629 489 HOH HOH . D 4 HOH A 130 630 699 HOH HOH . D 4 HOH A 131 631 635 HOH HOH . D 4 HOH A 132 632 521 HOH HOH . D 4 HOH A 133 633 697 HOH HOH . D 4 HOH A 134 634 527 HOH HOH . D 4 HOH A 135 635 422 HOH HOH . D 4 HOH A 136 636 543 HOH HOH . D 4 HOH A 137 637 546 HOH HOH . D 4 HOH A 138 638 519 HOH HOH . D 4 HOH A 139 639 513 HOH HOH . D 4 HOH A 140 640 454 HOH HOH . D 4 HOH A 141 641 594 HOH HOH . D 4 HOH A 142 642 496 HOH HOH . D 4 HOH A 143 643 520 HOH HOH . D 4 HOH A 144 644 552 HOH HOH . D 4 HOH A 145 645 695 HOH HOH . D 4 HOH A 146 646 456 HOH HOH . D 4 HOH A 147 647 676 HOH HOH . D 4 HOH A 148 648 636 HOH HOH . D 4 HOH A 149 649 703 HOH HOH . D 4 HOH A 150 650 507 HOH HOH . D 4 HOH A 151 651 657 HOH HOH . D 4 HOH A 152 652 505 HOH HOH . D 4 HOH A 153 653 492 HOH HOH . D 4 HOH A 154 654 476 HOH HOH . D 4 HOH A 155 655 458 HOH HOH . D 4 HOH A 156 656 438 HOH HOH . D 4 HOH A 157 657 637 HOH HOH . D 4 HOH A 158 658 478 HOH HOH . D 4 HOH A 159 659 457 HOH HOH . D 4 HOH A 160 660 442 HOH HOH . D 4 HOH A 161 661 668 HOH HOH . D 4 HOH A 162 662 551 HOH HOH . D 4 HOH A 163 663 662 HOH HOH . D 4 HOH A 164 664 488 HOH HOH . D 4 HOH A 165 665 455 HOH HOH . D 4 HOH A 166 666 702 HOH HOH . D 4 HOH A 167 667 432 HOH HOH . D 4 HOH A 168 668 472 HOH HOH . D 4 HOH A 169 669 560 HOH HOH . D 4 HOH A 170 670 684 HOH HOH . D 4 HOH A 171 671 624 HOH HOH . D 4 HOH A 172 672 597 HOH HOH . D 4 HOH A 173 673 567 HOH HOH . D 4 HOH A 174 674 675 HOH HOH . D 4 HOH A 175 675 648 HOH HOH . D 4 HOH A 176 676 469 HOH HOH . D 4 HOH A 177 677 614 HOH HOH . D 4 HOH A 178 678 523 HOH HOH . D 4 HOH A 179 679 638 HOH HOH . D 4 HOH A 180 680 498 HOH HOH . D 4 HOH A 181 681 514 HOH HOH . D 4 HOH A 182 682 581 HOH HOH . D 4 HOH A 183 683 598 HOH HOH . D 4 HOH A 184 684 618 HOH HOH . D 4 HOH A 185 685 659 HOH HOH . D 4 HOH A 186 686 653 HOH HOH . D 4 HOH A 187 687 542 HOH HOH . D 4 HOH A 188 688 661 HOH HOH . D 4 HOH A 189 689 453 HOH HOH . D 4 HOH A 190 690 510 HOH HOH . D 4 HOH A 191 691 433 HOH HOH . D 4 HOH A 192 692 555 HOH HOH . D 4 HOH A 193 693 647 HOH HOH . D 4 HOH A 194 694 502 HOH HOH . D 4 HOH A 195 695 529 HOH HOH . D 4 HOH A 196 696 654 HOH HOH . D 4 HOH A 197 697 646 HOH HOH . D 4 HOH A 198 698 595 HOH HOH . D 4 HOH A 199 699 621 HOH HOH . D 4 HOH A 200 700 538 HOH HOH . D 4 HOH A 201 701 687 HOH HOH . D 4 HOH A 202 702 490 HOH HOH . D 4 HOH A 203 703 701 HOH HOH . D 4 HOH A 204 704 685 HOH HOH . D 4 HOH A 205 705 483 HOH HOH . D 4 HOH A 206 706 694 HOH HOH . D 4 HOH A 207 707 630 HOH HOH . D 4 HOH A 208 708 565 HOH HOH . D 4 HOH A 209 709 665 HOH HOH . D 4 HOH A 210 710 656 HOH HOH . D 4 HOH A 211 711 617 HOH HOH . D 4 HOH A 212 712 674 HOH HOH . D 4 HOH A 213 713 690 HOH HOH . D 4 HOH A 214 714 574 HOH HOH . D 4 HOH A 215 715 487 HOH HOH . D 4 HOH A 216 716 579 HOH HOH . D 4 HOH A 217 717 670 HOH HOH . D 4 HOH A 218 718 541 HOH HOH . D 4 HOH A 219 719 650 HOH HOH . D 4 HOH A 220 720 642 HOH HOH . D 4 HOH A 221 721 682 HOH HOH . D 4 HOH A 222 722 663 HOH HOH . D 4 HOH A 223 723 652 HOH HOH . D 4 HOH A 224 724 548 HOH HOH . D 4 HOH A 225 725 639 HOH HOH . D 4 HOH A 226 726 471 HOH HOH . D 4 HOH A 227 727 643 HOH HOH . D 4 HOH A 228 728 462 HOH HOH . D 4 HOH A 229 729 512 HOH HOH . D 4 HOH A 230 730 645 HOH HOH . D 4 HOH A 231 731 671 HOH HOH . D 4 HOH A 232 732 578 HOH HOH . D 4 HOH A 233 733 649 HOH HOH . D 4 HOH A 234 734 473 HOH HOH . D 4 HOH A 235 735 651 HOH HOH . D 4 HOH A 236 736 686 HOH HOH . D 4 HOH A 237 737 525 HOH HOH . D 4 HOH A 238 738 608 HOH HOH . D 4 HOH A 239 739 606 HOH HOH . D 4 HOH A 240 740 681 HOH HOH . D 4 HOH A 241 741 655 HOH HOH . D 4 HOH A 242 742 680 HOH HOH . D 4 HOH A 243 743 518 HOH HOH . D 4 HOH A 244 744 596 HOH HOH . D 4 HOH A 245 745 667 HOH HOH . D 4 HOH A 246 746 644 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JOJ . C . C 3 -23.177 23.375 -25.35 0.19 51.83 ? C10 JOJ 402 A 1 HETATM 2 C C10 JOJ . D . C 3 -23.177 23.375 -25.35 0.19 51.83 ? C10 JOJ 402 A 1 HETATM 3 N N01 JOJ . C . C 3 -21.938 19.202 -26.364 0.19 57.78 ? N01 JOJ 402 A 1 HETATM 4 N N01 JOJ . D . C 3 -21.938 19.202 -26.364 0.19 57.76 ? N01 JOJ 402 A 1 HETATM 5 C C02 JOJ . C . C 3 -22.775 20.248 -26.069 0.19 59.13 ? C02 JOJ 402 A 1 HETATM 6 C C02 JOJ . D . C 3 -22.775 20.248 -26.069 0.19 59.1 ? C02 JOJ 402 A 1 HETATM 7 S S03 JOJ . C . C 3 -24.246 20.044 -25.603 0.19 75.73 ? S03 JOJ 402 A 1 HETATM 8 S S03 JOJ . D . C 3 -24.246 20.044 -25.603 0.19 75.76 ? S03 JOJ 402 A 1 HETATM 9 C C04 JOJ . C . C 3 -21.95 21.652 -26.18 0.19 46.86 ? C04 JOJ 402 A 1 HETATM 10 C C04 JOJ . D . C 3 -21.95 21.652 -26.18 0.19 46.87 ? C04 JOJ 402 A 1 HETATM 11 N N05 JOJ . C . C 3 -22.282 22.47 -25.228 0.19 51.06 ? N05 JOJ 402 A 1 HETATM 12 N N05 JOJ . D . C 3 -22.282 22.47 -25.228 0.19 51.06 ? N05 JOJ 402 A 1 HETATM 13 C C06 JOJ . C . C 3 -21.896 22.453 -23.972 0.19 43.05 ? C06 JOJ 402 A 1 HETATM 14 C C06 JOJ . D . C 3 -21.896 22.453 -23.972 0.19 43.06 ? C06 JOJ 402 A 1 HETATM 15 N N07 JOJ . C . C 3 -22.497 23.393 -23.307 0.19 36.44 ? N07 JOJ 402 A 1 HETATM 16 N N07 JOJ . D . C 3 -22.497 23.393 -23.307 0.19 36.48 ? N07 JOJ 402 A 1 HETATM 17 C C08 JOJ . C . C 3 -23.385 24.011 -24.227 0.19 46.76 ? C08 JOJ 402 A 1 HETATM 18 C C08 JOJ . D . C 3 -23.385 24.011 -24.227 0.19 46.76 ? C08 JOJ 402 A 1 HETATM 19 CL CL09 JOJ . C . C 3 -24.503 25.29 -23.94 0.19 39.21 ? CL09 JOJ 402 A 1 HETATM 20 CL CL09 JOJ . D . C 3 -24.503 25.29 -23.94 0.19 39.18 ? CL09 JOJ 402 A 1 HETATM 21 CL CL11 JOJ . C . C 3 -23.798 23.511 -26.579 0.19 65.72 ? CL11 JOJ 402 A 1 HETATM 22 CL CL11 JOJ . D . C 3 -23.798 23.511 -26.579 0.19 65.73 ? CL11 JOJ 402 A 1 HETATM 23 H H011 JOJ . C . C 3 -20.985 19.436 -26.594 0.19 69.33 ? H011 JOJ 402 A 1 HETATM 24 H H011 JOJ . D . C 3 -20.985 19.436 -26.594 0.19 69.31 ? H011 JOJ 402 A 1 HETATM 25 H H012 JOJ . C . C 3 -22.341 18.276 -26.328 0.19 69.33 ? H012 JOJ 402 A 1 HETATM 26 H H012 JOJ . D . C 3 -22.341 18.276 -26.328 0.19 69.31 ? H012 JOJ 402 A 1 HETATM 27 H H041 JOJ . C . C 3 -22.183 22.128 -27.167 0.19 56.23 ? H041 JOJ 402 A 1 HETATM 28 H H041 JOJ . D . C 3 -22.183 22.128 -27.167 0.19 56.24 ? H041 JOJ 402 A 1 HETATM 29 H H042 JOJ . C . C 3 -20.861 21.448 -26.107 0.19 56.23 ? H042 JOJ 402 A 1 HETATM 30 H H042 JOJ . D . C 3 -20.861 21.448 -26.107 0.19 56.24 ? H042 JOJ 402 A 1 HETATM 31 H H061 JOJ . C . C 3 -21.176 21.747 -23.563 0.19 51.66 ? H061 JOJ 402 A 1 HETATM 32 H H061 JOJ . D . C 3 -21.176 21.747 -23.563 0.19 51.67 ? H061 JOJ 402 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #