data_5QFK
#
_model_server_result.job_id            vluaTQsmRi_BrHWcXtGPPw 
_model_server_result.datetime_utc      '2024-11-14 07:55:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qfk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5QFK 
#
_exptl.entry_id    5QFK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5QFK 
_cell.length_a            89.872 
_cell.length_b            89.872 
_cell.length_c            106.631 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QFK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 373 n n 
C C2 TRS sing 374 n n 
C C3 TRS sing 375 n n 
C N TRS sing 376 n n 
C1 O1 TRS sing 377 n n 
C1 H11 TRS sing 378 n n 
C1 H12 TRS sing 379 n n 
C2 O2 TRS sing 380 n n 
C2 H21 TRS sing 381 n n 
C2 H22 TRS sing 382 n n 
C3 O3 TRS sing 383 n n 
C3 H31 TRS sing 384 n n 
C3 H32 TRS sing 385 n n 
N HN1 TRS sing 386 n n 
N HN2 TRS sing 387 n n 
N HN3 TRS sing 388 n n 
O1 HO1 TRS sing 389 n n 
O2 HO2 TRS sing 390 n n 
O3 HO3 TRS sing 391 n n 
#
_atom_sites.entry_id                     5QFK 
_atom_sites.fract_transf_matrix[1][1]    0.011127 
_atom_sites.fract_transf_matrix[1][2]    0.006424 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012848 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 JJP A 1 401 1 JJP LIG . 
C 2 JJP A 1 402 2 JJP LIG . 
D 3 TRS A 1 403 500 TRS TRS . 
E 4 HOH A 1 501 36 HOH HOH . 
E 4 HOH A 2 502 229 HOH HOH . 
E 4 HOH A 3 503 191 HOH HOH . 
E 4 HOH A 4 504 232 HOH HOH . 
E 4 HOH A 5 505 234 HOH HOH . 
E 4 HOH A 6 506 190 HOH HOH . 
E 4 HOH A 7 507 157 HOH HOH . 
E 4 HOH A 8 508 137 HOH HOH . 
E 4 HOH A 9 509 193 HOH HOH . 
E 4 HOH A 10 510 184 HOH HOH . 
E 4 HOH A 11 511 173 HOH HOH . 
E 4 HOH A 12 512 151 HOH HOH . 
E 4 HOH A 13 513 219 HOH HOH . 
E 4 HOH A 14 514 206 HOH HOH . 
E 4 HOH A 15 515 148 HOH HOH . 
E 4 HOH A 16 516 154 HOH HOH . 
E 4 HOH A 17 517 82 HOH HOH . 
E 4 HOH A 18 518 247 HOH HOH . 
E 4 HOH A 19 519 111 HOH HOH . 
E 4 HOH A 20 520 145 HOH HOH . 
E 4 HOH A 21 521 101 HOH HOH . 
E 4 HOH A 22 522 56 HOH HOH . 
E 4 HOH A 23 523 231 HOH HOH . 
E 4 HOH A 24 524 30 HOH HOH . 
E 4 HOH A 25 525 196 HOH HOH . 
E 4 HOH A 26 526 207 HOH HOH . 
E 4 HOH A 27 527 57 HOH HOH . 
E 4 HOH A 28 528 153 HOH HOH . 
E 4 HOH A 29 529 86 HOH HOH . 
E 4 HOH A 30 530 100 HOH HOH . 
E 4 HOH A 31 531 249 HOH HOH . 
E 4 HOH A 32 532 172 HOH HOH . 
E 4 HOH A 33 533 38 HOH HOH . 
E 4 HOH A 34 534 114 HOH HOH . 
E 4 HOH A 35 535 32 HOH HOH . 
E 4 HOH A 36 536 120 HOH HOH . 
E 4 HOH A 37 537 71 HOH HOH . 
E 4 HOH A 38 538 136 HOH HOH . 
E 4 HOH A 39 539 181 HOH HOH . 
E 4 HOH A 40 540 42 HOH HOH . 
E 4 HOH A 41 541 89 HOH HOH . 
E 4 HOH A 42 542 18 HOH HOH . 
E 4 HOH A 43 543 213 HOH HOH . 
E 4 HOH A 44 544 104 HOH HOH . 
E 4 HOH A 45 545 160 HOH HOH . 
E 4 HOH A 46 546 78 HOH HOH . 
E 4 HOH A 47 547 6 HOH HOH . 
E 4 HOH A 48 548 27 HOH HOH . 
E 4 HOH A 49 549 26 HOH HOH . 
E 4 HOH A 50 550 135 HOH HOH . 
E 4 HOH A 51 551 20 HOH HOH . 
E 4 HOH A 52 552 22 HOH HOH . 
E 4 HOH A 53 553 198 HOH HOH . 
E 4 HOH A 54 554 131 HOH HOH . 
E 4 HOH A 55 555 58 HOH HOH . 
E 4 HOH A 56 556 107 HOH HOH . 
E 4 HOH A 57 557 216 HOH HOH . 
E 4 HOH A 58 558 79 HOH HOH . 
E 4 HOH A 59 559 200 HOH HOH . 
E 4 HOH A 60 560 171 HOH HOH . 
E 4 HOH A 61 561 13 HOH HOH . 
E 4 HOH A 62 562 133 HOH HOH . 
E 4 HOH A 63 563 3 HOH HOH . 
E 4 HOH A 64 564 124 HOH HOH . 
E 4 HOH A 65 565 51 HOH HOH . 
E 4 HOH A 66 566 2 HOH HOH . 
E 4 HOH A 67 567 7 HOH HOH . 
E 4 HOH A 68 568 99 HOH HOH . 
E 4 HOH A 69 569 113 HOH HOH . 
E 4 HOH A 70 570 248 HOH HOH . 
E 4 HOH A 71 571 69 HOH HOH . 
E 4 HOH A 72 572 40 HOH HOH . 
E 4 HOH A 73 573 102 HOH HOH . 
E 4 HOH A 74 574 17 HOH HOH . 
E 4 HOH A 75 575 192 HOH HOH . 
E 4 HOH A 76 576 91 HOH HOH . 
E 4 HOH A 77 577 11 HOH HOH . 
E 4 HOH A 78 578 105 HOH HOH . 
E 4 HOH A 79 579 186 HOH HOH . 
E 4 HOH A 80 580 92 HOH HOH . 
E 4 HOH A 81 581 144 HOH HOH . 
E 4 HOH A 82 582 48 HOH HOH . 
E 4 HOH A 83 583 4 HOH HOH . 
E 4 HOH A 84 584 60 HOH HOH . 
E 4 HOH A 85 585 62 HOH HOH . 
E 4 HOH A 86 586 52 HOH HOH . 
E 4 HOH A 87 587 174 HOH HOH . 
E 4 HOH A 88 588 53 HOH HOH . 
E 4 HOH A 89 589 8 HOH HOH . 
E 4 HOH A 90 590 116 HOH HOH . 
E 4 HOH A 91 591 245 HOH HOH . 
E 4 HOH A 92 592 5 HOH HOH . 
E 4 HOH A 93 593 12 HOH HOH . 
E 4 HOH A 94 594 25 HOH HOH . 
E 4 HOH A 95 595 138 HOH HOH . 
E 4 HOH A 96 596 9 HOH HOH . 
E 4 HOH A 97 597 106 HOH HOH . 
E 4 HOH A 98 598 80 HOH HOH . 
E 4 HOH A 99 599 96 HOH HOH . 
E 4 HOH A 100 600 10 HOH HOH . 
E 4 HOH A 101 601 93 HOH HOH . 
E 4 HOH A 102 602 70 HOH HOH . 
E 4 HOH A 103 603 94 HOH HOH . 
E 4 HOH A 104 604 1 HOH HOH . 
E 4 HOH A 105 605 44 HOH HOH . 
E 4 HOH A 106 606 170 HOH HOH . 
E 4 HOH A 107 607 155 HOH HOH . 
E 4 HOH A 108 608 65 HOH HOH . 
E 4 HOH A 109 609 43 HOH HOH . 
E 4 HOH A 110 610 127 HOH HOH . 
E 4 HOH A 111 611 125 HOH HOH . 
E 4 HOH A 112 612 118 HOH HOH . 
E 4 HOH A 113 613 28 HOH HOH . 
E 4 HOH A 114 614 31 HOH HOH . 
E 4 HOH A 115 615 74 HOH HOH . 
E 4 HOH A 116 616 16 HOH HOH . 
E 4 HOH A 117 617 59 HOH HOH . 
E 4 HOH A 118 618 39 HOH HOH . 
E 4 HOH A 119 619 41 HOH HOH . 
E 4 HOH A 120 620 77 HOH HOH . 
E 4 HOH A 121 621 87 HOH HOH . 
E 4 HOH A 122 622 24 HOH HOH . 
E 4 HOH A 123 623 166 HOH HOH . 
E 4 HOH A 124 624 14 HOH HOH . 
E 4 HOH A 125 625 19 HOH HOH . 
E 4 HOH A 126 626 15 HOH HOH . 
E 4 HOH A 127 627 175 HOH HOH . 
E 4 HOH A 128 628 45 HOH HOH . 
E 4 HOH A 129 629 55 HOH HOH . 
E 4 HOH A 130 630 139 HOH HOH . 
E 4 HOH A 131 631 109 HOH HOH . 
E 4 HOH A 132 632 243 HOH HOH . 
E 4 HOH A 133 633 81 HOH HOH . 
E 4 HOH A 134 634 21 HOH HOH . 
E 4 HOH A 135 635 35 HOH HOH . 
E 4 HOH A 136 636 83 HOH HOH . 
E 4 HOH A 137 637 214 HOH HOH . 
E 4 HOH A 138 638 84 HOH HOH . 
E 4 HOH A 139 639 140 HOH HOH . 
E 4 HOH A 140 640 240 HOH HOH . 
E 4 HOH A 141 641 129 HOH HOH . 
E 4 HOH A 142 642 23 HOH HOH . 
E 4 HOH A 143 643 152 HOH HOH . 
E 4 HOH A 144 644 33 HOH HOH . 
E 4 HOH A 145 645 142 HOH HOH . 
E 4 HOH A 146 646 98 HOH HOH . 
E 4 HOH A 147 647 95 HOH HOH . 
E 4 HOH A 148 648 68 HOH HOH . 
E 4 HOH A 149 649 235 HOH HOH . 
E 4 HOH A 150 650 85 HOH HOH . 
E 4 HOH A 151 651 47 HOH HOH . 
E 4 HOH A 152 652 90 HOH HOH . 
E 4 HOH A 153 653 204 HOH HOH . 
E 4 HOH A 154 654 180 HOH HOH . 
E 4 HOH A 155 655 227 HOH HOH . 
E 4 HOH A 156 656 218 HOH HOH . 
E 4 HOH A 157 657 199 HOH HOH . 
E 4 HOH A 158 658 221 HOH HOH . 
E 4 HOH A 159 659 110 HOH HOH . 
E 4 HOH A 160 660 34 HOH HOH . 
E 4 HOH A 161 661 228 HOH HOH . 
E 4 HOH A 162 662 183 HOH HOH . 
E 4 HOH A 163 663 141 HOH HOH . 
E 4 HOH A 164 664 37 HOH HOH . 
E 4 HOH A 165 665 161 HOH HOH . 
E 4 HOH A 166 666 67 HOH HOH . 
E 4 HOH A 167 667 195 HOH HOH . 
E 4 HOH A 168 668 119 HOH HOH . 
E 4 HOH A 169 669 76 HOH HOH . 
E 4 HOH A 170 670 73 HOH HOH . 
E 4 HOH A 171 671 50 HOH HOH . 
E 4 HOH A 172 672 46 HOH HOH . 
E 4 HOH A 173 673 210 HOH HOH . 
E 4 HOH A 174 674 223 HOH HOH . 
E 4 HOH A 175 675 108 HOH HOH . 
E 4 HOH A 176 676 211 HOH HOH . 
E 4 HOH A 177 677 244 HOH HOH . 
E 4 HOH A 178 678 149 HOH HOH . 
E 4 HOH A 179 679 54 HOH HOH . 
E 4 HOH A 180 680 122 HOH HOH . 
E 4 HOH A 181 681 233 HOH HOH . 
E 4 HOH A 182 682 117 HOH HOH . 
E 4 HOH A 183 683 66 HOH HOH . 
E 4 HOH A 184 684 208 HOH HOH . 
E 4 HOH A 185 685 49 HOH HOH . 
E 4 HOH A 186 686 121 HOH HOH . 
E 4 HOH A 187 687 250 HOH HOH . 
E 4 HOH A 188 688 230 HOH HOH . 
E 4 HOH A 189 689 167 HOH HOH . 
E 4 HOH A 190 690 224 HOH HOH . 
E 4 HOH A 191 691 61 HOH HOH . 
E 4 HOH A 192 692 103 HOH HOH . 
E 4 HOH A 193 693 146 HOH HOH . 
E 4 HOH A 194 694 209 HOH HOH . 
E 4 HOH A 195 695 179 HOH HOH . 
E 4 HOH A 196 696 143 HOH HOH . 
E 4 HOH A 197 697 97 HOH HOH . 
E 4 HOH A 198 698 187 HOH HOH . 
E 4 HOH A 199 699 162 HOH HOH . 
E 4 HOH A 200 700 150 HOH HOH . 
E 4 HOH A 201 701 242 HOH HOH . 
E 4 HOH A 202 702 29 HOH HOH . 
E 4 HOH A 203 703 164 HOH HOH . 
E 4 HOH A 204 704 115 HOH HOH . 
E 4 HOH A 205 705 185 HOH HOH . 
E 4 HOH A 206 706 112 HOH HOH . 
E 4 HOH A 207 707 217 HOH HOH . 
E 4 HOH A 208 708 169 HOH HOH . 
E 4 HOH A 209 709 75 HOH HOH . 
E 4 HOH A 210 710 72 HOH HOH . 
E 4 HOH A 211 711 130 HOH HOH . 
E 4 HOH A 212 712 215 HOH HOH . 
E 4 HOH A 213 713 201 HOH HOH . 
E 4 HOH A 214 714 239 HOH HOH . 
E 4 HOH A 215 715 220 HOH HOH . 
E 4 HOH A 216 716 147 HOH HOH . 
E 4 HOH A 217 717 189 HOH HOH . 
E 4 HOH A 218 718 202 HOH HOH . 
E 4 HOH A 219 719 123 HOH HOH . 
E 4 HOH A 220 720 178 HOH HOH . 
E 4 HOH A 221 721 88 HOH HOH . 
E 4 HOH A 222 722 237 HOH HOH . 
E 4 HOH A 223 723 205 HOH HOH . 
E 4 HOH A 224 724 238 HOH HOH . 
E 4 HOH A 225 725 126 HOH HOH . 
E 4 HOH A 226 726 177 HOH HOH . 
E 4 HOH A 227 727 158 HOH HOH . 
E 4 HOH A 228 728 236 HOH HOH . 
E 4 HOH A 229 729 132 HOH HOH . 
E 4 HOH A 230 730 63 HOH HOH . 
E 4 HOH A 231 731 222 HOH HOH . 
E 4 HOH A 232 732 194 HOH HOH . 
E 4 HOH A 233 733 165 HOH HOH . 
E 4 HOH A 234 734 168 HOH HOH . 
E 4 HOH A 235 735 159 HOH HOH . 
E 4 HOH A 236 736 134 HOH HOH . 
E 4 HOH A 237 737 225 HOH HOH . 
E 4 HOH A 238 738 246 HOH HOH . 
E 4 HOH A 239 739 203 HOH HOH . 
E 4 HOH A 240 740 188 HOH HOH . 
E 4 HOH A 241 741 64 HOH HOH . 
E 4 HOH A 242 742 241 HOH HOH . 
E 4 HOH A 243 743 197 HOH HOH . 
E 4 HOH A 244 744 163 HOH HOH . 
E 4 HOH A 245 745 128 HOH HOH . 
E 4 HOH A 246 746 212 HOH HOH . 
E 4 HOH A 247 747 182 HOH HOH . 
E 4 HOH A 248 748 156 HOH HOH . 
E 4 HOH A 249 749 226 HOH HOH . 
E 4 HOH A 250 750 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . D 3 21.226 -40.936 -22.739 1 17.12 ? C TRS 403 A 1 
HETATM 2 C C1 TRS . . . D 3 20.731 -39.87 -21.767 1 47.82 ? C1 TRS 403 A 1 
HETATM 3 C C2 TRS . . . D 3 20.631 -40.863 -24.103 1 88.73 ? C2 TRS 403 A 1 
HETATM 4 C C3 TRS . . . D 3 21.051 -42.3 -22.134 1 78.9 ? C3 TRS 403 A 1 
HETATM 5 N N TRS . . . D 3 22.712 -40.734 -22.816 1 66.76 ? N TRS 403 A 1 
HETATM 6 O O1 TRS . . . D 3 21.794 -39.028 -21.405 1 56.7 ? O1 TRS 403 A 1 
HETATM 7 O O2 TRS . . . D 3 20.876 -39.548 -24.544 1 47.67 ? O2 TRS 403 A 1 
HETATM 8 O O3 TRS . . . D 3 21.592 -42.241 -20.886 1 34.54 ? O3 TRS 403 A 1 
HETATM 9 H H11 TRS . . . D 3 20.33 -40.351 -20.872 1 57.39 ? H11 TRS 403 A 1 
HETATM 10 H H12 TRS . . . D 3 19.947 -39.278 -22.244 1 57.39 ? H12 TRS 403 A 1 
HETATM 11 H H21 TRS . . . D 3 19.561 -41.074 -24.045 1 106.48 ? H21 TRS 403 A 1 
HETATM 12 H H22 TRS . . . D 3 21.113 -41.599 -24.75 1 106.48 ? H22 TRS 403 A 1 
HETATM 13 H H31 TRS . . . D 3 19.993 -42.562 -22.06 1 94.68 ? H31 TRS 403 A 1 
HETATM 14 H H32 TRS . . . D 3 21.574 -43.058 -22.721 1 94.68 ? H32 TRS 403 A 1 
HETATM 15 H HN1 TRS . . . D 3 23.116 -40.785 -21.866 1 80.12 ? HN1 TRS 403 A 1 
HETATM 16 H HN2 TRS . . . D 3 23.13 -41.471 -23.408 1 80.12 ? HN2 TRS 403 A 1 
HETATM 17 H HN3 TRS . . . D 3 22.913 -39.808 -23.226 1 80.12 ? HN3 TRS 403 A 1 
HETATM 18 H HO1 TRS . . . D 3 21.476 -38.354 -20.789 1 68.04 ? HO1 TRS 403 A 1 
HETATM 19 H HO2 TRS . . . D 3 20.512 -39.433 -25.432 1 57.21 ? HO2 TRS 403 A 1 
HETATM 20 H HO3 TRS . . . D 3 21.938 -41.352 -20.726 1 41.45 ? HO3 TRS 403 A 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#