data_5QFS # _model_server_result.job_id lnaXnXnuEezTrK1cXf2Oig _model_server_result.datetime_utc '2024-11-14 09:03:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QFS # _exptl.entry_id 5QFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QFS _cell.length_a 90.576 _cell.length_b 90.576 _cell.length_c 106.982 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CD GLU 2 A GLU 2 1_555 A CE LYS 5 A LYS 5 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.156 ? covale ? covale2 A CD GLU 2 A GLU 2 1_555 A CE LYS 5 A LYS 5 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.156 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 365 n n C C2 TRS sing 366 n n C C3 TRS sing 367 n n C N TRS sing 368 n n C1 O1 TRS sing 369 n n C1 H11 TRS sing 370 n n C1 H12 TRS sing 371 n n C2 O2 TRS sing 372 n n C2 H21 TRS sing 373 n n C2 H22 TRS sing 374 n n C3 O3 TRS sing 375 n n C3 H31 TRS sing 376 n n C3 H32 TRS sing 377 n n N HN1 TRS sing 378 n n N HN2 TRS sing 379 n n N HN3 TRS sing 380 n n O1 HO1 TRS sing 381 n n O2 HO2 TRS sing 382 n n O3 HO3 TRS sing 383 n n # _atom_sites.entry_id 5QFS _atom_sites.fract_transf_matrix[1][1] 0.01104 _atom_sites.fract_transf_matrix[1][2] 0.006374 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JJY A 1 401 1 JJY LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 39 HOH HOH . D 4 HOH A 2 502 125 HOH HOH . D 4 HOH A 3 503 92 HOH HOH . D 4 HOH A 4 504 7 HOH HOH . D 4 HOH A 5 505 19 HOH HOH . D 4 HOH A 6 506 97 HOH HOH . D 4 HOH A 7 507 163 HOH HOH . D 4 HOH A 8 508 5 HOH HOH . D 4 HOH A 9 509 99 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 177 HOH HOH . D 4 HOH A 12 512 158 HOH HOH . D 4 HOH A 13 513 137 HOH HOH . D 4 HOH A 14 514 175 HOH HOH . D 4 HOH A 15 515 57 HOH HOH . D 4 HOH A 16 516 17 HOH HOH . D 4 HOH A 17 517 165 HOH HOH . D 4 HOH A 18 518 21 HOH HOH . D 4 HOH A 19 519 112 HOH HOH . D 4 HOH A 20 520 101 HOH HOH . D 4 HOH A 21 521 6 HOH HOH . D 4 HOH A 22 522 37 HOH HOH . D 4 HOH A 23 523 105 HOH HOH . D 4 HOH A 24 524 10 HOH HOH . D 4 HOH A 25 525 64 HOH HOH . D 4 HOH A 26 526 13 HOH HOH . D 4 HOH A 27 527 58 HOH HOH . D 4 HOH A 28 528 30 HOH HOH . D 4 HOH A 29 529 4 HOH HOH . D 4 HOH A 30 530 59 HOH HOH . D 4 HOH A 31 531 146 HOH HOH . D 4 HOH A 32 532 33 HOH HOH . D 4 HOH A 33 533 169 HOH HOH . D 4 HOH A 34 534 56 HOH HOH . D 4 HOH A 35 535 36 HOH HOH . D 4 HOH A 36 536 25 HOH HOH . D 4 HOH A 37 537 40 HOH HOH . D 4 HOH A 38 538 93 HOH HOH . D 4 HOH A 39 539 3 HOH HOH . D 4 HOH A 40 540 155 HOH HOH . D 4 HOH A 41 541 12 HOH HOH . D 4 HOH A 42 542 44 HOH HOH . D 4 HOH A 43 543 84 HOH HOH . D 4 HOH A 44 544 2 HOH HOH . D 4 HOH A 45 545 139 HOH HOH . D 4 HOH A 46 546 76 HOH HOH . D 4 HOH A 47 547 100 HOH HOH . D 4 HOH A 48 548 16 HOH HOH . D 4 HOH A 49 549 142 HOH HOH . D 4 HOH A 50 550 170 HOH HOH . D 4 HOH A 51 551 80 HOH HOH . D 4 HOH A 52 552 156 HOH HOH . D 4 HOH A 53 553 41 HOH HOH . D 4 HOH A 54 554 31 HOH HOH . D 4 HOH A 55 555 53 HOH HOH . D 4 HOH A 56 556 63 HOH HOH . D 4 HOH A 57 557 60 HOH HOH . D 4 HOH A 58 558 52 HOH HOH . D 4 HOH A 59 559 27 HOH HOH . D 4 HOH A 60 560 73 HOH HOH . D 4 HOH A 61 561 152 HOH HOH . D 4 HOH A 62 562 167 HOH HOH . D 4 HOH A 63 563 11 HOH HOH . D 4 HOH A 64 564 129 HOH HOH . D 4 HOH A 65 565 90 HOH HOH . D 4 HOH A 66 566 144 HOH HOH . D 4 HOH A 67 567 48 HOH HOH . D 4 HOH A 68 568 147 HOH HOH . D 4 HOH A 69 569 8 HOH HOH . D 4 HOH A 70 570 134 HOH HOH . D 4 HOH A 71 571 74 HOH HOH . D 4 HOH A 72 572 45 HOH HOH . D 4 HOH A 73 573 82 HOH HOH . D 4 HOH A 74 574 103 HOH HOH . D 4 HOH A 75 575 1 HOH HOH . D 4 HOH A 76 576 24 HOH HOH . D 4 HOH A 77 577 32 HOH HOH . D 4 HOH A 78 578 136 HOH HOH . D 4 HOH A 79 579 9 HOH HOH . D 4 HOH A 80 580 68 HOH HOH . D 4 HOH A 81 581 35 HOH HOH . D 4 HOH A 82 582 23 HOH HOH . D 4 HOH A 83 583 42 HOH HOH . D 4 HOH A 84 584 43 HOH HOH . D 4 HOH A 85 585 78 HOH HOH . D 4 HOH A 86 586 157 HOH HOH . D 4 HOH A 87 587 83 HOH HOH . D 4 HOH A 88 588 72 HOH HOH . D 4 HOH A 89 589 46 HOH HOH . D 4 HOH A 90 590 160 HOH HOH . D 4 HOH A 91 591 51 HOH HOH . D 4 HOH A 92 592 69 HOH HOH . D 4 HOH A 93 593 66 HOH HOH . D 4 HOH A 94 594 15 HOH HOH . D 4 HOH A 95 595 162 HOH HOH . D 4 HOH A 96 596 70 HOH HOH . D 4 HOH A 97 597 20 HOH HOH . D 4 HOH A 98 598 159 HOH HOH . D 4 HOH A 99 599 113 HOH HOH . D 4 HOH A 100 600 71 HOH HOH . D 4 HOH A 101 601 22 HOH HOH . D 4 HOH A 102 602 104 HOH HOH . D 4 HOH A 103 603 34 HOH HOH . D 4 HOH A 104 604 106 HOH HOH . D 4 HOH A 105 605 89 HOH HOH . D 4 HOH A 106 606 95 HOH HOH . D 4 HOH A 107 607 107 HOH HOH . D 4 HOH A 108 608 55 HOH HOH . D 4 HOH A 109 609 87 HOH HOH . D 4 HOH A 110 610 166 HOH HOH . D 4 HOH A 111 611 50 HOH HOH . D 4 HOH A 112 612 14 HOH HOH . D 4 HOH A 113 613 121 HOH HOH . D 4 HOH A 114 614 81 HOH HOH . D 4 HOH A 115 615 91 HOH HOH . D 4 HOH A 116 616 77 HOH HOH . D 4 HOH A 117 617 150 HOH HOH . D 4 HOH A 118 618 18 HOH HOH . D 4 HOH A 119 619 116 HOH HOH . D 4 HOH A 120 620 109 HOH HOH . D 4 HOH A 121 621 47 HOH HOH . D 4 HOH A 122 622 123 HOH HOH . D 4 HOH A 123 623 110 HOH HOH . D 4 HOH A 124 624 79 HOH HOH . D 4 HOH A 125 625 153 HOH HOH . D 4 HOH A 126 626 127 HOH HOH . D 4 HOH A 127 627 143 HOH HOH . D 4 HOH A 128 628 126 HOH HOH . D 4 HOH A 129 629 118 HOH HOH . D 4 HOH A 130 630 135 HOH HOH . D 4 HOH A 131 631 124 HOH HOH . D 4 HOH A 132 632 130 HOH HOH . D 4 HOH A 133 633 133 HOH HOH . D 4 HOH A 134 634 49 HOH HOH . D 4 HOH A 135 635 154 HOH HOH . D 4 HOH A 136 636 38 HOH HOH . D 4 HOH A 137 637 138 HOH HOH . D 4 HOH A 138 638 88 HOH HOH . D 4 HOH A 139 639 102 HOH HOH . D 4 HOH A 140 640 168 HOH HOH . D 4 HOH A 141 641 28 HOH HOH . D 4 HOH A 142 642 119 HOH HOH . D 4 HOH A 143 643 98 HOH HOH . D 4 HOH A 144 644 108 HOH HOH . D 4 HOH A 145 645 86 HOH HOH . D 4 HOH A 146 646 96 HOH HOH . D 4 HOH A 147 647 176 HOH HOH . D 4 HOH A 148 648 54 HOH HOH . D 4 HOH A 149 649 62 HOH HOH . D 4 HOH A 150 650 111 HOH HOH . D 4 HOH A 151 651 128 HOH HOH . D 4 HOH A 152 652 178 HOH HOH . D 4 HOH A 153 653 131 HOH HOH . D 4 HOH A 154 654 114 HOH HOH . D 4 HOH A 155 655 132 HOH HOH . D 4 HOH A 156 656 174 HOH HOH . D 4 HOH A 157 657 67 HOH HOH . D 4 HOH A 158 658 29 HOH HOH . D 4 HOH A 159 659 65 HOH HOH . D 4 HOH A 160 660 179 HOH HOH . D 4 HOH A 161 661 85 HOH HOH . D 4 HOH A 162 662 94 HOH HOH . D 4 HOH A 163 663 181 HOH HOH . D 4 HOH A 164 664 149 HOH HOH . D 4 HOH A 165 665 164 HOH HOH . D 4 HOH A 166 666 120 HOH HOH . D 4 HOH A 167 667 161 HOH HOH . D 4 HOH A 168 668 145 HOH HOH . D 4 HOH A 169 669 140 HOH HOH . D 4 HOH A 170 670 180 HOH HOH . D 4 HOH A 171 671 115 HOH HOH . D 4 HOH A 172 672 61 HOH HOH . D 4 HOH A 173 673 173 HOH HOH . D 4 HOH A 174 674 148 HOH HOH . D 4 HOH A 175 675 141 HOH HOH . D 4 HOH A 176 676 151 HOH HOH . D 4 HOH A 177 677 172 HOH HOH . D 4 HOH A 178 678 171 HOH HOH . D 4 HOH A 179 679 75 HOH HOH . D 4 HOH A 180 680 122 HOH HOH . D 4 HOH A 181 681 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 21.84 -41.378 -22.836 1 39.05 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 21.271 -40.307 -21.909 1 46.9 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 21.228 -41.319 -24.202 1 69.87 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 21.605 -42.742 -22.271 1 66.44 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 23.31 -41.157 -22.956 1 80.54 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 22.311 -39.413 -21.569 1 163.13 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 21.414 -40.007 -24.696 1 105.9 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 22.145 -42.72 -21.023 1 38.49 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 20.875 -40.779 -21.008 1 56.28 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 20.47 -39.77 -22.422 1 56.28 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 20.164 -41.553 -24.134 1 83.84 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 21.72 -42.044 -24.853 1 83.84 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 20.538 -42.965 -22.202 1 79.73 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 22.1 -43.51 -22.868 1 79.73 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 23.747 -41.23 -22.023 1 96.65 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 23.716 -41.871 -23.583 1 96.65 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 23.486 -40.216 -23.346 1 96.65 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 21.967 -38.726 -20.981 1 195.75 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 21.028 -39.937 -25.58 1 127.08 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 22.523 -41.846 -20.851 1 46.18 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #