data_5QFU # _model_server_result.job_id Ff2aym-0mPVA7e2iJZiBqQ _model_server_result.datetime_utc '2024-10-18 04:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qfu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5QFU # _exptl.entry_id 5QFU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QFU _cell.length_a 89.884 _cell.length_b 89.884 _cell.length_c 106.688 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 370 n n C C2 TRS sing 371 n n C C3 TRS sing 372 n n C N TRS sing 373 n n C1 O1 TRS sing 374 n n C1 H11 TRS sing 375 n n C1 H12 TRS sing 376 n n C2 O2 TRS sing 377 n n C2 H21 TRS sing 378 n n C2 H22 TRS sing 379 n n C3 O3 TRS sing 380 n n C3 H31 TRS sing 381 n n C3 H32 TRS sing 382 n n N HN1 TRS sing 383 n n N HN2 TRS sing 384 n n N HN3 TRS sing 385 n n O1 HO1 TRS sing 386 n n O2 HO2 TRS sing 387 n n O3 HO3 TRS sing 388 n n # _atom_sites.entry_id 5QFU _atom_sites.fract_transf_matrix[1][1] 0.011125 _atom_sites.fract_transf_matrix[1][2] 0.006423 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JO7 A 1 401 1 JO7 LIG . C 2 JO7 A 1 402 2 JO7 LIG . D 3 TRS A 1 403 500 TRS TRS . E 4 HOH A 1 501 244 HOH HOH . E 4 HOH A 2 502 236 HOH HOH . E 4 HOH A 3 503 129 HOH HOH . E 4 HOH A 4 504 187 HOH HOH . E 4 HOH A 5 505 167 HOH HOH . E 4 HOH A 6 506 177 HOH HOH . E 4 HOH A 7 507 65 HOH HOH . E 4 HOH A 8 508 204 HOH HOH . E 4 HOH A 9 509 210 HOH HOH . E 4 HOH A 10 510 158 HOH HOH . E 4 HOH A 11 511 174 HOH HOH . E 4 HOH A 12 512 70 HOH HOH . E 4 HOH A 13 513 175 HOH HOH . E 4 HOH A 14 514 181 HOH HOH . E 4 HOH A 15 515 217 HOH HOH . E 4 HOH A 16 516 146 HOH HOH . E 4 HOH A 17 517 69 HOH HOH . E 4 HOH A 18 518 100 HOH HOH . E 4 HOH A 19 519 142 HOH HOH . E 4 HOH A 20 520 58 HOH HOH . E 4 HOH A 21 521 128 HOH HOH . E 4 HOH A 22 522 190 HOH HOH . E 4 HOH A 23 523 166 HOH HOH . E 4 HOH A 24 524 117 HOH HOH . E 4 HOH A 25 525 257 HOH HOH . E 4 HOH A 26 526 19 HOH HOH . E 4 HOH A 27 527 112 HOH HOH . E 4 HOH A 28 528 179 HOH HOH . E 4 HOH A 29 529 139 HOH HOH . E 4 HOH A 30 530 62 HOH HOH . E 4 HOH A 31 531 196 HOH HOH . E 4 HOH A 32 532 21 HOH HOH . E 4 HOH A 33 533 221 HOH HOH . E 4 HOH A 34 534 33 HOH HOH . E 4 HOH A 35 535 215 HOH HOH . E 4 HOH A 36 536 75 HOH HOH . E 4 HOH A 37 537 176 HOH HOH . E 4 HOH A 38 538 26 HOH HOH . E 4 HOH A 39 539 156 HOH HOH . E 4 HOH A 40 540 57 HOH HOH . E 4 HOH A 41 541 122 HOH HOH . E 4 HOH A 42 542 25 HOH HOH . E 4 HOH A 43 543 3 HOH HOH . E 4 HOH A 44 544 252 HOH HOH . E 4 HOH A 45 545 17 HOH HOH . E 4 HOH A 46 546 91 HOH HOH . E 4 HOH A 47 547 126 HOH HOH . E 4 HOH A 48 548 116 HOH HOH . E 4 HOH A 49 549 5 HOH HOH . E 4 HOH A 50 550 259 HOH HOH . E 4 HOH A 51 551 92 HOH HOH . E 4 HOH A 52 552 8 HOH HOH . E 4 HOH A 53 553 87 HOH HOH . E 4 HOH A 54 554 30 HOH HOH . E 4 HOH A 55 555 107 HOH HOH . E 4 HOH A 56 556 205 HOH HOH . E 4 HOH A 57 557 148 HOH HOH . E 4 HOH A 58 558 114 HOH HOH . E 4 HOH A 59 559 268 HOH HOH . E 4 HOH A 60 560 76 HOH HOH . E 4 HOH A 61 561 4 HOH HOH . E 4 HOH A 62 562 54 HOH HOH . E 4 HOH A 63 563 164 HOH HOH . E 4 HOH A 64 564 41 HOH HOH . E 4 HOH A 65 565 127 HOH HOH . E 4 HOH A 66 566 77 HOH HOH . E 4 HOH A 67 567 40 HOH HOH . E 4 HOH A 68 568 42 HOH HOH . E 4 HOH A 69 569 218 HOH HOH . E 4 HOH A 70 570 13 HOH HOH . E 4 HOH A 71 571 182 HOH HOH . E 4 HOH A 72 572 104 HOH HOH . E 4 HOH A 73 573 80 HOH HOH . E 4 HOH A 74 574 24 HOH HOH . E 4 HOH A 75 575 135 HOH HOH . E 4 HOH A 76 576 12 HOH HOH . E 4 HOH A 77 577 1 HOH HOH . E 4 HOH A 78 578 22 HOH HOH . E 4 HOH A 79 579 11 HOH HOH . E 4 HOH A 80 580 37 HOH HOH . E 4 HOH A 81 581 59 HOH HOH . E 4 HOH A 82 582 10 HOH HOH . E 4 HOH A 83 583 102 HOH HOH . E 4 HOH A 84 584 161 HOH HOH . E 4 HOH A 85 585 6 HOH HOH . E 4 HOH A 86 586 271 HOH HOH . E 4 HOH A 87 587 27 HOH HOH . E 4 HOH A 88 588 95 HOH HOH . E 4 HOH A 89 589 16 HOH HOH . E 4 HOH A 90 590 200 HOH HOH . E 4 HOH A 91 591 14 HOH HOH . E 4 HOH A 92 592 258 HOH HOH . E 4 HOH A 93 593 36 HOH HOH . E 4 HOH A 94 594 253 HOH HOH . E 4 HOH A 95 595 86 HOH HOH . E 4 HOH A 96 596 225 HOH HOH . E 4 HOH A 97 597 124 HOH HOH . E 4 HOH A 98 598 68 HOH HOH . E 4 HOH A 99 599 150 HOH HOH . E 4 HOH A 100 600 32 HOH HOH . E 4 HOH A 101 601 9 HOH HOH . E 4 HOH A 102 602 98 HOH HOH . E 4 HOH A 103 603 73 HOH HOH . E 4 HOH A 104 604 211 HOH HOH . E 4 HOH A 105 605 99 HOH HOH . E 4 HOH A 106 606 79 HOH HOH . E 4 HOH A 107 607 93 HOH HOH . E 4 HOH A 108 608 31 HOH HOH . E 4 HOH A 109 609 52 HOH HOH . E 4 HOH A 110 610 44 HOH HOH . E 4 HOH A 111 611 2 HOH HOH . E 4 HOH A 112 612 214 HOH HOH . E 4 HOH A 113 613 230 HOH HOH . E 4 HOH A 114 614 144 HOH HOH . E 4 HOH A 115 615 56 HOH HOH . E 4 HOH A 116 616 136 HOH HOH . E 4 HOH A 117 617 197 HOH HOH . E 4 HOH A 118 618 178 HOH HOH . E 4 HOH A 119 619 152 HOH HOH . E 4 HOH A 120 620 61 HOH HOH . E 4 HOH A 121 621 60 HOH HOH . E 4 HOH A 122 622 18 HOH HOH . E 4 HOH A 123 623 97 HOH HOH . E 4 HOH A 124 624 38 HOH HOH . E 4 HOH A 125 625 43 HOH HOH . E 4 HOH A 126 626 82 HOH HOH . E 4 HOH A 127 627 23 HOH HOH . E 4 HOH A 128 628 151 HOH HOH . E 4 HOH A 129 629 165 HOH HOH . E 4 HOH A 130 630 84 HOH HOH . E 4 HOH A 131 631 53 HOH HOH . E 4 HOH A 132 632 81 HOH HOH . E 4 HOH A 133 633 106 HOH HOH . E 4 HOH A 134 634 246 HOH HOH . E 4 HOH A 135 635 240 HOH HOH . E 4 HOH A 136 636 39 HOH HOH . E 4 HOH A 137 637 118 HOH HOH . E 4 HOH A 138 638 185 HOH HOH . E 4 HOH A 139 639 235 HOH HOH . E 4 HOH A 140 640 46 HOH HOH . E 4 HOH A 141 641 216 HOH HOH . E 4 HOH A 142 642 66 HOH HOH . E 4 HOH A 143 643 34 HOH HOH . E 4 HOH A 144 644 94 HOH HOH . E 4 HOH A 145 645 149 HOH HOH . E 4 HOH A 146 646 188 HOH HOH . E 4 HOH A 147 647 7 HOH HOH . E 4 HOH A 148 648 265 HOH HOH . E 4 HOH A 149 649 247 HOH HOH . E 4 HOH A 150 650 234 HOH HOH . E 4 HOH A 151 651 90 HOH HOH . E 4 HOH A 152 652 109 HOH HOH . E 4 HOH A 153 653 20 HOH HOH . E 4 HOH A 154 654 154 HOH HOH . E 4 HOH A 155 655 195 HOH HOH . E 4 HOH A 156 656 15 HOH HOH . E 4 HOH A 157 657 153 HOH HOH . E 4 HOH A 158 658 111 HOH HOH . E 4 HOH A 159 659 208 HOH HOH . E 4 HOH A 160 660 227 HOH HOH . E 4 HOH A 161 661 45 HOH HOH . E 4 HOH A 162 662 28 HOH HOH . E 4 HOH A 163 663 198 HOH HOH . E 4 HOH A 164 664 78 HOH HOH . E 4 HOH A 165 665 67 HOH HOH . E 4 HOH A 166 666 212 HOH HOH . E 4 HOH A 167 667 130 HOH HOH . E 4 HOH A 168 668 89 HOH HOH . E 4 HOH A 169 669 35 HOH HOH . E 4 HOH A 170 670 51 HOH HOH . E 4 HOH A 171 671 125 HOH HOH . E 4 HOH A 172 672 49 HOH HOH . E 4 HOH A 173 673 241 HOH HOH . E 4 HOH A 174 674 72 HOH HOH . E 4 HOH A 175 675 180 HOH HOH . E 4 HOH A 176 676 264 HOH HOH . E 4 HOH A 177 677 48 HOH HOH . E 4 HOH A 178 678 141 HOH HOH . E 4 HOH A 179 679 157 HOH HOH . E 4 HOH A 180 680 219 HOH HOH . E 4 HOH A 181 681 251 HOH HOH . E 4 HOH A 182 682 110 HOH HOH . E 4 HOH A 183 683 186 HOH HOH . E 4 HOH A 184 684 232 HOH HOH . E 4 HOH A 185 685 145 HOH HOH . E 4 HOH A 186 686 123 HOH HOH . E 4 HOH A 187 687 83 HOH HOH . E 4 HOH A 188 688 131 HOH HOH . E 4 HOH A 189 689 243 HOH HOH . E 4 HOH A 190 690 160 HOH HOH . E 4 HOH A 191 691 162 HOH HOH . E 4 HOH A 192 692 168 HOH HOH . E 4 HOH A 193 693 50 HOH HOH . E 4 HOH A 194 694 194 HOH HOH . E 4 HOH A 195 695 105 HOH HOH . E 4 HOH A 196 696 237 HOH HOH . E 4 HOH A 197 697 108 HOH HOH . E 4 HOH A 198 698 155 HOH HOH . E 4 HOH A 199 699 163 HOH HOH . E 4 HOH A 200 700 207 HOH HOH . E 4 HOH A 201 701 193 HOH HOH . E 4 HOH A 202 702 202 HOH HOH . E 4 HOH A 203 703 172 HOH HOH . E 4 HOH A 204 704 248 HOH HOH . E 4 HOH A 205 705 192 HOH HOH . E 4 HOH A 206 706 47 HOH HOH . E 4 HOH A 207 707 55 HOH HOH . E 4 HOH A 208 708 103 HOH HOH . E 4 HOH A 209 709 132 HOH HOH . E 4 HOH A 210 710 191 HOH HOH . E 4 HOH A 211 711 159 HOH HOH . E 4 HOH A 212 712 203 HOH HOH . E 4 HOH A 213 713 263 HOH HOH . E 4 HOH A 214 714 260 HOH HOH . E 4 HOH A 215 715 199 HOH HOH . E 4 HOH A 216 716 143 HOH HOH . E 4 HOH A 217 717 137 HOH HOH . E 4 HOH A 218 718 220 HOH HOH . E 4 HOH A 219 719 96 HOH HOH . E 4 HOH A 220 720 101 HOH HOH . E 4 HOH A 221 721 223 HOH HOH . E 4 HOH A 222 722 29 HOH HOH . E 4 HOH A 223 723 242 HOH HOH . E 4 HOH A 224 724 71 HOH HOH . E 4 HOH A 225 725 262 HOH HOH . E 4 HOH A 226 726 115 HOH HOH . E 4 HOH A 227 727 226 HOH HOH . E 4 HOH A 228 728 74 HOH HOH . E 4 HOH A 229 729 255 HOH HOH . E 4 HOH A 230 730 113 HOH HOH . E 4 HOH A 231 731 119 HOH HOH . E 4 HOH A 232 732 120 HOH HOH . E 4 HOH A 233 733 209 HOH HOH . E 4 HOH A 234 734 254 HOH HOH . E 4 HOH A 235 735 85 HOH HOH . E 4 HOH A 236 736 222 HOH HOH . E 4 HOH A 237 737 250 HOH HOH . E 4 HOH A 238 738 138 HOH HOH . E 4 HOH A 239 739 245 HOH HOH . E 4 HOH A 240 740 134 HOH HOH . E 4 HOH A 241 741 206 HOH HOH . E 4 HOH A 242 742 133 HOH HOH . E 4 HOH A 243 743 63 HOH HOH . E 4 HOH A 244 744 238 HOH HOH . E 4 HOH A 245 745 183 HOH HOH . E 4 HOH A 246 746 88 HOH HOH . E 4 HOH A 247 747 231 HOH HOH . E 4 HOH A 248 748 121 HOH HOH . E 4 HOH A 249 749 233 HOH HOH . E 4 HOH A 250 750 170 HOH HOH . E 4 HOH A 251 751 256 HOH HOH . E 4 HOH A 252 752 239 HOH HOH . E 4 HOH A 253 753 269 HOH HOH . E 4 HOH A 254 754 147 HOH HOH . E 4 HOH A 255 755 270 HOH HOH . E 4 HOH A 256 756 267 HOH HOH . E 4 HOH A 257 757 184 HOH HOH . E 4 HOH A 258 758 266 HOH HOH . E 4 HOH A 259 759 228 HOH HOH . E 4 HOH A 260 760 171 HOH HOH . E 4 HOH A 261 761 64 HOH HOH . E 4 HOH A 262 762 213 HOH HOH . E 4 HOH A 263 763 173 HOH HOH . E 4 HOH A 264 764 189 HOH HOH . E 4 HOH A 265 765 249 HOH HOH . E 4 HOH A 266 766 261 HOH HOH . E 4 HOH A 267 767 140 HOH HOH . E 4 HOH A 268 768 169 HOH HOH . E 4 HOH A 269 769 224 HOH HOH . E 4 HOH A 270 770 229 HOH HOH . E 4 HOH A 271 771 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 -43.822 -2.097 -4.922 1 19.3 ? C TRS 403 A 1 HETATM 2 C C1 TRS . . . D 3 -44.994 -1.991 -3.965 1 48.55 ? C1 TRS 403 A 1 HETATM 3 C C2 TRS . . . D 3 -44.182 -2.589 -6.285 1 99.01 ? C2 TRS 403 A 1 HETATM 4 C C3 TRS . . . D 3 -42.728 -2.932 -4.322 1 78.23 ? C3 TRS 403 A 1 HETATM 5 N N TRS . . . D 3 -43.247 -0.715 -5.032 1 64.17 ? N TRS 403 A 1 HETATM 6 O O1 TRS . . . D 3 -45.194 -0.649 -3.613 1 54.23 ? O1 TRS 403 A 1 HETATM 7 O O2 TRS . . . D 3 -45.205 -1.732 -6.734 1 49.64 ? O2 TRS 403 A 1 HETATM 8 O O3 TRS . . . D 3 -42.478 -2.404 -3.099 1 35 ? O3 TRS 403 A 1 HETATM 9 H H11 TRS . . . D 3 -44.784 -2.574 -3.066 1 58.26 ? H11 TRS 403 A 1 HETATM 10 H H12 TRS . . . D 3 -45.894 -2.378 -4.448 1 58.26 ? H12 TRS 403 A 1 HETATM 11 H H21 TRS . . . D 3 -44.526 -3.623 -6.219 1 118.81 ? H21 TRS 403 A 1 HETATM 12 H H22 TRS . . . D 3 -43.305 -2.537 -6.934 1 118.81 ? H22 TRS 403 A 1 HETATM 13 H H31 TRS . . . D 3 -43.043 -3.972 -4.212 1 93.87 ? H31 TRS 403 A 1 HETATM 14 H H32 TRS . . . D 3 -41.822 -2.888 -4.93 1 93.87 ? H32 TRS 403 A 1 HETATM 15 H HN1 TRS . . . D 3 -42.983 -0.376 -4.093 1 77.01 ? HN1 TRS 403 A 1 HETATM 16 H HN2 TRS . . . D 3 -42.411 -0.737 -5.638 1 77.01 ? HN2 TRS 403 A 1 HETATM 17 H HN3 TRS . . . D 3 -43.952 -0.08 -5.441 1 77.01 ? HN3 TRS 403 A 1 HETATM 18 H HO1 TRS . . . D 3 -45.942 -0.584 -3.003 1 65.07 ? HO1 TRS 403 A 1 HETATM 19 H HO2 TRS . . . D 3 -45.485 -2 -7.62 1 59.57 ? HO2 TRS 403 A 1 HETATM 20 H HO3 TRS . . . D 3 -43.062 -1.648 -2.949 1 41.99 ? HO3 TRS 403 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #