data_5QFV # _model_server_result.job_id B9m2kXzGgSNSfs4G--KPYQ _model_server_result.datetime_utc '2025-08-31 12:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qfv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QFV # _exptl.entry_id 5QFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QFV _cell.length_a 89.739 _cell.length_b 89.739 _cell.length_c 106.545 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 373 n n C C2 TRS sing 374 n n C C3 TRS sing 375 n n C N TRS sing 376 n n C1 O1 TRS sing 377 n n C1 H11 TRS sing 378 n n C1 H12 TRS sing 379 n n C2 O2 TRS sing 380 n n C2 H21 TRS sing 381 n n C2 H22 TRS sing 382 n n C3 O3 TRS sing 383 n n C3 H31 TRS sing 384 n n C3 H32 TRS sing 385 n n N HN1 TRS sing 386 n n N HN2 TRS sing 387 n n N HN3 TRS sing 388 n n O1 HO1 TRS sing 389 n n O2 HO2 TRS sing 390 n n O3 HO3 TRS sing 391 n n # _atom_sites.entry_id 5QFV _atom_sites.fract_transf_matrix[1][1] 0.011143 _atom_sites.fract_transf_matrix[1][2] 0.006434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JK7 A 1 401 1 JK7 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 120 HOH HOH . D 4 HOH A 2 502 115 HOH HOH . D 4 HOH A 3 503 92 HOH HOH . D 4 HOH A 4 504 170 HOH HOH . D 4 HOH A 5 505 173 HOH HOH . D 4 HOH A 6 506 31 HOH HOH . D 4 HOH A 7 507 109 HOH HOH . D 4 HOH A 8 508 112 HOH HOH . D 4 HOH A 9 509 221 HOH HOH . D 4 HOH A 10 510 155 HOH HOH . D 4 HOH A 11 511 119 HOH HOH . D 4 HOH A 12 512 57 HOH HOH . D 4 HOH A 13 513 123 HOH HOH . D 4 HOH A 14 514 83 HOH HOH . D 4 HOH A 15 515 231 HOH HOH . D 4 HOH A 16 516 28 HOH HOH . D 4 HOH A 17 517 70 HOH HOH . D 4 HOH A 18 518 223 HOH HOH . D 4 HOH A 19 519 159 HOH HOH . D 4 HOH A 20 520 126 HOH HOH . D 4 HOH A 21 521 62 HOH HOH . D 4 HOH A 22 522 11 HOH HOH . D 4 HOH A 23 523 65 HOH HOH . D 4 HOH A 24 524 125 HOH HOH . D 4 HOH A 25 525 85 HOH HOH . D 4 HOH A 26 526 20 HOH HOH . D 4 HOH A 27 527 122 HOH HOH . D 4 HOH A 28 528 69 HOH HOH . D 4 HOH A 29 529 198 HOH HOH . D 4 HOH A 30 530 117 HOH HOH . D 4 HOH A 31 531 232 HOH HOH . D 4 HOH A 32 532 246 HOH HOH . D 4 HOH A 33 533 141 HOH HOH . D 4 HOH A 34 534 81 HOH HOH . D 4 HOH A 35 535 131 HOH HOH . D 4 HOH A 36 536 135 HOH HOH . D 4 HOH A 37 537 93 HOH HOH . D 4 HOH A 38 538 19 HOH HOH . D 4 HOH A 39 539 240 HOH HOH . D 4 HOH A 40 540 156 HOH HOH . D 4 HOH A 41 541 192 HOH HOH . D 4 HOH A 42 542 129 HOH HOH . D 4 HOH A 43 543 96 HOH HOH . D 4 HOH A 44 544 41 HOH HOH . D 4 HOH A 45 545 132 HOH HOH . D 4 HOH A 46 546 99 HOH HOH . D 4 HOH A 47 547 56 HOH HOH . D 4 HOH A 48 548 106 HOH HOH . D 4 HOH A 49 549 175 HOH HOH . D 4 HOH A 50 550 24 HOH HOH . D 4 HOH A 51 551 6 HOH HOH . D 4 HOH A 52 552 35 HOH HOH . D 4 HOH A 53 553 17 HOH HOH . D 4 HOH A 54 554 137 HOH HOH . D 4 HOH A 55 555 39 HOH HOH . D 4 HOH A 56 556 171 HOH HOH . D 4 HOH A 57 557 1 HOH HOH . D 4 HOH A 58 558 26 HOH HOH . D 4 HOH A 59 559 21 HOH HOH . D 4 HOH A 60 560 212 HOH HOH . D 4 HOH A 61 561 124 HOH HOH . D 4 HOH A 62 562 5 HOH HOH . D 4 HOH A 63 563 140 HOH HOH . D 4 HOH A 64 564 111 HOH HOH . D 4 HOH A 65 565 88 HOH HOH . D 4 HOH A 66 566 37 HOH HOH . D 4 HOH A 67 567 25 HOH HOH . D 4 HOH A 68 568 4 HOH HOH . D 4 HOH A 69 569 90 HOH HOH . D 4 HOH A 70 570 8 HOH HOH . D 4 HOH A 71 571 45 HOH HOH . D 4 HOH A 72 572 76 HOH HOH . D 4 HOH A 73 573 87 HOH HOH . D 4 HOH A 74 574 77 HOH HOH . D 4 HOH A 75 575 72 HOH HOH . D 4 HOH A 76 576 186 HOH HOH . D 4 HOH A 77 577 52 HOH HOH . D 4 HOH A 78 578 188 HOH HOH . D 4 HOH A 79 579 79 HOH HOH . D 4 HOH A 80 580 160 HOH HOH . D 4 HOH A 81 581 211 HOH HOH . D 4 HOH A 82 582 146 HOH HOH . D 4 HOH A 83 583 105 HOH HOH . D 4 HOH A 84 584 23 HOH HOH . D 4 HOH A 85 585 238 HOH HOH . D 4 HOH A 86 586 9 HOH HOH . D 4 HOH A 87 587 58 HOH HOH . D 4 HOH A 88 588 142 HOH HOH . D 4 HOH A 89 589 12 HOH HOH . D 4 HOH A 90 590 2 HOH HOH . D 4 HOH A 91 591 53 HOH HOH . D 4 HOH A 92 592 97 HOH HOH . D 4 HOH A 93 593 104 HOH HOH . D 4 HOH A 94 594 174 HOH HOH . D 4 HOH A 95 595 196 HOH HOH . D 4 HOH A 96 596 15 HOH HOH . D 4 HOH A 97 597 10 HOH HOH . D 4 HOH A 98 598 3 HOH HOH . D 4 HOH A 99 599 68 HOH HOH . D 4 HOH A 100 600 226 HOH HOH . D 4 HOH A 101 601 94 HOH HOH . D 4 HOH A 102 602 169 HOH HOH . D 4 HOH A 103 603 40 HOH HOH . D 4 HOH A 104 604 214 HOH HOH . D 4 HOH A 105 605 145 HOH HOH . D 4 HOH A 106 606 91 HOH HOH . D 4 HOH A 107 607 13 HOH HOH . D 4 HOH A 108 608 203 HOH HOH . D 4 HOH A 109 609 216 HOH HOH . D 4 HOH A 110 610 36 HOH HOH . D 4 HOH A 111 611 22 HOH HOH . D 4 HOH A 112 612 18 HOH HOH . D 4 HOH A 113 613 75 HOH HOH . D 4 HOH A 114 614 217 HOH HOH . D 4 HOH A 115 615 42 HOH HOH . D 4 HOH A 116 616 166 HOH HOH . D 4 HOH A 117 617 60 HOH HOH . D 4 HOH A 118 618 59 HOH HOH . D 4 HOH A 119 619 34 HOH HOH . D 4 HOH A 120 620 55 HOH HOH . D 4 HOH A 121 621 38 HOH HOH . D 4 HOH A 122 622 98 HOH HOH . D 4 HOH A 123 623 30 HOH HOH . D 4 HOH A 124 624 82 HOH HOH . D 4 HOH A 125 625 194 HOH HOH . D 4 HOH A 126 626 144 HOH HOH . D 4 HOH A 127 627 43 HOH HOH . D 4 HOH A 128 628 168 HOH HOH . D 4 HOH A 129 629 29 HOH HOH . D 4 HOH A 130 630 7 HOH HOH . D 4 HOH A 131 631 207 HOH HOH . D 4 HOH A 132 632 48 HOH HOH . D 4 HOH A 133 633 16 HOH HOH . D 4 HOH A 134 634 101 HOH HOH . D 4 HOH A 135 635 113 HOH HOH . D 4 HOH A 136 636 102 HOH HOH . D 4 HOH A 137 637 110 HOH HOH . D 4 HOH A 138 638 152 HOH HOH . D 4 HOH A 139 639 244 HOH HOH . D 4 HOH A 140 640 143 HOH HOH . D 4 HOH A 141 641 44 HOH HOH . D 4 HOH A 142 642 193 HOH HOH . D 4 HOH A 143 643 153 HOH HOH . D 4 HOH A 144 644 51 HOH HOH . D 4 HOH A 145 645 164 HOH HOH . D 4 HOH A 146 646 204 HOH HOH . D 4 HOH A 147 647 32 HOH HOH . D 4 HOH A 148 648 241 HOH HOH . D 4 HOH A 149 649 213 HOH HOH . D 4 HOH A 150 650 95 HOH HOH . D 4 HOH A 151 651 78 HOH HOH . D 4 HOH A 152 652 118 HOH HOH . D 4 HOH A 153 653 134 HOH HOH . D 4 HOH A 154 654 127 HOH HOH . D 4 HOH A 155 655 66 HOH HOH . D 4 HOH A 156 656 150 HOH HOH . D 4 HOH A 157 657 50 HOH HOH . D 4 HOH A 158 658 33 HOH HOH . D 4 HOH A 159 659 190 HOH HOH . D 4 HOH A 160 660 197 HOH HOH . D 4 HOH A 161 661 84 HOH HOH . D 4 HOH A 162 662 14 HOH HOH . D 4 HOH A 163 663 225 HOH HOH . D 4 HOH A 164 664 235 HOH HOH . D 4 HOH A 165 665 205 HOH HOH . D 4 HOH A 166 666 49 HOH HOH . D 4 HOH A 167 667 165 HOH HOH . D 4 HOH A 168 668 47 HOH HOH . D 4 HOH A 169 669 107 HOH HOH . D 4 HOH A 170 670 67 HOH HOH . D 4 HOH A 171 671 151 HOH HOH . D 4 HOH A 172 672 103 HOH HOH . D 4 HOH A 173 673 199 HOH HOH . D 4 HOH A 174 674 148 HOH HOH . D 4 HOH A 175 675 180 HOH HOH . D 4 HOH A 176 676 187 HOH HOH . D 4 HOH A 177 677 236 HOH HOH . D 4 HOH A 178 678 80 HOH HOH . D 4 HOH A 179 679 108 HOH HOH . D 4 HOH A 180 680 219 HOH HOH . D 4 HOH A 181 681 191 HOH HOH . D 4 HOH A 182 682 147 HOH HOH . D 4 HOH A 183 683 74 HOH HOH . D 4 HOH A 184 684 54 HOH HOH . D 4 HOH A 185 685 220 HOH HOH . D 4 HOH A 186 686 149 HOH HOH . D 4 HOH A 187 687 121 HOH HOH . D 4 HOH A 188 688 61 HOH HOH . D 4 HOH A 189 689 157 HOH HOH . D 4 HOH A 190 690 27 HOH HOH . D 4 HOH A 191 691 215 HOH HOH . D 4 HOH A 192 692 208 HOH HOH . D 4 HOH A 193 693 154 HOH HOH . D 4 HOH A 194 694 128 HOH HOH . D 4 HOH A 195 695 163 HOH HOH . D 4 HOH A 196 696 46 HOH HOH . D 4 HOH A 197 697 162 HOH HOH . D 4 HOH A 198 698 230 HOH HOH . D 4 HOH A 199 699 185 HOH HOH . D 4 HOH A 200 700 234 HOH HOH . D 4 HOH A 201 701 177 HOH HOH . D 4 HOH A 202 702 228 HOH HOH . D 4 HOH A 203 703 71 HOH HOH . D 4 HOH A 204 704 184 HOH HOH . D 4 HOH A 205 705 100 HOH HOH . D 4 HOH A 206 706 209 HOH HOH . D 4 HOH A 207 707 202 HOH HOH . D 4 HOH A 208 708 243 HOH HOH . D 4 HOH A 209 709 167 HOH HOH . D 4 HOH A 210 710 201 HOH HOH . D 4 HOH A 211 711 138 HOH HOH . D 4 HOH A 212 712 172 HOH HOH . D 4 HOH A 213 713 73 HOH HOH . D 4 HOH A 214 714 114 HOH HOH . D 4 HOH A 215 715 222 HOH HOH . D 4 HOH A 216 716 181 HOH HOH . D 4 HOH A 217 717 224 HOH HOH . D 4 HOH A 218 718 237 HOH HOH . D 4 HOH A 219 719 229 HOH HOH . D 4 HOH A 220 720 179 HOH HOH . D 4 HOH A 221 721 130 HOH HOH . D 4 HOH A 222 722 89 HOH HOH . D 4 HOH A 223 723 136 HOH HOH . D 4 HOH A 224 724 86 HOH HOH . D 4 HOH A 225 725 206 HOH HOH . D 4 HOH A 226 726 195 HOH HOH . D 4 HOH A 227 727 245 HOH HOH . D 4 HOH A 228 728 200 HOH HOH . D 4 HOH A 229 729 161 HOH HOH . D 4 HOH A 230 730 63 HOH HOH . D 4 HOH A 231 731 116 HOH HOH . D 4 HOH A 232 732 239 HOH HOH . D 4 HOH A 233 733 139 HOH HOH . D 4 HOH A 234 734 242 HOH HOH . D 4 HOH A 235 735 210 HOH HOH . D 4 HOH A 236 736 64 HOH HOH . D 4 HOH A 237 737 182 HOH HOH . D 4 HOH A 238 738 189 HOH HOH . D 4 HOH A 239 739 158 HOH HOH . D 4 HOH A 240 740 176 HOH HOH . D 4 HOH A 241 741 227 HOH HOH . D 4 HOH A 242 742 218 HOH HOH . D 4 HOH A 243 743 133 HOH HOH . D 4 HOH A 244 744 233 HOH HOH . D 4 HOH A 245 745 183 HOH HOH . D 4 HOH A 246 746 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.777 -2.133 -4.898 1 19.75 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -44.959 -2.037 -3.944 1 48.08 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.139 -2.627 -6.258 1 86.49 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.687 -2.968 -4.292 1 66.4 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.207 -0.755 -5.004 1 63.61 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.148 -0.688 -3.589 1 56.02 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.152 -1.751 -6.7 1 47.81 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.45 -2.435 -3.061 1 36.7 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.754 -2.629 -3.05 1 57.7 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.856 -2.419 -4.436 1 57.7 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.496 -3.657 -6.188 1 103.79 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.26 -2.589 -6.905 1 103.79 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -43 -4.009 -4.184 1 79.68 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.775 -2.922 -4.89 1 79.68 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.95 -0.416 -4.063 1 76.33 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.367 -0.775 -5.605 1 76.33 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.911 -0.122 -5.417 1 76.33 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.898 -0.616 -2.983 1 67.22 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.44 -2.012 -7.586 1 57.37 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -43.038 -1.68 -2.918 1 44.04 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #