data_5QFW # _model_server_result.job_id FmPz8iHC0I7W_s7VH498NA _model_server_result.datetime_utc '2025-07-27 20:40:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qfw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QFW # _exptl.entry_id 5QFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QFW _cell.length_a 89.784 _cell.length_b 89.784 _cell.length_c 106.469 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CB THR 165 A THR 165 1_555 A OE1 GLU 167 A GLU 167 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.508 ? covale ? covale2 A CB THR 165 A THR 165 1_555 A OE1 GLU 167 A GLU 167 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.508 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 367 n n C C2 TRS sing 368 n n C C3 TRS sing 369 n n C N TRS sing 370 n n C1 O1 TRS sing 371 n n C1 H11 TRS sing 372 n n C1 H12 TRS sing 373 n n C2 O2 TRS sing 374 n n C2 H21 TRS sing 375 n n C2 H22 TRS sing 376 n n C3 O3 TRS sing 377 n n C3 H31 TRS sing 378 n n C3 H32 TRS sing 379 n n N HN1 TRS sing 380 n n N HN2 TRS sing 381 n n N HN3 TRS sing 382 n n O1 HO1 TRS sing 383 n n O2 HO2 TRS sing 384 n n O3 HO3 TRS sing 385 n n # _atom_sites.entry_id 5QFW _atom_sites.fract_transf_matrix[1][1] 0.011138 _atom_sites.fract_transf_matrix[1][2] 0.00643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JKA A 1 401 2 JKA LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 138 HOH HOH . D 4 HOH A 2 502 188 HOH HOH . D 4 HOH A 3 503 38 HOH HOH . D 4 HOH A 4 504 85 HOH HOH . D 4 HOH A 5 505 187 HOH HOH . D 4 HOH A 6 506 219 HOH HOH . D 4 HOH A 7 507 183 HOH HOH . D 4 HOH A 8 508 72 HOH HOH . D 4 HOH A 9 509 228 HOH HOH . D 4 HOH A 10 510 223 HOH HOH . D 4 HOH A 11 511 139 HOH HOH . D 4 HOH A 12 512 75 HOH HOH . D 4 HOH A 13 513 125 HOH HOH . D 4 HOH A 14 514 58 HOH HOH . D 4 HOH A 15 515 149 HOH HOH . D 4 HOH A 16 516 111 HOH HOH . D 4 HOH A 17 517 123 HOH HOH . D 4 HOH A 18 518 47 HOH HOH . D 4 HOH A 19 519 161 HOH HOH . D 4 HOH A 20 520 90 HOH HOH . D 4 HOH A 21 521 169 HOH HOH . D 4 HOH A 22 522 32 HOH HOH . D 4 HOH A 23 523 31 HOH HOH . D 4 HOH A 24 524 134 HOH HOH . D 4 HOH A 25 525 129 HOH HOH . D 4 HOH A 26 526 84 HOH HOH . D 4 HOH A 27 527 233 HOH HOH . D 4 HOH A 28 528 114 HOH HOH . D 4 HOH A 29 529 86 HOH HOH . D 4 HOH A 30 530 63 HOH HOH . D 4 HOH A 31 531 21 HOH HOH . D 4 HOH A 32 532 19 HOH HOH . D 4 HOH A 33 533 100 HOH HOH . D 4 HOH A 34 534 220 HOH HOH . D 4 HOH A 35 535 194 HOH HOH . D 4 HOH A 36 536 17 HOH HOH . D 4 HOH A 37 537 124 HOH HOH . D 4 HOH A 38 538 29 HOH HOH . D 4 HOH A 39 539 91 HOH HOH . D 4 HOH A 40 540 61 HOH HOH . D 4 HOH A 41 541 78 HOH HOH . D 4 HOH A 42 542 218 HOH HOH . D 4 HOH A 43 543 54 HOH HOH . D 4 HOH A 44 544 88 HOH HOH . D 4 HOH A 45 545 229 HOH HOH . D 4 HOH A 46 546 44 HOH HOH . D 4 HOH A 47 547 36 HOH HOH . D 4 HOH A 48 548 200 HOH HOH . D 4 HOH A 49 549 4 HOH HOH . D 4 HOH A 50 550 24 HOH HOH . D 4 HOH A 51 551 214 HOH HOH . D 4 HOH A 52 552 53 HOH HOH . D 4 HOH A 53 553 59 HOH HOH . D 4 HOH A 54 554 23 HOH HOH . D 4 HOH A 55 555 8 HOH HOH . D 4 HOH A 56 556 42 HOH HOH . D 4 HOH A 57 557 112 HOH HOH . D 4 HOH A 58 558 40 HOH HOH . D 4 HOH A 59 559 25 HOH HOH . D 4 HOH A 60 560 57 HOH HOH . D 4 HOH A 61 561 43 HOH HOH . D 4 HOH A 62 562 211 HOH HOH . D 4 HOH A 63 563 1 HOH HOH . D 4 HOH A 64 564 121 HOH HOH . D 4 HOH A 65 565 30 HOH HOH . D 4 HOH A 66 566 11 HOH HOH . D 4 HOH A 67 567 5 HOH HOH . D 4 HOH A 68 568 97 HOH HOH . D 4 HOH A 69 569 46 HOH HOH . D 4 HOH A 70 570 113 HOH HOH . D 4 HOH A 71 571 118 HOH HOH . D 4 HOH A 72 572 12 HOH HOH . D 4 HOH A 73 573 131 HOH HOH . D 4 HOH A 74 574 13 HOH HOH . D 4 HOH A 75 575 225 HOH HOH . D 4 HOH A 76 576 6 HOH HOH . D 4 HOH A 77 577 202 HOH HOH . D 4 HOH A 78 578 26 HOH HOH . D 4 HOH A 79 579 80 HOH HOH . D 4 HOH A 80 580 71 HOH HOH . D 4 HOH A 81 581 140 HOH HOH . D 4 HOH A 82 582 3 HOH HOH . D 4 HOH A 83 583 82 HOH HOH . D 4 HOH A 84 584 103 HOH HOH . D 4 HOH A 85 585 41 HOH HOH . D 4 HOH A 86 586 128 HOH HOH . D 4 HOH A 87 587 182 HOH HOH . D 4 HOH A 88 588 166 HOH HOH . D 4 HOH A 89 589 232 HOH HOH . D 4 HOH A 90 590 52 HOH HOH . D 4 HOH A 91 591 158 HOH HOH . D 4 HOH A 92 592 212 HOH HOH . D 4 HOH A 93 593 10 HOH HOH . D 4 HOH A 94 594 93 HOH HOH . D 4 HOH A 95 595 35 HOH HOH . D 4 HOH A 96 596 16 HOH HOH . D 4 HOH A 97 597 160 HOH HOH . D 4 HOH A 98 598 213 HOH HOH . D 4 HOH A 99 599 22 HOH HOH . D 4 HOH A 100 600 9 HOH HOH . D 4 HOH A 101 601 39 HOH HOH . D 4 HOH A 102 602 99 HOH HOH . D 4 HOH A 103 603 173 HOH HOH . D 4 HOH A 104 604 136 HOH HOH . D 4 HOH A 105 605 107 HOH HOH . D 4 HOH A 106 606 152 HOH HOH . D 4 HOH A 107 607 209 HOH HOH . D 4 HOH A 108 608 94 HOH HOH . D 4 HOH A 109 609 2 HOH HOH . D 4 HOH A 110 610 18 HOH HOH . D 4 HOH A 111 611 14 HOH HOH . D 4 HOH A 112 612 141 HOH HOH . D 4 HOH A 113 613 226 HOH HOH . D 4 HOH A 114 614 70 HOH HOH . D 4 HOH A 115 615 164 HOH HOH . D 4 HOH A 116 616 172 HOH HOH . D 4 HOH A 117 617 56 HOH HOH . D 4 HOH A 118 618 7 HOH HOH . D 4 HOH A 119 619 192 HOH HOH . D 4 HOH A 120 620 207 HOH HOH . D 4 HOH A 121 621 60 HOH HOH . D 4 HOH A 122 622 101 HOH HOH . D 4 HOH A 123 623 119 HOH HOH . D 4 HOH A 124 624 83 HOH HOH . D 4 HOH A 125 625 203 HOH HOH . D 4 HOH A 126 626 189 HOH HOH . D 4 HOH A 127 627 168 HOH HOH . D 4 HOH A 128 628 231 HOH HOH . D 4 HOH A 129 629 50 HOH HOH . D 4 HOH A 130 630 199 HOH HOH . D 4 HOH A 131 631 20 HOH HOH . D 4 HOH A 132 632 49 HOH HOH . D 4 HOH A 133 633 177 HOH HOH . D 4 HOH A 134 634 208 HOH HOH . D 4 HOH A 135 635 133 HOH HOH . D 4 HOH A 136 636 109 HOH HOH . D 4 HOH A 137 637 34 HOH HOH . D 4 HOH A 138 638 74 HOH HOH . D 4 HOH A 139 639 15 HOH HOH . D 4 HOH A 140 640 98 HOH HOH . D 4 HOH A 141 641 106 HOH HOH . D 4 HOH A 142 642 92 HOH HOH . D 4 HOH A 143 643 143 HOH HOH . D 4 HOH A 144 644 37 HOH HOH . D 4 HOH A 145 645 33 HOH HOH . D 4 HOH A 146 646 162 HOH HOH . D 4 HOH A 147 647 142 HOH HOH . D 4 HOH A 148 648 95 HOH HOH . D 4 HOH A 149 649 217 HOH HOH . D 4 HOH A 150 650 66 HOH HOH . D 4 HOH A 151 651 181 HOH HOH . D 4 HOH A 152 652 105 HOH HOH . D 4 HOH A 153 653 108 HOH HOH . D 4 HOH A 154 654 51 HOH HOH . D 4 HOH A 155 655 79 HOH HOH . D 4 HOH A 156 656 62 HOH HOH . D 4 HOH A 157 657 45 HOH HOH . D 4 HOH A 158 658 206 HOH HOH . D 4 HOH A 159 659 147 HOH HOH . D 4 HOH A 160 660 77 HOH HOH . D 4 HOH A 161 661 68 HOH HOH . D 4 HOH A 162 662 67 HOH HOH . D 4 HOH A 163 663 127 HOH HOH . D 4 HOH A 164 664 165 HOH HOH . D 4 HOH A 165 665 126 HOH HOH . D 4 HOH A 166 666 234 HOH HOH . D 4 HOH A 167 667 191 HOH HOH . D 4 HOH A 168 668 69 HOH HOH . D 4 HOH A 169 669 146 HOH HOH . D 4 HOH A 170 670 196 HOH HOH . D 4 HOH A 171 671 197 HOH HOH . D 4 HOH A 172 672 104 HOH HOH . D 4 HOH A 173 673 48 HOH HOH . D 4 HOH A 174 674 81 HOH HOH . D 4 HOH A 175 675 27 HOH HOH . D 4 HOH A 176 676 55 HOH HOH . D 4 HOH A 177 677 201 HOH HOH . D 4 HOH A 178 678 159 HOH HOH . D 4 HOH A 179 679 122 HOH HOH . D 4 HOH A 180 680 175 HOH HOH . D 4 HOH A 181 681 151 HOH HOH . D 4 HOH A 182 682 145 HOH HOH . D 4 HOH A 183 683 144 HOH HOH . D 4 HOH A 184 684 193 HOH HOH . D 4 HOH A 185 685 102 HOH HOH . D 4 HOH A 186 686 120 HOH HOH . D 4 HOH A 187 687 222 HOH HOH . D 4 HOH A 188 688 186 HOH HOH . D 4 HOH A 189 689 204 HOH HOH . D 4 HOH A 190 690 179 HOH HOH . D 4 HOH A 191 691 224 HOH HOH . D 4 HOH A 192 692 205 HOH HOH . D 4 HOH A 193 693 215 HOH HOH . D 4 HOH A 194 694 148 HOH HOH . D 4 HOH A 195 695 76 HOH HOH . D 4 HOH A 196 696 153 HOH HOH . D 4 HOH A 197 697 170 HOH HOH . D 4 HOH A 198 698 227 HOH HOH . D 4 HOH A 199 699 116 HOH HOH . D 4 HOH A 200 700 28 HOH HOH . D 4 HOH A 201 701 96 HOH HOH . D 4 HOH A 202 702 190 HOH HOH . D 4 HOH A 203 703 73 HOH HOH . D 4 HOH A 204 704 110 HOH HOH . D 4 HOH A 205 705 115 HOH HOH . D 4 HOH A 206 706 216 HOH HOH . D 4 HOH A 207 707 176 HOH HOH . D 4 HOH A 208 708 167 HOH HOH . D 4 HOH A 209 709 184 HOH HOH . D 4 HOH A 210 710 87 HOH HOH . D 4 HOH A 211 711 195 HOH HOH . D 4 HOH A 212 712 64 HOH HOH . D 4 HOH A 213 713 185 HOH HOH . D 4 HOH A 214 714 174 HOH HOH . D 4 HOH A 215 715 117 HOH HOH . D 4 HOH A 216 716 130 HOH HOH . D 4 HOH A 217 717 137 HOH HOH . D 4 HOH A 218 718 180 HOH HOH . D 4 HOH A 219 719 156 HOH HOH . D 4 HOH A 220 720 135 HOH HOH . D 4 HOH A 221 721 221 HOH HOH . D 4 HOH A 222 722 163 HOH HOH . D 4 HOH A 223 723 230 HOH HOH . D 4 HOH A 224 724 89 HOH HOH . D 4 HOH A 225 725 157 HOH HOH . D 4 HOH A 226 726 65 HOH HOH . D 4 HOH A 227 727 198 HOH HOH . D 4 HOH A 228 728 150 HOH HOH . D 4 HOH A 229 729 132 HOH HOH . D 4 HOH A 230 730 178 HOH HOH . D 4 HOH A 231 731 171 HOH HOH . D 4 HOH A 232 732 154 HOH HOH . D 4 HOH A 233 733 155 HOH HOH . D 4 HOH A 234 734 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 21.186 -40.93 -22.705 1 21.42 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 20.683 -39.861 -21.751 1 52.66 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 20.582 -40.85 -24.072 1 94.38 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 20.997 -42.302 -22.136 1 82.81 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 22.667 -40.73 -22.819 1 64.77 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 21.754 -39.017 -21.391 1 72.9 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 20.81 -39.535 -24.523 1 52.5 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 21.574 -42.226 -20.909 1 35.61 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 20.274 -40.335 -20.856 1 63.2 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 19.903 -39.274 -22.241 1 63.2 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 19.513 -41.066 -24.011 1 113.25 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 21.064 -41.58 -24.726 1 113.25 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 19.942 -42.563 -22.027 1 99.37 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 21.502 -43.068 -22.729 1 99.37 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 23.098 -40.809 -21.884 1 77.73 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 23.065 -41.451 -23.443 1 77.73 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 22.859 -39.793 -23.209 1 77.73 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 21.437 -38.335 -20.784 1 87.48 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 20.437 -39.429 -25.409 1 63 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 21.925 -41.336 -20.772 1 42.73 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #