data_5QFX # _model_server_result.job_id P6_tlzJt8LBu-Z_cXg1fuQ _model_server_result.datetime_utc '2025-06-26 20:57:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QFX # _exptl.entry_id 5QFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.217 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-phenoxybenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QFX _cell.length_a 89.628 _cell.length_b 89.628 _cell.length_c 106.214 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H10 O3' _chem_comp.formula_weight 214.217 _chem_comp.id JO4 _chem_comp.mon_nstd_flag . _chem_comp.name '4-phenoxybenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 JO4 doub 173 n y C10 C09 JO4 sing 174 n y C11 C12 JO4 sing 175 n y C06 C05 JO4 doub 176 n y C06 C07 JO4 sing 177 n y C12 C13 JO4 doub 178 n y C09 O08 JO4 sing 179 n n C09 C14 JO4 doub 180 n y O08 C07 JO4 sing 181 n n C05 C04 JO4 sing 182 n y C07 C15 JO4 doub 183 n y O01 C02 JO4 doub 184 n n C14 C13 JO4 sing 185 n y C04 C02 JO4 sing 186 n n C04 C16 JO4 doub 187 n y C02 O03 JO4 sing 188 n n C15 C16 JO4 sing 189 n y C10 H101 JO4 sing 190 n n C13 H131 JO4 sing 191 n n C15 H151 JO4 sing 192 n n O03 H1 JO4 sing 193 n n C05 H051 JO4 sing 194 n n C06 H061 JO4 sing 195 n n C11 H111 JO4 sing 196 n n C12 H121 JO4 sing 197 n n C14 H141 JO4 sing 198 n n C16 H161 JO4 sing 199 n n # _atom_sites.entry_id 5QFX _atom_sites.fract_transf_matrix[1][1] 0.011157 _atom_sites.fract_transf_matrix[1][2] 0.006442 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JO4 A 1 401 1 JO4 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 129 HOH HOH . D 4 HOH A 2 502 137 HOH HOH . D 4 HOH A 3 503 175 HOH HOH . D 4 HOH A 4 504 162 HOH HOH . D 4 HOH A 5 505 92 HOH HOH . D 4 HOH A 6 506 24 HOH HOH . D 4 HOH A 7 507 84 HOH HOH . D 4 HOH A 8 508 145 HOH HOH . D 4 HOH A 9 509 102 HOH HOH . D 4 HOH A 10 510 131 HOH HOH . D 4 HOH A 11 511 123 HOH HOH . D 4 HOH A 12 512 52 HOH HOH . D 4 HOH A 13 513 168 HOH HOH . D 4 HOH A 14 514 74 HOH HOH . D 4 HOH A 15 515 173 HOH HOH . D 4 HOH A 16 516 72 HOH HOH . D 4 HOH A 17 517 50 HOH HOH . D 4 HOH A 18 518 159 HOH HOH . D 4 HOH A 19 519 98 HOH HOH . D 4 HOH A 20 520 17 HOH HOH . D 4 HOH A 21 521 20 HOH HOH . D 4 HOH A 22 522 19 HOH HOH . D 4 HOH A 23 523 6 HOH HOH . D 4 HOH A 24 524 101 HOH HOH . D 4 HOH A 25 525 63 HOH HOH . D 4 HOH A 26 526 89 HOH HOH . D 4 HOH A 27 527 51 HOH HOH . D 4 HOH A 28 528 59 HOH HOH . D 4 HOH A 29 529 108 HOH HOH . D 4 HOH A 30 530 179 HOH HOH . D 4 HOH A 31 531 94 HOH HOH . D 4 HOH A 32 532 55 HOH HOH . D 4 HOH A 33 533 80 HOH HOH . D 4 HOH A 34 534 13 HOH HOH . D 4 HOH A 35 535 117 HOH HOH . D 4 HOH A 36 536 81 HOH HOH . D 4 HOH A 37 537 69 HOH HOH . D 4 HOH A 38 538 150 HOH HOH . D 4 HOH A 39 539 29 HOH HOH . D 4 HOH A 40 540 23 HOH HOH . D 4 HOH A 41 541 1 HOH HOH . D 4 HOH A 42 542 82 HOH HOH . D 4 HOH A 43 543 22 HOH HOH . D 4 HOH A 44 544 35 HOH HOH . D 4 HOH A 45 545 40 HOH HOH . D 4 HOH A 46 546 115 HOH HOH . D 4 HOH A 47 547 99 HOH HOH . D 4 HOH A 48 548 36 HOH HOH . D 4 HOH A 49 549 118 HOH HOH . D 4 HOH A 50 550 83 HOH HOH . D 4 HOH A 51 551 95 HOH HOH . D 4 HOH A 52 552 25 HOH HOH . D 4 HOH A 53 553 133 HOH HOH . D 4 HOH A 54 554 38 HOH HOH . D 4 HOH A 55 555 11 HOH HOH . D 4 HOH A 56 556 8 HOH HOH . D 4 HOH A 57 557 4 HOH HOH . D 4 HOH A 58 558 10 HOH HOH . D 4 HOH A 59 559 39 HOH HOH . D 4 HOH A 60 560 66 HOH HOH . D 4 HOH A 61 561 3 HOH HOH . D 4 HOH A 62 562 41 HOH HOH . D 4 HOH A 63 563 111 HOH HOH . D 4 HOH A 64 564 93 HOH HOH . D 4 HOH A 65 565 113 HOH HOH . D 4 HOH A 66 566 42 HOH HOH . D 4 HOH A 67 567 5 HOH HOH . D 4 HOH A 68 568 110 HOH HOH . D 4 HOH A 69 569 68 HOH HOH . D 4 HOH A 70 570 12 HOH HOH . D 4 HOH A 71 571 70 HOH HOH . D 4 HOH A 72 572 32 HOH HOH . D 4 HOH A 73 573 48 HOH HOH . D 4 HOH A 74 574 103 HOH HOH . D 4 HOH A 75 575 62 HOH HOH . D 4 HOH A 76 576 143 HOH HOH . D 4 HOH A 77 577 105 HOH HOH . D 4 HOH A 78 578 30 HOH HOH . D 4 HOH A 79 579 142 HOH HOH . D 4 HOH A 80 580 14 HOH HOH . D 4 HOH A 81 581 78 HOH HOH . D 4 HOH A 82 582 77 HOH HOH . D 4 HOH A 83 583 26 HOH HOH . D 4 HOH A 84 584 60 HOH HOH . D 4 HOH A 85 585 54 HOH HOH . D 4 HOH A 86 586 2 HOH HOH . D 4 HOH A 87 587 7 HOH HOH . D 4 HOH A 88 588 144 HOH HOH . D 4 HOH A 89 589 76 HOH HOH . D 4 HOH A 90 590 49 HOH HOH . D 4 HOH A 91 591 53 HOH HOH . D 4 HOH A 92 592 152 HOH HOH . D 4 HOH A 93 593 16 HOH HOH . D 4 HOH A 94 594 112 HOH HOH . D 4 HOH A 95 595 9 HOH HOH . D 4 HOH A 96 596 43 HOH HOH . D 4 HOH A 97 597 21 HOH HOH . D 4 HOH A 98 598 18 HOH HOH . D 4 HOH A 99 599 163 HOH HOH . D 4 HOH A 100 600 119 HOH HOH . D 4 HOH A 101 601 37 HOH HOH . D 4 HOH A 102 602 87 HOH HOH . D 4 HOH A 103 603 147 HOH HOH . D 4 HOH A 104 604 155 HOH HOH . D 4 HOH A 105 605 124 HOH HOH . D 4 HOH A 106 606 157 HOH HOH . D 4 HOH A 107 607 104 HOH HOH . D 4 HOH A 108 608 31 HOH HOH . D 4 HOH A 109 609 172 HOH HOH . D 4 HOH A 110 610 174 HOH HOH . D 4 HOH A 111 611 34 HOH HOH . D 4 HOH A 112 612 61 HOH HOH . D 4 HOH A 113 613 58 HOH HOH . D 4 HOH A 114 614 160 HOH HOH . D 4 HOH A 115 615 79 HOH HOH . D 4 HOH A 116 616 167 HOH HOH . D 4 HOH A 117 617 91 HOH HOH . D 4 HOH A 118 618 176 HOH HOH . D 4 HOH A 119 619 114 HOH HOH . D 4 HOH A 120 620 15 HOH HOH . D 4 HOH A 121 621 47 HOH HOH . D 4 HOH A 122 622 46 HOH HOH . D 4 HOH A 123 623 86 HOH HOH . D 4 HOH A 124 624 139 HOH HOH . D 4 HOH A 125 625 45 HOH HOH . D 4 HOH A 126 626 146 HOH HOH . D 4 HOH A 127 627 180 HOH HOH . D 4 HOH A 128 628 161 HOH HOH . D 4 HOH A 129 629 158 HOH HOH . D 4 HOH A 130 630 33 HOH HOH . D 4 HOH A 131 631 71 HOH HOH . D 4 HOH A 132 632 128 HOH HOH . D 4 HOH A 133 633 156 HOH HOH . D 4 HOH A 134 634 164 HOH HOH . D 4 HOH A 135 635 181 HOH HOH . D 4 HOH A 136 636 121 HOH HOH . D 4 HOH A 137 637 67 HOH HOH . D 4 HOH A 138 638 27 HOH HOH . D 4 HOH A 139 639 132 HOH HOH . D 4 HOH A 140 640 151 HOH HOH . D 4 HOH A 141 641 44 HOH HOH . D 4 HOH A 142 642 138 HOH HOH . D 4 HOH A 143 643 141 HOH HOH . D 4 HOH A 144 644 88 HOH HOH . D 4 HOH A 145 645 65 HOH HOH . D 4 HOH A 146 646 90 HOH HOH . D 4 HOH A 147 647 134 HOH HOH . D 4 HOH A 148 648 122 HOH HOH . D 4 HOH A 149 649 154 HOH HOH . D 4 HOH A 150 650 85 HOH HOH . D 4 HOH A 151 651 170 HOH HOH . D 4 HOH A 152 652 100 HOH HOH . D 4 HOH A 153 653 126 HOH HOH . D 4 HOH A 154 654 165 HOH HOH . D 4 HOH A 155 655 178 HOH HOH . D 4 HOH A 156 656 116 HOH HOH . D 4 HOH A 157 657 135 HOH HOH . D 4 HOH A 158 658 136 HOH HOH . D 4 HOH A 159 659 177 HOH HOH . D 4 HOH A 160 660 96 HOH HOH . D 4 HOH A 161 661 28 HOH HOH . D 4 HOH A 162 662 64 HOH HOH . D 4 HOH A 163 663 120 HOH HOH . D 4 HOH A 164 664 182 HOH HOH . D 4 HOH A 165 665 140 HOH HOH . D 4 HOH A 166 666 171 HOH HOH . D 4 HOH A 167 667 127 HOH HOH . D 4 HOH A 168 668 97 HOH HOH . D 4 HOH A 169 669 107 HOH HOH . D 4 HOH A 170 670 166 HOH HOH . D 4 HOH A 171 671 73 HOH HOH . D 4 HOH A 172 672 149 HOH HOH . D 4 HOH A 173 673 130 HOH HOH . D 4 HOH A 174 674 56 HOH HOH . D 4 HOH A 175 675 148 HOH HOH . D 4 HOH A 176 676 109 HOH HOH . D 4 HOH A 177 677 75 HOH HOH . D 4 HOH A 178 678 57 HOH HOH . D 4 HOH A 179 679 125 HOH HOH . D 4 HOH A 180 680 169 HOH HOH . D 4 HOH A 181 681 153 HOH HOH . D 4 HOH A 182 682 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JO4 . C . B 2 -39.371 32.871 9.417 0.28 81.56 ? C10 JO4 401 A 1 HETATM 2 C C10 JO4 . D . B 2 -39.373 32.872 9.418 0.28 81.56 ? C10 JO4 401 A 1 HETATM 3 C C13 JO4 . C . B 2 -41.376 33.578 11.215 0.28 53.58 ? C13 JO4 401 A 1 HETATM 4 C C13 JO4 . D . B 2 -41.378 33.579 11.215 0.28 53.58 ? C13 JO4 401 A 1 HETATM 5 C C15 JO4 . C . B 2 -37.691 29.517 12.152 0.28 59.12 ? C15 JO4 401 A 1 HETATM 6 C C15 JO4 . D . B 2 -37.694 29.518 12.151 0.28 59.12 ? C15 JO4 401 A 1 HETATM 7 O O01 JO4 . C . B 2 -33.307 28.435 10.905 0.28 47.44 -1 O01 JO4 401 A 1 HETATM 8 O O01 JO4 . D . B 2 -33.263 28.889 13.027 0.28 60.71 -1 O01 JO4 401 A 1 HETATM 9 C C02 JO4 . C . B 2 -33.842 28.778 11.909 0.28 66.69 ? C02 JO4 401 A 1 HETATM 10 C C02 JO4 . D . B 2 -33.847 28.779 11.903 0.28 66.67 ? C02 JO4 401 A 1 HETATM 11 O O03 JO4 . C . B 2 -33.259 28.886 13.033 0.28 60.65 ? O03 JO4 401 A 1 HETATM 12 O O03 JO4 . D . B 2 -33.304 28.433 10.906 0.28 47.47 ? O03 JO4 401 A 1 HETATM 13 C C04 JO4 . C . B 2 -35.394 29.215 11.643 0.28 72.82 ? C04 JO4 401 A 1 HETATM 14 C C04 JO4 . D . B 2 -35.398 29.216 11.64 0.28 72.82 ? C04 JO4 401 A 1 HETATM 15 C C05 JO4 . C . B 2 -35.712 29.663 10.388 0.28 64.17 ? C05 JO4 401 A 1 HETATM 16 C C05 JO4 . D . B 2 -35.716 29.664 10.385 0.28 64.18 ? C05 JO4 401 A 1 HETATM 17 C C06 JO4 . C . B 2 -36.843 30.069 10.052 0.28 78.88 ? C06 JO4 401 A 1 HETATM 18 C C06 JO4 . D . B 2 -36.848 30.071 10.05 0.28 78.88 ? C06 JO4 401 A 1 HETATM 19 C C07 JO4 . C . B 2 -37.917 30.08 10.887 0.28 56.02 ? C07 JO4 401 A 1 HETATM 20 C C07 JO4 . D . B 2 -37.92 30.082 10.886 0.28 56.01 ? C07 JO4 401 A 1 HETATM 21 O O08 JO4 . C . B 2 -39.264 30.587 10.372 0.28 47.98 ? O08 JO4 401 A 1 HETATM 22 O O08 JO4 . D . B 2 -39.268 30.588 10.373 0.28 48 ? O08 JO4 401 A 1 HETATM 23 C C09 JO4 . C . B 2 -39.78 31.877 10.35 0.28 69.63 ? C09 JO4 401 A 1 HETATM 24 C C09 JO4 . D . B 2 -39.783 31.879 10.351 0.28 69.63 ? C09 JO4 401 A 1 HETATM 25 C C11 JO4 . C . B 2 -39.934 34.165 9.424 0.28 56.79 ? C11 JO4 401 A 1 HETATM 26 C C11 JO4 . D . B 2 -39.935 34.166 9.425 0.28 56.79 ? C11 JO4 401 A 1 HETATM 27 C C12 JO4 . C . B 2 -40.919 34.508 10.316 0.28 52.31 ? C12 JO4 401 A 1 HETATM 28 C C12 JO4 . D . B 2 -40.921 34.509 10.317 0.28 52.31 ? C12 JO4 401 A 1 HETATM 29 C C14 JO4 . C . B 2 -40.847 32.302 11.215 0.28 50.26 ? C14 JO4 401 A 1 HETATM 30 C C14 JO4 . D . B 2 -40.849 32.303 11.215 0.28 50.26 ? C14 JO4 401 A 1 HETATM 31 C C16 JO4 . C . B 2 -36.473 29.104 12.507 0.28 73.92 ? C16 JO4 401 A 1 HETATM 32 C C16 JO4 . D . B 2 -36.475 29.104 12.504 0.28 73.91 ? C16 JO4 401 A 1 HETATM 33 H H101 JO4 . C . B 2 -38.577 32.61 8.723 0.28 97.87 ? H101 JO4 401 A 1 HETATM 34 H H101 JO4 . D . B 2 -38.579 32.611 8.724 0.28 97.87 ? H101 JO4 401 A 1 HETATM 35 H H131 JO4 . C . B 2 -42.181 33.878 11.915 0.28 64.3 ? H131 JO4 401 A 1 HETATM 36 H H131 JO4 . D . B 2 -42.183 33.878 11.915 0.28 64.3 ? H131 JO4 401 A 1 HETATM 37 H H151 JO4 . C . B 2 -38.523 29.49 12.86 0.28 70.94 ? H151 JO4 401 A 1 HETATM 38 H H151 JO4 . D . B 2 -38.525 29.491 12.86 0.28 70.95 ? H151 JO4 401 A 1 HETATM 39 H H051 JO4 . C . B 2 -34.887 29.782 9.647 0.28 77.01 ? H051 JO4 401 A 1 HETATM 40 H H051 JO4 . D . B 2 -34.893 29.785 9.642 0.28 77.01 ? H051 JO4 401 A 1 HETATM 41 H H061 JO4 . C . B 2 -36.936 30.482 9.028 0.28 94.66 ? H061 JO4 401 A 1 HETATM 42 H H061 JO4 . D . B 2 -36.942 30.484 9.026 0.28 94.66 ? H061 JO4 401 A 1 HETATM 43 H H111 JO4 . C . B 2 -39.576 34.924 8.706 0.28 68.14 ? H111 JO4 401 A 1 HETATM 44 H H111 JO4 . D . B 2 -39.578 34.925 8.707 0.28 68.15 ? H111 JO4 401 A 1 HETATM 45 H H121 JO4 . C . B 2 -41.361 35.529 10.298 0.28 62.77 ? H121 JO4 401 A 1 HETATM 46 H H121 JO4 . D . B 2 -41.362 35.53 10.299 0.28 62.77 ? H121 JO4 401 A 1 HETATM 47 H H141 JO4 . C . B 2 -41.221 31.597 11.957 0.28 60.31 ? H141 JO4 401 A 1 HETATM 48 H H141 JO4 . D . B 2 -41.224 31.598 11.957 0.28 60.32 ? H141 JO4 401 A 1 HETATM 49 H H161 JO4 . C . B 2 -36.284 28.731 13.52 0.28 88.7 ? H161 JO4 401 A 1 HETATM 50 H H161 JO4 . D . B 2 -36.285 28.731 13.517 0.28 88.7 ? H161 JO4 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 50 #