data_5QFY # _model_server_result.job_id xvX2pvcCaa10fIYdi_c-Sw _model_server_result.datetime_utc '2024-11-13 08:05:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QFY # _exptl.entry_id 5QFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QFY _cell.length_a 89.785 _cell.length_b 89.785 _cell.length_c 106.516 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O GLU 6 A GLU 6 1_555 A CD1 ILE 10 A ILE 10 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.228 ? covale ? covale2 A O GLU 6 A GLU 6 1_555 A CD1 ILE 10 A ILE 10 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.228 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 361 n n C C2 TRS sing 362 n n C C3 TRS sing 363 n n C N TRS sing 364 n n C1 O1 TRS sing 365 n n C1 H11 TRS sing 366 n n C1 H12 TRS sing 367 n n C2 O2 TRS sing 368 n n C2 H21 TRS sing 369 n n C2 H22 TRS sing 370 n n C3 O3 TRS sing 371 n n C3 H31 TRS sing 372 n n C3 H32 TRS sing 373 n n N HN1 TRS sing 374 n n N HN2 TRS sing 375 n n N HN3 TRS sing 376 n n O1 HO1 TRS sing 377 n n O2 HO2 TRS sing 378 n n O3 HO3 TRS sing 379 n n # _atom_sites.entry_id 5QFY _atom_sites.fract_transf_matrix[1][1] 0.011138 _atom_sites.fract_transf_matrix[1][2] 0.00643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JO1 A 1 401 2 JO1 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 143 HOH HOH . D 4 HOH A 2 502 238 HOH HOH . D 4 HOH A 3 503 198 HOH HOH . D 4 HOH A 4 504 68 HOH HOH . D 4 HOH A 5 505 39 HOH HOH . D 4 HOH A 6 506 174 HOH HOH . D 4 HOH A 7 507 160 HOH HOH . D 4 HOH A 8 508 189 HOH HOH . D 4 HOH A 9 509 234 HOH HOH . D 4 HOH A 10 510 153 HOH HOH . D 4 HOH A 11 511 244 HOH HOH . D 4 HOH A 12 512 216 HOH HOH . D 4 HOH A 13 513 246 HOH HOH . D 4 HOH A 14 514 58 HOH HOH . D 4 HOH A 15 515 21 HOH HOH . D 4 HOH A 16 516 138 HOH HOH . D 4 HOH A 17 517 193 HOH HOH . D 4 HOH A 18 518 19 HOH HOH . D 4 HOH A 19 519 90 HOH HOH . D 4 HOH A 20 520 56 HOH HOH . D 4 HOH A 21 521 177 HOH HOH . D 4 HOH A 22 522 142 HOH HOH . D 4 HOH A 23 523 85 HOH HOH . D 4 HOH A 24 524 23 HOH HOH . D 4 HOH A 25 525 187 HOH HOH . D 4 HOH A 26 526 130 HOH HOH . D 4 HOH A 27 527 44 HOH HOH . D 4 HOH A 28 528 109 HOH HOH . D 4 HOH A 29 529 57 HOH HOH . D 4 HOH A 30 530 158 HOH HOH . D 4 HOH A 31 531 91 HOH HOH . D 4 HOH A 32 532 209 HOH HOH . D 4 HOH A 33 533 117 HOH HOH . D 4 HOH A 34 534 132 HOH HOH . D 4 HOH A 35 535 17 HOH HOH . D 4 HOH A 36 536 188 HOH HOH . D 4 HOH A 37 537 71 HOH HOH . D 4 HOH A 38 538 25 HOH HOH . D 4 HOH A 39 539 115 HOH HOH . D 4 HOH A 40 540 62 HOH HOH . D 4 HOH A 41 541 4 HOH HOH . D 4 HOH A 42 542 206 HOH HOH . D 4 HOH A 43 543 75 HOH HOH . D 4 HOH A 44 544 6 HOH HOH . D 4 HOH A 45 545 156 HOH HOH . D 4 HOH A 46 546 105 HOH HOH . D 4 HOH A 47 547 215 HOH HOH . D 4 HOH A 48 548 45 HOH HOH . D 4 HOH A 49 549 43 HOH HOH . D 4 HOH A 50 550 30 HOH HOH . D 4 HOH A 51 551 78 HOH HOH . D 4 HOH A 52 552 99 HOH HOH . D 4 HOH A 53 553 37 HOH HOH . D 4 HOH A 54 554 94 HOH HOH . D 4 HOH A 55 555 14 HOH HOH . D 4 HOH A 56 556 13 HOH HOH . D 4 HOH A 57 557 166 HOH HOH . D 4 HOH A 58 558 242 HOH HOH . D 4 HOH A 59 559 1 HOH HOH . D 4 HOH A 60 560 5 HOH HOH . D 4 HOH A 61 561 8 HOH HOH . D 4 HOH A 62 562 26 HOH HOH . D 4 HOH A 63 563 191 HOH HOH . D 4 HOH A 64 564 11 HOH HOH . D 4 HOH A 65 565 235 HOH HOH . D 4 HOH A 66 566 7 HOH HOH . D 4 HOH A 67 567 134 HOH HOH . D 4 HOH A 68 568 141 HOH HOH . D 4 HOH A 69 569 24 HOH HOH . D 4 HOH A 70 570 123 HOH HOH . D 4 HOH A 71 571 107 HOH HOH . D 4 HOH A 72 572 3 HOH HOH . D 4 HOH A 73 573 217 HOH HOH . D 4 HOH A 74 574 124 HOH HOH . D 4 HOH A 75 575 81 HOH HOH . D 4 HOH A 76 576 76 HOH HOH . D 4 HOH A 77 577 231 HOH HOH . D 4 HOH A 78 578 180 HOH HOH . D 4 HOH A 79 579 53 HOH HOH . D 4 HOH A 80 580 41 HOH HOH . D 4 HOH A 81 581 31 HOH HOH . D 4 HOH A 82 582 197 HOH HOH . D 4 HOH A 83 583 74 HOH HOH . D 4 HOH A 84 584 42 HOH HOH . D 4 HOH A 85 585 226 HOH HOH . D 4 HOH A 86 586 125 HOH HOH . D 4 HOH A 87 587 213 HOH HOH . D 4 HOH A 88 588 145 HOH HOH . D 4 HOH A 89 589 36 HOH HOH . D 4 HOH A 90 590 100 HOH HOH . D 4 HOH A 91 591 52 HOH HOH . D 4 HOH A 92 592 10 HOH HOH . D 4 HOH A 93 593 119 HOH HOH . D 4 HOH A 94 594 33 HOH HOH . D 4 HOH A 95 595 82 HOH HOH . D 4 HOH A 96 596 83 HOH HOH . D 4 HOH A 97 597 27 HOH HOH . D 4 HOH A 98 598 12 HOH HOH . D 4 HOH A 99 599 9 HOH HOH . D 4 HOH A 100 600 59 HOH HOH . D 4 HOH A 101 601 34 HOH HOH . D 4 HOH A 102 602 40 HOH HOH . D 4 HOH A 103 603 51 HOH HOH . D 4 HOH A 104 604 15 HOH HOH . D 4 HOH A 105 605 227 HOH HOH . D 4 HOH A 106 606 60 HOH HOH . D 4 HOH A 107 607 173 HOH HOH . D 4 HOH A 108 608 103 HOH HOH . D 4 HOH A 109 609 165 HOH HOH . D 4 HOH A 110 610 222 HOH HOH . D 4 HOH A 111 611 108 HOH HOH . D 4 HOH A 112 612 77 HOH HOH . D 4 HOH A 113 613 240 HOH HOH . D 4 HOH A 114 614 18 HOH HOH . D 4 HOH A 115 615 96 HOH HOH . D 4 HOH A 116 616 65 HOH HOH . D 4 HOH A 117 617 147 HOH HOH . D 4 HOH A 118 618 111 HOH HOH . D 4 HOH A 119 619 97 HOH HOH . D 4 HOH A 120 620 104 HOH HOH . D 4 HOH A 121 621 32 HOH HOH . D 4 HOH A 122 622 92 HOH HOH . D 4 HOH A 123 623 80 HOH HOH . D 4 HOH A 124 624 239 HOH HOH . D 4 HOH A 125 625 2 HOH HOH . D 4 HOH A 126 626 196 HOH HOH . D 4 HOH A 127 627 98 HOH HOH . D 4 HOH A 128 628 219 HOH HOH . D 4 HOH A 129 629 55 HOH HOH . D 4 HOH A 130 630 114 HOH HOH . D 4 HOH A 131 631 121 HOH HOH . D 4 HOH A 132 632 67 HOH HOH . D 4 HOH A 133 633 247 HOH HOH . D 4 HOH A 134 634 202 HOH HOH . D 4 HOH A 135 635 16 HOH HOH . D 4 HOH A 136 636 22 HOH HOH . D 4 HOH A 137 637 88 HOH HOH . D 4 HOH A 138 638 200 HOH HOH . D 4 HOH A 139 639 163 HOH HOH . D 4 HOH A 140 640 139 HOH HOH . D 4 HOH A 141 641 205 HOH HOH . D 4 HOH A 142 642 137 HOH HOH . D 4 HOH A 143 643 204 HOH HOH . D 4 HOH A 144 644 146 HOH HOH . D 4 HOH A 145 645 87 HOH HOH . D 4 HOH A 146 646 120 HOH HOH . D 4 HOH A 147 647 192 HOH HOH . D 4 HOH A 148 648 20 HOH HOH . D 4 HOH A 149 649 70 HOH HOH . D 4 HOH A 150 650 89 HOH HOH . D 4 HOH A 151 651 129 HOH HOH . D 4 HOH A 152 652 112 HOH HOH . D 4 HOH A 153 653 127 HOH HOH . D 4 HOH A 154 654 93 HOH HOH . D 4 HOH A 155 655 106 HOH HOH . D 4 HOH A 156 656 35 HOH HOH . D 4 HOH A 157 657 49 HOH HOH . D 4 HOH A 158 658 144 HOH HOH . D 4 HOH A 159 659 133 HOH HOH . D 4 HOH A 160 660 201 HOH HOH . D 4 HOH A 161 661 101 HOH HOH . D 4 HOH A 162 662 140 HOH HOH . D 4 HOH A 163 663 218 HOH HOH . D 4 HOH A 164 664 236 HOH HOH . D 4 HOH A 165 665 64 HOH HOH . D 4 HOH A 166 666 50 HOH HOH . D 4 HOH A 167 667 113 HOH HOH . D 4 HOH A 168 668 185 HOH HOH . D 4 HOH A 169 669 207 HOH HOH . D 4 HOH A 170 670 38 HOH HOH . D 4 HOH A 171 671 46 HOH HOH . D 4 HOH A 172 672 48 HOH HOH . D 4 HOH A 173 673 110 HOH HOH . D 4 HOH A 174 674 126 HOH HOH . D 4 HOH A 175 675 148 HOH HOH . D 4 HOH A 176 676 194 HOH HOH . D 4 HOH A 177 677 79 HOH HOH . D 4 HOH A 178 678 47 HOH HOH . D 4 HOH A 179 679 232 HOH HOH . D 4 HOH A 180 680 66 HOH HOH . D 4 HOH A 181 681 61 HOH HOH . D 4 HOH A 182 682 211 HOH HOH . D 4 HOH A 183 683 28 HOH HOH . D 4 HOH A 184 684 150 HOH HOH . D 4 HOH A 185 685 149 HOH HOH . D 4 HOH A 186 686 73 HOH HOH . D 4 HOH A 187 687 122 HOH HOH . D 4 HOH A 188 688 128 HOH HOH . D 4 HOH A 189 689 184 HOH HOH . D 4 HOH A 190 690 175 HOH HOH . D 4 HOH A 191 691 195 HOH HOH . D 4 HOH A 192 692 54 HOH HOH . D 4 HOH A 193 693 154 HOH HOH . D 4 HOH A 194 694 159 HOH HOH . D 4 HOH A 195 695 152 HOH HOH . D 4 HOH A 196 696 230 HOH HOH . D 4 HOH A 197 697 72 HOH HOH . D 4 HOH A 198 698 229 HOH HOH . D 4 HOH A 199 699 203 HOH HOH . D 4 HOH A 200 700 95 HOH HOH . D 4 HOH A 201 701 223 HOH HOH . D 4 HOH A 202 702 29 HOH HOH . D 4 HOH A 203 703 116 HOH HOH . D 4 HOH A 204 704 212 HOH HOH . D 4 HOH A 205 705 69 HOH HOH . D 4 HOH A 206 706 214 HOH HOH . D 4 HOH A 207 707 186 HOH HOH . D 4 HOH A 208 708 228 HOH HOH . D 4 HOH A 209 709 248 HOH HOH . D 4 HOH A 210 710 171 HOH HOH . D 4 HOH A 211 711 190 HOH HOH . D 4 HOH A 212 712 135 HOH HOH . D 4 HOH A 213 713 237 HOH HOH . D 4 HOH A 214 714 225 HOH HOH . D 4 HOH A 215 715 167 HOH HOH . D 4 HOH A 216 716 102 HOH HOH . D 4 HOH A 217 717 221 HOH HOH . D 4 HOH A 218 718 182 HOH HOH . D 4 HOH A 219 719 178 HOH HOH . D 4 HOH A 220 720 183 HOH HOH . D 4 HOH A 221 721 176 HOH HOH . D 4 HOH A 222 722 181 HOH HOH . D 4 HOH A 223 723 84 HOH HOH . D 4 HOH A 224 724 63 HOH HOH . D 4 HOH A 225 725 224 HOH HOH . D 4 HOH A 226 726 157 HOH HOH . D 4 HOH A 227 727 131 HOH HOH . D 4 HOH A 228 728 168 HOH HOH . D 4 HOH A 229 729 169 HOH HOH . D 4 HOH A 230 730 241 HOH HOH . D 4 HOH A 231 731 155 HOH HOH . D 4 HOH A 232 732 172 HOH HOH . D 4 HOH A 233 733 220 HOH HOH . D 4 HOH A 234 734 136 HOH HOH . D 4 HOH A 235 735 208 HOH HOH . D 4 HOH A 236 736 86 HOH HOH . D 4 HOH A 237 737 151 HOH HOH . D 4 HOH A 238 738 162 HOH HOH . D 4 HOH A 239 739 118 HOH HOH . D 4 HOH A 240 740 233 HOH HOH . D 4 HOH A 241 741 164 HOH HOH . D 4 HOH A 242 742 161 HOH HOH . D 4 HOH A 243 743 199 HOH HOH . D 4 HOH A 244 744 210 HOH HOH . D 4 HOH A 245 745 170 HOH HOH . D 4 HOH A 246 746 245 HOH HOH . D 4 HOH A 247 747 179 HOH HOH . D 4 HOH A 248 748 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 21.357 -40.959 -22.654 1 20.81 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 20.828 -39.89 -21.699 1 45.23 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 20.736 -40.893 -24.006 1 93.68 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 21.148 -42.32 -22.063 1 80.91 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 22.831 -40.768 -22.777 1 70.54 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 21.885 -39.022 -21.362 1 132.8 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 20.958 -39.571 -24.465 1 64.43 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 21.722 -42.219 -20.837 1 33.24 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 20.464 -40.303 -20.9 1 54.28 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 20.106 -39.394 -22.116 1 54.28 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 19.788 -41.093 -23.964 1 112.42 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 21.136 -41.542 -24.606 1 112.42 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 21.567 -43.011 -22.599 1 97.09 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 20.206 -42.542 -22 1 97.09 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 23.236 -41.469 -22.487 1 84.65 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 23.072 -40.086 -22.312 1 84.65 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 23.036 -40.639 -23.602 1 84.65 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 21.659 -38.546 -20.708 1 159.37 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 20.625 -39.481 -25.231 1 77.32 ? HO2 TRS 402 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #