data_5QFZ # _model_server_result.job_id e2BqOgri6HXryhkbm4u31A _model_server_result.datetime_utc '2024-10-18 04:22:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5QFZ # _exptl.entry_id 5QFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QFZ _cell.length_a 89.825 _cell.length_b 89.825 _cell.length_c 106.589 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CA GLN 9 A GLN 9 1_555 A CE LYS 12 A LYS 12 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.298 ? covale ? covale2 A CA GLN 9 A GLN 9 1_555 A CE LYS 12 A LYS 12 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.298 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # _atom_sites.entry_id 5QFZ _atom_sites.fract_transf_matrix[1][1] 0.011133 _atom_sites.fract_transf_matrix[1][2] 0.006428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GW1 A 1 401 1 GW1 LIG . C 2 GW1 A 1 402 3 GW1 LIG . D 3 TRS A 1 403 500 TRS TRS . E 4 HOH A 1 501 150 HOH HOH . E 4 HOH A 2 502 205 HOH HOH . E 4 HOH A 3 503 214 HOH HOH . E 4 HOH A 4 504 234 HOH HOH . E 4 HOH A 5 505 126 HOH HOH . E 4 HOH A 6 506 160 HOH HOH . E 4 HOH A 7 507 155 HOH HOH . E 4 HOH A 8 508 123 HOH HOH . E 4 HOH A 9 509 185 HOH HOH . E 4 HOH A 10 510 153 HOH HOH . E 4 HOH A 11 511 168 HOH HOH . E 4 HOH A 12 512 125 HOH HOH . E 4 HOH A 13 513 144 HOH HOH . E 4 HOH A 14 514 162 HOH HOH . E 4 HOH A 15 515 248 HOH HOH . E 4 HOH A 16 516 21 HOH HOH . E 4 HOH A 17 517 60 HOH HOH . E 4 HOH A 18 518 115 HOH HOH . E 4 HOH A 19 519 39 HOH HOH . E 4 HOH A 20 520 235 HOH HOH . E 4 HOH A 21 521 89 HOH HOH . E 4 HOH A 22 522 122 HOH HOH . E 4 HOH A 23 523 25 HOH HOH . E 4 HOH A 24 524 228 HOH HOH . E 4 HOH A 25 525 184 HOH HOH . E 4 HOH A 26 526 152 HOH HOH . E 4 HOH A 27 527 143 HOH HOH . E 4 HOH A 28 528 71 HOH HOH . E 4 HOH A 29 529 136 HOH HOH . E 4 HOH A 30 530 27 HOH HOH . E 4 HOH A 31 531 19 HOH HOH . E 4 HOH A 32 532 4 HOH HOH . E 4 HOH A 33 533 212 HOH HOH . E 4 HOH A 34 534 129 HOH HOH . E 4 HOH A 35 535 183 HOH HOH . E 4 HOH A 36 536 17 HOH HOH . E 4 HOH A 37 537 99 HOH HOH . E 4 HOH A 38 538 179 HOH HOH . E 4 HOH A 39 539 3 HOH HOH . E 4 HOH A 40 540 82 HOH HOH . E 4 HOH A 41 541 30 HOH HOH . E 4 HOH A 42 542 78 HOH HOH . E 4 HOH A 43 543 84 HOH HOH . E 4 HOH A 44 544 43 HOH HOH . E 4 HOH A 45 545 61 HOH HOH . E 4 HOH A 46 546 110 HOH HOH . E 4 HOH A 47 547 165 HOH HOH . E 4 HOH A 48 548 186 HOH HOH . E 4 HOH A 49 549 37 HOH HOH . E 4 HOH A 50 550 6 HOH HOH . E 4 HOH A 51 551 10 HOH HOH . E 4 HOH A 52 552 93 HOH HOH . E 4 HOH A 53 553 59 HOH HOH . E 4 HOH A 54 554 242 HOH HOH . E 4 HOH A 55 555 31 HOH HOH . E 4 HOH A 56 556 174 HOH HOH . E 4 HOH A 57 557 26 HOH HOH . E 4 HOH A 58 558 24 HOH HOH . E 4 HOH A 59 559 56 HOH HOH . E 4 HOH A 60 560 215 HOH HOH . E 4 HOH A 61 561 204 HOH HOH . E 4 HOH A 62 562 94 HOH HOH . E 4 HOH A 63 563 130 HOH HOH . E 4 HOH A 64 564 226 HOH HOH . E 4 HOH A 65 565 233 HOH HOH . E 4 HOH A 66 566 145 HOH HOH . E 4 HOH A 67 567 109 HOH HOH . E 4 HOH A 68 568 11 HOH HOH . E 4 HOH A 69 569 191 HOH HOH . E 4 HOH A 70 570 13 HOH HOH . E 4 HOH A 71 571 5 HOH HOH . E 4 HOH A 72 572 108 HOH HOH . E 4 HOH A 73 573 86 HOH HOH . E 4 HOH A 74 574 74 HOH HOH . E 4 HOH A 75 575 124 HOH HOH . E 4 HOH A 76 576 100 HOH HOH . E 4 HOH A 77 577 1 HOH HOH . E 4 HOH A 78 578 12 HOH HOH . E 4 HOH A 79 579 220 HOH HOH . E 4 HOH A 80 580 79 HOH HOH . E 4 HOH A 81 581 244 HOH HOH . E 4 HOH A 82 582 63 HOH HOH . E 4 HOH A 83 583 70 HOH HOH . E 4 HOH A 84 584 58 HOH HOH . E 4 HOH A 85 585 87 HOH HOH . E 4 HOH A 86 586 8 HOH HOH . E 4 HOH A 87 587 44 HOH HOH . E 4 HOH A 88 588 36 HOH HOH . E 4 HOH A 89 589 140 HOH HOH . E 4 HOH A 90 590 16 HOH HOH . E 4 HOH A 91 591 96 HOH HOH . E 4 HOH A 92 592 42 HOH HOH . E 4 HOH A 93 593 45 HOH HOH . E 4 HOH A 94 594 34 HOH HOH . E 4 HOH A 95 595 22 HOH HOH . E 4 HOH A 96 596 92 HOH HOH . E 4 HOH A 97 597 221 HOH HOH . E 4 HOH A 98 598 104 HOH HOH . E 4 HOH A 99 599 41 HOH HOH . E 4 HOH A 100 600 81 HOH HOH . E 4 HOH A 101 601 14 HOH HOH . E 4 HOH A 102 602 23 HOH HOH . E 4 HOH A 103 603 201 HOH HOH . E 4 HOH A 104 604 80 HOH HOH . E 4 HOH A 105 605 77 HOH HOH . E 4 HOH A 106 606 206 HOH HOH . E 4 HOH A 107 607 91 HOH HOH . E 4 HOH A 108 608 188 HOH HOH . E 4 HOH A 109 609 159 HOH HOH . E 4 HOH A 110 610 35 HOH HOH . E 4 HOH A 111 611 107 HOH HOH . E 4 HOH A 112 612 54 HOH HOH . E 4 HOH A 113 613 132 HOH HOH . E 4 HOH A 114 614 9 HOH HOH . E 4 HOH A 115 615 236 HOH HOH . E 4 HOH A 116 616 50 HOH HOH . E 4 HOH A 117 617 114 HOH HOH . E 4 HOH A 118 618 97 HOH HOH . E 4 HOH A 119 619 2 HOH HOH . E 4 HOH A 120 620 157 HOH HOH . E 4 HOH A 121 621 120 HOH HOH . E 4 HOH A 122 622 167 HOH HOH . E 4 HOH A 123 623 7 HOH HOH . E 4 HOH A 124 624 142 HOH HOH . E 4 HOH A 125 625 133 HOH HOH . E 4 HOH A 126 626 40 HOH HOH . E 4 HOH A 127 627 106 HOH HOH . E 4 HOH A 128 628 32 HOH HOH . E 4 HOH A 129 629 33 HOH HOH . E 4 HOH A 130 630 62 HOH HOH . E 4 HOH A 131 631 55 HOH HOH . E 4 HOH A 132 632 90 HOH HOH . E 4 HOH A 133 633 199 HOH HOH . E 4 HOH A 134 634 83 HOH HOH . E 4 HOH A 135 635 163 HOH HOH . E 4 HOH A 136 636 238 HOH HOH . E 4 HOH A 137 637 98 HOH HOH . E 4 HOH A 138 638 18 HOH HOH . E 4 HOH A 139 639 47 HOH HOH . E 4 HOH A 140 640 170 HOH HOH . E 4 HOH A 141 641 111 HOH HOH . E 4 HOH A 142 642 181 HOH HOH . E 4 HOH A 143 643 101 HOH HOH . E 4 HOH A 144 644 147 HOH HOH . E 4 HOH A 145 645 146 HOH HOH . E 4 HOH A 146 646 227 HOH HOH . E 4 HOH A 147 647 73 HOH HOH . E 4 HOH A 148 648 116 HOH HOH . E 4 HOH A 149 649 69 HOH HOH . E 4 HOH A 150 650 20 HOH HOH . E 4 HOH A 151 651 187 HOH HOH . E 4 HOH A 152 652 203 HOH HOH . E 4 HOH A 153 653 38 HOH HOH . E 4 HOH A 154 654 85 HOH HOH . E 4 HOH A 155 655 49 HOH HOH . E 4 HOH A 156 656 148 HOH HOH . E 4 HOH A 157 657 15 HOH HOH . E 4 HOH A 158 658 198 HOH HOH . E 4 HOH A 159 659 119 HOH HOH . E 4 HOH A 160 660 128 HOH HOH . E 4 HOH A 161 661 196 HOH HOH . E 4 HOH A 162 662 245 HOH HOH . E 4 HOH A 163 663 137 HOH HOH . E 4 HOH A 164 664 211 HOH HOH . E 4 HOH A 165 665 46 HOH HOH . E 4 HOH A 166 666 149 HOH HOH . E 4 HOH A 167 667 67 HOH HOH . E 4 HOH A 168 668 151 HOH HOH . E 4 HOH A 169 669 105 HOH HOH . E 4 HOH A 170 670 127 HOH HOH . E 4 HOH A 171 671 135 HOH HOH . E 4 HOH A 172 672 51 HOH HOH . E 4 HOH A 173 673 247 HOH HOH . E 4 HOH A 174 674 213 HOH HOH . E 4 HOH A 175 675 208 HOH HOH . E 4 HOH A 176 676 53 HOH HOH . E 4 HOH A 177 677 52 HOH HOH . E 4 HOH A 178 678 210 HOH HOH . E 4 HOH A 179 679 237 HOH HOH . E 4 HOH A 180 680 230 HOH HOH . E 4 HOH A 181 681 28 HOH HOH . E 4 HOH A 182 682 95 HOH HOH . E 4 HOH A 183 683 194 HOH HOH . E 4 HOH A 184 684 193 HOH HOH . E 4 HOH A 185 685 216 HOH HOH . E 4 HOH A 186 686 171 HOH HOH . E 4 HOH A 187 687 64 HOH HOH . E 4 HOH A 188 688 240 HOH HOH . E 4 HOH A 189 689 154 HOH HOH . E 4 HOH A 190 690 156 HOH HOH . E 4 HOH A 191 691 76 HOH HOH . E 4 HOH A 192 692 121 HOH HOH . E 4 HOH A 193 693 57 HOH HOH . E 4 HOH A 194 694 251 HOH HOH . E 4 HOH A 195 695 68 HOH HOH . E 4 HOH A 196 696 243 HOH HOH . E 4 HOH A 197 697 48 HOH HOH . E 4 HOH A 198 698 192 HOH HOH . E 4 HOH A 199 699 231 HOH HOH . E 4 HOH A 200 700 197 HOH HOH . E 4 HOH A 201 701 75 HOH HOH . E 4 HOH A 202 702 29 HOH HOH . E 4 HOH A 203 703 241 HOH HOH . E 4 HOH A 204 704 178 HOH HOH . E 4 HOH A 205 705 239 HOH HOH . E 4 HOH A 206 706 177 HOH HOH . E 4 HOH A 207 707 173 HOH HOH . E 4 HOH A 208 708 200 HOH HOH . E 4 HOH A 209 709 139 HOH HOH . E 4 HOH A 210 710 164 HOH HOH . E 4 HOH A 211 711 72 HOH HOH . E 4 HOH A 212 712 113 HOH HOH . E 4 HOH A 213 713 117 HOH HOH . E 4 HOH A 214 714 232 HOH HOH . E 4 HOH A 215 715 102 HOH HOH . E 4 HOH A 216 716 176 HOH HOH . E 4 HOH A 217 717 219 HOH HOH . E 4 HOH A 218 718 246 HOH HOH . E 4 HOH A 219 719 218 HOH HOH . E 4 HOH A 220 720 225 HOH HOH . E 4 HOH A 221 721 217 HOH HOH . E 4 HOH A 222 722 195 HOH HOH . E 4 HOH A 223 723 209 HOH HOH . E 4 HOH A 224 724 88 HOH HOH . E 4 HOH A 225 725 103 HOH HOH . E 4 HOH A 226 726 65 HOH HOH . E 4 HOH A 227 727 112 HOH HOH . E 4 HOH A 228 728 131 HOH HOH . E 4 HOH A 229 729 161 HOH HOH . E 4 HOH A 230 730 252 HOH HOH . E 4 HOH A 231 731 118 HOH HOH . E 4 HOH A 232 732 172 HOH HOH . E 4 HOH A 233 733 249 HOH HOH . E 4 HOH A 234 734 224 HOH HOH . E 4 HOH A 235 735 141 HOH HOH . E 4 HOH A 236 736 134 HOH HOH . E 4 HOH A 237 737 250 HOH HOH . E 4 HOH A 238 738 138 HOH HOH . E 4 HOH A 239 739 223 HOH HOH . E 4 HOH A 240 740 207 HOH HOH . E 4 HOH A 241 741 180 HOH HOH . E 4 HOH A 242 742 66 HOH HOH . E 4 HOH A 243 743 253 HOH HOH . E 4 HOH A 244 744 202 HOH HOH . E 4 HOH A 245 745 166 HOH HOH . E 4 HOH A 246 746 169 HOH HOH . E 4 HOH A 247 747 182 HOH HOH . E 4 HOH A 248 748 190 HOH HOH . E 4 HOH A 249 749 222 HOH HOH . E 4 HOH A 250 750 229 HOH HOH . E 4 HOH A 251 751 158 HOH HOH . E 4 HOH A 252 752 189 HOH HOH . E 4 HOH A 253 753 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 21.227 -40.912 -22.671 1 19.02 ? C TRS 403 A 1 HETATM 2 C C1 TRS . . . D 3 20.718 -39.836 -21.734 1 46.6 ? C1 TRS 403 A 1 HETATM 3 C C2 TRS . . . D 3 20.619 -40.844 -24.035 1 93.51 ? C2 TRS 403 A 1 HETATM 4 C C3 TRS . . . D 3 21.039 -42.265 -22.067 1 62.23 ? C3 TRS 403 A 1 HETATM 5 N N TRS . . . D 3 22.703 -40.722 -22.79 1 65.38 ? N TRS 403 A 1 HETATM 6 O O1 TRS . . . D 3 21.794 -39 -21.385 1 80.81 ? O1 TRS 403 A 1 HETATM 7 O O2 TRS . . . D 3 20.849 -39.526 -24.499 1 50.05 ? O2 TRS 403 A 1 HETATM 8 O O3 TRS . . . D 3 21.609 -42.183 -20.84 1 33.56 ? O3 TRS 403 A 1 HETATM 9 H H11 TRS . . . D 3 20.302 -40.301 -20.838 1 55.92 ? H11 TRS 403 A 1 HETATM 10 H H12 TRS . . . D 3 19.942 -39.254 -22.236 1 55.92 ? H12 TRS 403 A 1 HETATM 11 H H21 TRS . . . D 3 19.55 -41.058 -23.969 1 112.21 ? H21 TRS 403 A 1 HETATM 12 H H22 TRS . . . D 3 21.097 -41.58 -24.684 1 112.21 ? H22 TRS 403 A 1 HETATM 13 H H31 TRS . . . D 3 19.981 -42.516 -21.961 1 74.67 ? H31 TRS 403 A 1 HETATM 14 H H32 TRS . . . D 3 21.54 -43.04 -22.651 1 74.67 ? H32 TRS 403 A 1 HETATM 15 H HN1 TRS . . . D 3 23.134 -40.777 -21.853 1 78.45 ? HN1 TRS 403 A 1 HETATM 16 H HN2 TRS . . . D 3 23.097 -41.461 -23.395 1 78.45 ? HN2 TRS 403 A 1 HETATM 17 H HN3 TRS . . . D 3 22.898 -39.796 -23.205 1 78.45 ? HN3 TRS 403 A 1 HETATM 18 H HO1 TRS . . . D 3 21.483 -38.307 -20.787 1 96.97 ? HO1 TRS 403 A 1 HETATM 19 H HO2 TRS . . . D 3 20.473 -39.426 -25.385 1 60.06 ? HO2 TRS 403 A 1 HETATM 20 H HO3 TRS . . . D 3 21.965 -41.294 -20.71 1 40.27 ? HO3 TRS 403 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #