data_5QG0 # _model_server_result.job_id n0HaJgaYxMpSxQqtUYjVyQ _model_server_result.datetime_utc '2025-08-04 22:56:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QG0 # _exptl.entry_id 5QG0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QG0 _cell.length_a 90.044 _cell.length_b 90.044 _cell.length_c 106.942 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 364 n n C C2 TRS sing 365 n n C C3 TRS sing 366 n n C N TRS sing 367 n n C1 O1 TRS sing 368 n n C1 H11 TRS sing 369 n n C1 H12 TRS sing 370 n n C2 O2 TRS sing 371 n n C2 H21 TRS sing 372 n n C2 H22 TRS sing 373 n n C3 O3 TRS sing 374 n n C3 H31 TRS sing 375 n n C3 H32 TRS sing 376 n n N HN1 TRS sing 377 n n N HN2 TRS sing 378 n n N HN3 TRS sing 379 n n O1 HO1 TRS sing 380 n n O2 HO2 TRS sing 381 n n O3 HO3 TRS sing 382 n n # _atom_sites.entry_id 5QG0 _atom_sites.fract_transf_matrix[1][1] 0.011106 _atom_sites.fract_transf_matrix[1][2] 0.006412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JP4 A 1 401 1 JP4 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 141 HOH HOH . D 4 HOH A 2 502 177 HOH HOH . D 4 HOH A 3 503 143 HOH HOH . D 4 HOH A 4 504 210 HOH HOH . D 4 HOH A 5 505 126 HOH HOH . D 4 HOH A 6 506 153 HOH HOH . D 4 HOH A 7 507 234 HOH HOH . D 4 HOH A 8 508 228 HOH HOH . D 4 HOH A 9 509 244 HOH HOH . D 4 HOH A 10 510 40 HOH HOH . D 4 HOH A 11 511 164 HOH HOH . D 4 HOH A 12 512 156 HOH HOH . D 4 HOH A 13 513 212 HOH HOH . D 4 HOH A 14 514 155 HOH HOH . D 4 HOH A 15 515 169 HOH HOH . D 4 HOH A 16 516 137 HOH HOH . D 4 HOH A 17 517 226 HOH HOH . D 4 HOH A 18 518 86 HOH HOH . D 4 HOH A 19 519 230 HOH HOH . D 4 HOH A 20 520 58 HOH HOH . D 4 HOH A 21 521 152 HOH HOH . D 4 HOH A 22 522 26 HOH HOH . D 4 HOH A 23 523 142 HOH HOH . D 4 HOH A 24 524 27 HOH HOH . D 4 HOH A 25 525 6 HOH HOH . D 4 HOH A 26 526 154 HOH HOH . D 4 HOH A 27 527 174 HOH HOH . D 4 HOH A 28 528 115 HOH HOH . D 4 HOH A 29 529 140 HOH HOH . D 4 HOH A 30 530 38 HOH HOH . D 4 HOH A 31 531 22 HOH HOH . D 4 HOH A 32 532 69 HOH HOH . D 4 HOH A 33 533 20 HOH HOH . D 4 HOH A 34 534 245 HOH HOH . D 4 HOH A 35 535 72 HOH HOH . D 4 HOH A 36 536 97 HOH HOH . D 4 HOH A 37 537 14 HOH HOH . D 4 HOH A 38 538 131 HOH HOH . D 4 HOH A 39 539 123 HOH HOH . D 4 HOH A 40 540 3 HOH HOH . D 4 HOH A 41 541 11 HOH HOH . D 4 HOH A 42 542 241 HOH HOH . D 4 HOH A 43 543 62 HOH HOH . D 4 HOH A 44 544 119 HOH HOH . D 4 HOH A 45 545 144 HOH HOH . D 4 HOH A 46 546 171 HOH HOH . D 4 HOH A 47 547 57 HOH HOH . D 4 HOH A 48 548 37 HOH HOH . D 4 HOH A 49 549 44 HOH HOH . D 4 HOH A 50 550 46 HOH HOH . D 4 HOH A 51 551 76 HOH HOH . D 4 HOH A 52 552 90 HOH HOH . D 4 HOH A 53 553 4 HOH HOH . D 4 HOH A 54 554 18 HOH HOH . D 4 HOH A 55 555 157 HOH HOH . D 4 HOH A 56 556 8 HOH HOH . D 4 HOH A 57 557 31 HOH HOH . D 4 HOH A 58 558 114 HOH HOH . D 4 HOH A 59 559 103 HOH HOH . D 4 HOH A 60 560 1 HOH HOH . D 4 HOH A 61 561 32 HOH HOH . D 4 HOH A 62 562 68 HOH HOH . D 4 HOH A 63 563 5 HOH HOH . D 4 HOH A 64 564 125 HOH HOH . D 4 HOH A 65 565 239 HOH HOH . D 4 HOH A 66 566 45 HOH HOH . D 4 HOH A 67 567 25 HOH HOH . D 4 HOH A 68 568 13 HOH HOH . D 4 HOH A 69 569 163 HOH HOH . D 4 HOH A 70 570 54 HOH HOH . D 4 HOH A 71 571 93 HOH HOH . D 4 HOH A 72 572 42 HOH HOH . D 4 HOH A 73 573 17 HOH HOH . D 4 HOH A 74 574 95 HOH HOH . D 4 HOH A 75 575 7 HOH HOH . D 4 HOH A 76 576 189 HOH HOH . D 4 HOH A 77 577 149 HOH HOH . D 4 HOH A 78 578 61 HOH HOH . D 4 HOH A 79 579 24 HOH HOH . D 4 HOH A 80 580 33 HOH HOH . D 4 HOH A 81 581 205 HOH HOH . D 4 HOH A 82 582 145 HOH HOH . D 4 HOH A 83 583 53 HOH HOH . D 4 HOH A 84 584 134 HOH HOH . D 4 HOH A 85 585 80 HOH HOH . D 4 HOH A 86 586 81 HOH HOH . D 4 HOH A 87 587 178 HOH HOH . D 4 HOH A 88 588 12 HOH HOH . D 4 HOH A 89 589 128 HOH HOH . D 4 HOH A 90 590 75 HOH HOH . D 4 HOH A 91 591 39 HOH HOH . D 4 HOH A 92 592 84 HOH HOH . D 4 HOH A 93 593 56 HOH HOH . D 4 HOH A 94 594 34 HOH HOH . D 4 HOH A 95 595 28 HOH HOH . D 4 HOH A 96 596 43 HOH HOH . D 4 HOH A 97 597 108 HOH HOH . D 4 HOH A 98 598 188 HOH HOH . D 4 HOH A 99 599 127 HOH HOH . D 4 HOH A 100 600 9 HOH HOH . D 4 HOH A 101 601 146 HOH HOH . D 4 HOH A 102 602 88 HOH HOH . D 4 HOH A 103 603 77 HOH HOH . D 4 HOH A 104 604 225 HOH HOH . D 4 HOH A 105 605 112 HOH HOH . D 4 HOH A 106 606 109 HOH HOH . D 4 HOH A 107 607 170 HOH HOH . D 4 HOH A 108 608 10 HOH HOH . D 4 HOH A 109 609 52 HOH HOH . D 4 HOH A 110 610 124 HOH HOH . D 4 HOH A 111 611 98 HOH HOH . D 4 HOH A 112 612 59 HOH HOH . D 4 HOH A 113 613 192 HOH HOH . D 4 HOH A 114 614 121 HOH HOH . D 4 HOH A 115 615 105 HOH HOH . D 4 HOH A 116 616 224 HOH HOH . D 4 HOH A 117 617 215 HOH HOH . D 4 HOH A 118 618 2 HOH HOH . D 4 HOH A 119 619 147 HOH HOH . D 4 HOH A 120 620 87 HOH HOH . D 4 HOH A 121 621 19 HOH HOH . D 4 HOH A 122 622 172 HOH HOH . D 4 HOH A 123 623 35 HOH HOH . D 4 HOH A 124 624 200 HOH HOH . D 4 HOH A 125 625 16 HOH HOH . D 4 HOH A 126 626 94 HOH HOH . D 4 HOH A 127 627 168 HOH HOH . D 4 HOH A 128 628 135 HOH HOH . D 4 HOH A 129 629 91 HOH HOH . D 4 HOH A 130 630 96 HOH HOH . D 4 HOH A 131 631 41 HOH HOH . D 4 HOH A 132 632 193 HOH HOH . D 4 HOH A 133 633 60 HOH HOH . D 4 HOH A 134 634 101 HOH HOH . D 4 HOH A 135 635 116 HOH HOH . D 4 HOH A 136 636 79 HOH HOH . D 4 HOH A 137 637 15 HOH HOH . D 4 HOH A 138 638 165 HOH HOH . D 4 HOH A 139 639 132 HOH HOH . D 4 HOH A 140 640 23 HOH HOH . D 4 HOH A 141 641 36 HOH HOH . D 4 HOH A 142 642 240 HOH HOH . D 4 HOH A 143 643 158 HOH HOH . D 4 HOH A 144 644 204 HOH HOH . D 4 HOH A 145 645 182 HOH HOH . D 4 HOH A 146 646 89 HOH HOH . D 4 HOH A 147 647 190 HOH HOH . D 4 HOH A 148 648 21 HOH HOH . D 4 HOH A 149 649 78 HOH HOH . D 4 HOH A 150 650 106 HOH HOH . D 4 HOH A 151 651 236 HOH HOH . D 4 HOH A 152 652 82 HOH HOH . D 4 HOH A 153 653 186 HOH HOH . D 4 HOH A 154 654 99 HOH HOH . D 4 HOH A 155 655 223 HOH HOH . D 4 HOH A 156 656 47 HOH HOH . D 4 HOH A 157 657 113 HOH HOH . D 4 HOH A 158 658 120 HOH HOH . D 4 HOH A 159 659 50 HOH HOH . D 4 HOH A 160 660 51 HOH HOH . D 4 HOH A 161 661 49 HOH HOH . D 4 HOH A 162 662 110 HOH HOH . D 4 HOH A 163 663 227 HOH HOH . D 4 HOH A 164 664 184 HOH HOH . D 4 HOH A 165 665 65 HOH HOH . D 4 HOH A 166 666 203 HOH HOH . D 4 HOH A 167 667 138 HOH HOH . D 4 HOH A 168 668 71 HOH HOH . D 4 HOH A 169 669 233 HOH HOH . D 4 HOH A 170 670 235 HOH HOH . D 4 HOH A 171 671 111 HOH HOH . D 4 HOH A 172 672 83 HOH HOH . D 4 HOH A 173 673 201 HOH HOH . D 4 HOH A 174 674 104 HOH HOH . D 4 HOH A 175 675 92 HOH HOH . D 4 HOH A 176 676 207 HOH HOH . D 4 HOH A 177 677 67 HOH HOH . D 4 HOH A 178 678 237 HOH HOH . D 4 HOH A 179 679 48 HOH HOH . D 4 HOH A 180 680 29 HOH HOH . D 4 HOH A 181 681 197 HOH HOH . D 4 HOH A 182 682 66 HOH HOH . D 4 HOH A 183 683 122 HOH HOH . D 4 HOH A 184 684 175 HOH HOH . D 4 HOH A 185 685 150 HOH HOH . D 4 HOH A 186 686 199 HOH HOH . D 4 HOH A 187 687 74 HOH HOH . D 4 HOH A 188 688 220 HOH HOH . D 4 HOH A 189 689 129 HOH HOH . D 4 HOH A 190 690 206 HOH HOH . D 4 HOH A 191 691 181 HOH HOH . D 4 HOH A 192 692 216 HOH HOH . D 4 HOH A 193 693 151 HOH HOH . D 4 HOH A 194 694 107 HOH HOH . D 4 HOH A 195 695 180 HOH HOH . D 4 HOH A 196 696 55 HOH HOH . D 4 HOH A 197 697 159 HOH HOH . D 4 HOH A 198 698 100 HOH HOH . D 4 HOH A 199 699 191 HOH HOH . D 4 HOH A 200 700 176 HOH HOH . D 4 HOH A 201 701 173 HOH HOH . D 4 HOH A 202 702 185 HOH HOH . D 4 HOH A 203 703 73 HOH HOH . D 4 HOH A 204 704 30 HOH HOH . D 4 HOH A 205 705 202 HOH HOH . D 4 HOH A 206 706 166 HOH HOH . D 4 HOH A 207 707 148 HOH HOH . D 4 HOH A 208 708 208 HOH HOH . D 4 HOH A 209 709 117 HOH HOH . D 4 HOH A 210 710 209 HOH HOH . D 4 HOH A 211 711 211 HOH HOH . D 4 HOH A 212 712 70 HOH HOH . D 4 HOH A 213 713 214 HOH HOH . D 4 HOH A 214 714 238 HOH HOH . D 4 HOH A 215 715 183 HOH HOH . D 4 HOH A 216 716 102 HOH HOH . D 4 HOH A 217 717 232 HOH HOH . D 4 HOH A 218 718 167 HOH HOH . D 4 HOH A 219 719 221 HOH HOH . D 4 HOH A 220 720 85 HOH HOH . D 4 HOH A 221 721 63 HOH HOH . D 4 HOH A 222 722 194 HOH HOH . D 4 HOH A 223 723 242 HOH HOH . D 4 HOH A 224 724 130 HOH HOH . D 4 HOH A 225 725 160 HOH HOH . D 4 HOH A 226 726 133 HOH HOH . D 4 HOH A 227 727 136 HOH HOH . D 4 HOH A 228 728 243 HOH HOH . D 4 HOH A 229 729 196 HOH HOH . D 4 HOH A 230 730 187 HOH HOH . D 4 HOH A 231 731 222 HOH HOH . D 4 HOH A 232 732 139 HOH HOH . D 4 HOH A 233 733 231 HOH HOH . D 4 HOH A 234 734 118 HOH HOH . D 4 HOH A 235 735 64 HOH HOH . D 4 HOH A 236 736 218 HOH HOH . D 4 HOH A 237 737 198 HOH HOH . D 4 HOH A 238 738 229 HOH HOH . D 4 HOH A 239 739 213 HOH HOH . D 4 HOH A 240 740 161 HOH HOH . D 4 HOH A 241 741 219 HOH HOH . D 4 HOH A 242 742 162 HOH HOH . D 4 HOH A 243 743 217 HOH HOH . D 4 HOH A 244 744 195 HOH HOH . D 4 HOH A 245 745 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 21.385 -41.097 -22.736 1 21.52 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 20.879 -40.001 -21.806 1 43.09 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 20.778 -41.014 -24.098 1 90.68 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 21.183 -42.453 -22.151 1 64.17 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 22.871 -40.901 -22.865 1 67.46 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 21.95 -39.152 -21.476 1 122.77 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 20.958 -39.68 -24.547 1 50.33 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 21.706 -42.336 -20.906 1 33.36 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 20.473 -40.452 -20.899 1 51.71 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 20.096 -39.429 -22.31 1 51.71 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 19.716 -41.263 -24.04 1 108.81 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 21.28 -41.718 -24.764 1 108.81 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 20.127 -42.723 -22.079 1 77 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 21.72 -43.229 -22.701 1 77 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 23.309 -40.968 -21.932 1 80.95 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 23.262 -41.63 -23.483 1 80.95 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 23.061 -39.969 -23.269 1 80.95 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 21.637 -38.453 -20.886 1 147.33 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 20.576 -39.583 -25.431 1 60.39 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 22.04 -41.437 -20.78 1 40.03 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #