data_5QG1 # _model_server_result.job_id h2aXhgARHmkhOeN7XX_IzA _model_server_result.datetime_utc '2024-11-13 10:59:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QG1 # _exptl.entry_id 5QG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.303 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-({[(thiophen-2-yl)methyl]amino}methyl)phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QG1 _cell.length_a 90.08 _cell.length_b 90.08 _cell.length_c 106.915 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H13 N O S' _chem_comp.formula_weight 219.303 _chem_comp.id JKG _chem_comp.mon_nstd_flag . _chem_comp.name 4-({[(thiophen-2-yl)methyl]amino}methyl)phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S04 C05 JKG sing 173 n y S04 C03 JKG sing 174 n y C13 C14 JKG doub 175 n y C13 C12 JKG sing 176 n y C14 C09 JKG sing 177 n y C05 C01 JKG doub 178 n y O15 C12 JKG sing 179 n n N07 C06 JKG sing 180 n n N07 C08 JKG sing 181 n n C12 C11 JKG doub 182 n y C03 C06 JKG sing 183 n n C03 C02 JKG doub 184 n y C09 C08 JKG sing 185 n n C09 C10 JKG doub 186 n y C01 C02 JKG sing 187 n y C11 C10 JKG sing 188 n y C10 H101 JKG sing 189 n n C13 H131 JKG sing 190 n n C01 H011 JKG sing 191 n n C02 H021 JKG sing 192 n n C05 H051 JKG sing 193 n n C06 H062 JKG sing 194 n n C06 H061 JKG sing 195 n n N07 H071 JKG sing 196 n n C08 H081 JKG sing 197 n n C08 H082 JKG sing 198 n n C11 H111 JKG sing 199 n n C14 H141 JKG sing 200 n n O15 H151 JKG sing 201 n n # _atom_sites.entry_id 5QG1 _atom_sites.fract_transf_matrix[1][1] 0.011101 _atom_sites.fract_transf_matrix[1][2] 0.006409 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JKG A 1 401 2 JKG LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 101 HOH HOH . D 4 HOH A 2 502 115 HOH HOH . D 4 HOH A 3 503 37 HOH HOH . D 4 HOH A 4 504 141 HOH HOH . D 4 HOH A 5 505 133 HOH HOH . D 4 HOH A 6 506 13 HOH HOH . D 4 HOH A 7 507 124 HOH HOH . D 4 HOH A 8 508 160 HOH HOH . D 4 HOH A 9 509 55 HOH HOH . D 4 HOH A 10 510 163 HOH HOH . D 4 HOH A 11 511 131 HOH HOH . D 4 HOH A 12 512 165 HOH HOH . D 4 HOH A 13 513 25 HOH HOH . D 4 HOH A 14 514 87 HOH HOH . D 4 HOH A 15 515 5 HOH HOH . D 4 HOH A 16 516 153 HOH HOH . D 4 HOH A 17 517 62 HOH HOH . D 4 HOH A 18 518 16 HOH HOH . D 4 HOH A 19 519 58 HOH HOH . D 4 HOH A 20 520 45 HOH HOH . D 4 HOH A 21 521 135 HOH HOH . D 4 HOH A 22 522 90 HOH HOH . D 4 HOH A 23 523 80 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 20 HOH HOH . D 4 HOH A 26 526 18 HOH HOH . D 4 HOH A 27 527 105 HOH HOH . D 4 HOH A 28 528 4 HOH HOH . D 4 HOH A 29 529 72 HOH HOH . D 4 HOH A 30 530 95 HOH HOH . D 4 HOH A 31 531 104 HOH HOH . D 4 HOH A 32 532 54 HOH HOH . D 4 HOH A 33 533 51 HOH HOH . D 4 HOH A 34 534 110 HOH HOH . D 4 HOH A 35 535 78 HOH HOH . D 4 HOH A 36 536 75 HOH HOH . D 4 HOH A 37 537 64 HOH HOH . D 4 HOH A 38 538 46 HOH HOH . D 4 HOH A 39 539 143 HOH HOH . D 4 HOH A 40 540 60 HOH HOH . D 4 HOH A 41 541 107 HOH HOH . D 4 HOH A 42 542 7 HOH HOH . D 4 HOH A 43 543 6 HOH HOH . D 4 HOH A 44 544 3 HOH HOH . D 4 HOH A 45 545 23 HOH HOH . D 4 HOH A 46 546 28 HOH HOH . D 4 HOH A 47 547 76 HOH HOH . D 4 HOH A 48 548 50 HOH HOH . D 4 HOH A 49 549 123 HOH HOH . D 4 HOH A 50 550 26 HOH HOH . D 4 HOH A 51 551 47 HOH HOH . D 4 HOH A 52 552 86 HOH HOH . D 4 HOH A 53 553 41 HOH HOH . D 4 HOH A 54 554 96 HOH HOH . D 4 HOH A 55 555 122 HOH HOH . D 4 HOH A 56 556 99 HOH HOH . D 4 HOH A 57 557 35 HOH HOH . D 4 HOH A 58 558 12 HOH HOH . D 4 HOH A 59 559 39 HOH HOH . D 4 HOH A 60 560 147 HOH HOH . D 4 HOH A 61 561 129 HOH HOH . D 4 HOH A 62 562 52 HOH HOH . D 4 HOH A 63 563 9 HOH HOH . D 4 HOH A 64 564 91 HOH HOH . D 4 HOH A 65 565 11 HOH HOH . D 4 HOH A 66 566 31 HOH HOH . D 4 HOH A 67 567 21 HOH HOH . D 4 HOH A 68 568 152 HOH HOH . D 4 HOH A 69 569 114 HOH HOH . D 4 HOH A 70 570 10 HOH HOH . D 4 HOH A 71 571 68 HOH HOH . D 4 HOH A 72 572 1 HOH HOH . D 4 HOH A 73 573 71 HOH HOH . D 4 HOH A 74 574 32 HOH HOH . D 4 HOH A 75 575 53 HOH HOH . D 4 HOH A 76 576 118 HOH HOH . D 4 HOH A 77 577 38 HOH HOH . D 4 HOH A 78 578 57 HOH HOH . D 4 HOH A 79 579 34 HOH HOH . D 4 HOH A 80 580 116 HOH HOH . D 4 HOH A 81 581 15 HOH HOH . D 4 HOH A 82 582 134 HOH HOH . D 4 HOH A 83 583 22 HOH HOH . D 4 HOH A 84 584 82 HOH HOH . D 4 HOH A 85 585 117 HOH HOH . D 4 HOH A 86 586 29 HOH HOH . D 4 HOH A 87 587 85 HOH HOH . D 4 HOH A 88 588 30 HOH HOH . D 4 HOH A 89 589 177 HOH HOH . D 4 HOH A 90 590 2 HOH HOH . D 4 HOH A 91 591 14 HOH HOH . D 4 HOH A 92 592 159 HOH HOH . D 4 HOH A 93 593 33 HOH HOH . D 4 HOH A 94 594 67 HOH HOH . D 4 HOH A 95 595 70 HOH HOH . D 4 HOH A 96 596 43 HOH HOH . D 4 HOH A 97 597 73 HOH HOH . D 4 HOH A 98 598 103 HOH HOH . D 4 HOH A 99 599 100 HOH HOH . D 4 HOH A 100 600 17 HOH HOH . D 4 HOH A 101 601 162 HOH HOH . D 4 HOH A 102 602 8 HOH HOH . D 4 HOH A 103 603 169 HOH HOH . D 4 HOH A 104 604 167 HOH HOH . D 4 HOH A 105 605 49 HOH HOH . D 4 HOH A 106 606 92 HOH HOH . D 4 HOH A 107 607 69 HOH HOH . D 4 HOH A 108 608 148 HOH HOH . D 4 HOH A 109 609 119 HOH HOH . D 4 HOH A 110 610 166 HOH HOH . D 4 HOH A 111 611 145 HOH HOH . D 4 HOH A 112 612 89 HOH HOH . D 4 HOH A 113 613 83 HOH HOH . D 4 HOH A 114 614 40 HOH HOH . D 4 HOH A 115 615 161 HOH HOH . D 4 HOH A 116 616 74 HOH HOH . D 4 HOH A 117 617 98 HOH HOH . D 4 HOH A 118 618 140 HOH HOH . D 4 HOH A 119 619 59 HOH HOH . D 4 HOH A 120 620 154 HOH HOH . D 4 HOH A 121 621 150 HOH HOH . D 4 HOH A 122 622 113 HOH HOH . D 4 HOH A 123 623 44 HOH HOH . D 4 HOH A 124 624 170 HOH HOH . D 4 HOH A 125 625 93 HOH HOH . D 4 HOH A 126 626 130 HOH HOH . D 4 HOH A 127 627 79 HOH HOH . D 4 HOH A 128 628 19 HOH HOH . D 4 HOH A 129 629 120 HOH HOH . D 4 HOH A 130 630 168 HOH HOH . D 4 HOH A 131 631 176 HOH HOH . D 4 HOH A 132 632 121 HOH HOH . D 4 HOH A 133 633 81 HOH HOH . D 4 HOH A 134 634 146 HOH HOH . D 4 HOH A 135 635 111 HOH HOH . D 4 HOH A 136 636 61 HOH HOH . D 4 HOH A 137 637 127 HOH HOH . D 4 HOH A 138 638 137 HOH HOH . D 4 HOH A 139 639 106 HOH HOH . D 4 HOH A 140 640 36 HOH HOH . D 4 HOH A 141 641 66 HOH HOH . D 4 HOH A 142 642 151 HOH HOH . D 4 HOH A 143 643 158 HOH HOH . D 4 HOH A 144 644 138 HOH HOH . D 4 HOH A 145 645 172 HOH HOH . D 4 HOH A 146 646 125 HOH HOH . D 4 HOH A 147 647 84 HOH HOH . D 4 HOH A 148 648 173 HOH HOH . D 4 HOH A 149 649 42 HOH HOH . D 4 HOH A 150 650 164 HOH HOH . D 4 HOH A 151 651 77 HOH HOH . D 4 HOH A 152 652 136 HOH HOH . D 4 HOH A 153 653 48 HOH HOH . D 4 HOH A 154 654 102 HOH HOH . D 4 HOH A 155 655 27 HOH HOH . D 4 HOH A 156 656 157 HOH HOH . D 4 HOH A 157 657 108 HOH HOH . D 4 HOH A 158 658 97 HOH HOH . D 4 HOH A 159 659 65 HOH HOH . D 4 HOH A 160 660 156 HOH HOH . D 4 HOH A 161 661 174 HOH HOH . D 4 HOH A 162 662 149 HOH HOH . D 4 HOH A 163 663 94 HOH HOH . D 4 HOH A 164 664 63 HOH HOH . D 4 HOH A 165 665 155 HOH HOH . D 4 HOH A 166 666 88 HOH HOH . D 4 HOH A 167 667 175 HOH HOH . D 4 HOH A 168 668 112 HOH HOH . D 4 HOH A 169 669 144 HOH HOH . D 4 HOH A 170 670 132 HOH HOH . D 4 HOH A 171 671 128 HOH HOH . D 4 HOH A 172 672 56 HOH HOH . D 4 HOH A 173 673 171 HOH HOH . D 4 HOH A 174 674 142 HOH HOH . D 4 HOH A 175 675 109 HOH HOH . D 4 HOH A 176 676 139 HOH HOH . D 4 HOH A 177 677 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JKG . C . B 2 -33.873 8.834 20.037 0.23 52.26 ? C10 JKG 401 A 1 HETATM 2 C C10 JKG . D . B 2 -33.873 8.834 20.037 0.23 52.26 ? C10 JKG 401 A 1 HETATM 3 C C13 JKG . C . B 2 -33.032 10.303 17.972 0.23 37.03 ? C13 JKG 401 A 1 HETATM 4 C C13 JKG . D . B 2 -33.032 10.303 17.972 0.23 37.03 ? C13 JKG 401 A 1 HETATM 5 C C01 JKG . C . B 2 -38.384 3.455 19.749 0.23 56.99 ? C01 JKG 401 A 1 HETATM 6 C C01 JKG . D . B 2 -38.384 3.455 19.749 0.23 56.99 ? C01 JKG 401 A 1 HETATM 7 C C02 JKG . C . B 2 -38.2 4.761 20.101 0.23 48.6 ? C02 JKG 401 A 1 HETATM 8 C C02 JKG . D . B 2 -38.2 4.761 20.101 0.23 48.6 ? C02 JKG 401 A 1 HETATM 9 C C03 JKG . C . B 2 -38.118 5.573 19.049 0.23 43.87 ? C03 JKG 401 A 1 HETATM 10 C C03 JKG . D . B 2 -38.118 5.573 19.049 0.23 43.87 ? C03 JKG 401 A 1 HETATM 11 S S04 JKG . C . B 2 -38.229 4.733 17.676 0.23 48.57 ? S04 JKG 401 A 1 HETATM 12 S S04 JKG . D . B 2 -38.229 4.733 17.676 0.23 48.57 ? S04 JKG 401 A 1 HETATM 13 C C05 JKG . C . B 2 -38.388 3.297 18.424 0.23 67.71 ? C05 JKG 401 A 1 HETATM 14 C C05 JKG . D . B 2 -38.388 3.297 18.424 0.23 67.71 ? C05 JKG 401 A 1 HETATM 15 C C06 JKG . C . B 2 -37.915 7.043 19.122 0.23 37.04 ? C06 JKG 401 A 1 HETATM 16 C C06 JKG . D . B 2 -37.915 7.043 19.122 0.23 37.04 ? C06 JKG 401 A 1 HETATM 17 N N07 JKG . C . B 2 -36.437 7.472 18.931 0.23 47.71 ? N07 JKG 401 A 1 HETATM 18 N N07 JKG . D . B 2 -36.437 7.472 18.931 0.23 47.71 ? N07 JKG 401 A 1 HETATM 19 C C08 JKG . C . B 2 -36.193 8.898 19.24 0.23 39.21 ? C08 JKG 401 A 1 HETATM 20 C C08 JKG . D . B 2 -36.193 8.898 19.24 0.23 39.21 ? C08 JKG 401 A 1 HETATM 21 C C09 JKG . C . B 2 -34.778 9.263 19.123 0.23 36.26 ? C09 JKG 401 A 1 HETATM 22 C C09 JKG . D . B 2 -34.778 9.263 19.123 0.23 36.26 ? C09 JKG 401 A 1 HETATM 23 C C11 JKG . C . B 2 -32.574 9.141 19.971 0.23 53.91 ? C11 JKG 401 A 1 HETATM 24 C C11 JKG . D . B 2 -32.574 9.141 19.971 0.23 53.91 ? C11 JKG 401 A 1 HETATM 25 C C12 JKG . C . B 2 -32.118 9.91 18.947 0.23 59.86 ? C12 JKG 401 A 1 HETATM 26 C C12 JKG . D . B 2 -32.118 9.91 18.947 0.23 59.86 ? C12 JKG 401 A 1 HETATM 27 C C14 JKG . C . B 2 -34.295 9.971 18.101 0.23 29.53 ? C14 JKG 401 A 1 HETATM 28 C C14 JKG . D . B 2 -34.295 9.971 18.101 0.23 29.53 ? C14 JKG 401 A 1 HETATM 29 O O15 JKG . C . B 2 -30.855 10.211 18.828 0.23 56.31 ? O15 JKG 401 A 1 HETATM 30 O O15 JKG . D . B 2 -30.855 10.211 18.828 0.23 56.31 ? O15 JKG 401 A 1 HETATM 31 H H101 JKG . C . B 2 -34.215 8.213 20.86 0.23 62.71 ? H101 JKG 401 A 1 HETATM 32 H H101 JKG . D . B 2 -34.215 8.213 20.86 0.23 62.71 ? H101 JKG 401 A 1 HETATM 33 H H131 JKG . C . B 2 -32.644 10.863 17.123 0.23 44.44 ? H131 JKG 401 A 1 HETATM 34 H H131 JKG . D . B 2 -32.644 10.863 17.123 0.23 44.44 ? H131 JKG 401 A 1 HETATM 35 H H011 JKG . C . B 2 -38.511 2.651 20.481 0.23 68.39 ? H011 JKG 401 A 1 HETATM 36 H H011 JKG . D . B 2 -38.511 2.651 20.481 0.23 68.39 ? H011 JKG 401 A 1 HETATM 37 H H021 JKG . C . B 2 -38.135 5.051 21.151 0.23 58.32 ? H021 JKG 401 A 1 HETATM 38 H H021 JKG . D . B 2 -38.135 5.051 21.151 0.23 58.32 ? H021 JKG 401 A 1 HETATM 39 H H051 JKG . C . B 2 -38.488 2.314 17.964 0.23 81.25 ? H051 JKG 401 A 1 HETATM 40 H H051 JKG . D . B 2 -38.488 2.314 17.964 0.23 81.25 ? H051 JKG 401 A 1 HETATM 41 H H062 JKG . C . B 2 -38.521 7.529 18.315 0.23 44.45 ? H062 JKG 401 A 1 HETATM 42 H H062 JKG . D . B 2 -38.521 7.529 18.315 0.23 44.45 ? H062 JKG 401 A 1 HETATM 43 H H061 JKG . C . B 2 -38.25 7.388 20.123 0.23 44.45 ? H061 JKG 401 A 1 HETATM 44 H H061 JKG . D . B 2 -38.25 7.388 20.123 0.23 44.45 ? H061 JKG 401 A 1 HETATM 45 H H071 JKG . C . B 2 -36.149 7.317 17.944 0.23 57.25 ? H071 JKG 401 A 1 HETATM 46 H H071 JKG . D . B 2 -36.149 7.317 17.944 0.23 57.25 ? H071 JKG 401 A 1 HETATM 47 H H081 JKG . C . B 2 -36.501 9.175 20.281 0.23 47.06 ? H081 JKG 401 A 1 HETATM 48 H H081 JKG . D . B 2 -36.501 9.175 20.281 0.23 47.06 ? H081 JKG 401 A 1 HETATM 49 H H082 JKG . C . B 2 -36.744 9.604 18.568 0.23 47.06 ? H082 JKG 401 A 1 HETATM 50 H H082 JKG . D . B 2 -36.744 9.604 18.568 0.23 47.06 ? H082 JKG 401 A 1 HETATM 51 H H111 JKG . C . B 2 -31.922 8.748 20.765 0.23 64.69 ? H111 JKG 401 A 1 HETATM 52 H H111 JKG . D . B 2 -31.922 8.748 20.765 0.23 64.69 ? H111 JKG 401 A 1 HETATM 53 H H141 JKG . C . B 2 -34.983 10.296 17.318 0.23 35.43 ? H141 JKG 401 A 1 HETATM 54 H H141 JKG . D . B 2 -34.983 10.296 17.318 0.23 35.43 ? H141 JKG 401 A 1 HETATM 55 H H151 JKG . C . B 2 -30.712 10.707 18.012 0.23 67.57 ? H151 JKG 401 A 1 HETATM 56 H H151 JKG . D . B 2 -30.712 10.707 18.012 0.23 67.57 ? H151 JKG 401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 56 #