data_5QG2 # _model_server_result.job_id eRiSUFmFf-3L9QWSgvgCuw _model_server_result.datetime_utc '2024-11-01 15:38:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QG2 # _exptl.entry_id 5QG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QG2 _cell.length_a 90.145 _cell.length_b 90.145 _cell.length_c 106.844 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 162 A ASN 162 1_555 A OG1 THR 165 A THR 165 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.374 ? covale ? covale2 A ND2 ASN 162 A ASN 162 1_555 A OG1 THR 165 A THR 165 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # _atom_sites.entry_id 5QG2 _atom_sites.fract_transf_matrix[1][1] 0.011093 _atom_sites.fract_transf_matrix[1][2] 0.006405 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H5A A 1 401 1 H5A LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 199 HOH HOH . D 4 HOH A 2 502 189 HOH HOH . D 4 HOH A 3 503 220 HOH HOH . D 4 HOH A 4 504 158 HOH HOH . D 4 HOH A 5 505 73 HOH HOH . D 4 HOH A 6 506 108 HOH HOH . D 4 HOH A 7 507 149 HOH HOH . D 4 HOH A 8 508 120 HOH HOH . D 4 HOH A 9 509 238 HOH HOH . D 4 HOH A 10 510 143 HOH HOH . D 4 HOH A 11 511 51 HOH HOH . D 4 HOH A 12 512 122 HOH HOH . D 4 HOH A 13 513 168 HOH HOH . D 4 HOH A 14 514 183 HOH HOH . D 4 HOH A 15 515 80 HOH HOH . D 4 HOH A 16 516 148 HOH HOH . D 4 HOH A 17 517 112 HOH HOH . D 4 HOH A 18 518 32 HOH HOH . D 4 HOH A 19 519 107 HOH HOH . D 4 HOH A 20 520 212 HOH HOH . D 4 HOH A 21 521 90 HOH HOH . D 4 HOH A 22 522 142 HOH HOH . D 4 HOH A 23 523 5 HOH HOH . D 4 HOH A 24 524 100 HOH HOH . D 4 HOH A 25 525 11 HOH HOH . D 4 HOH A 26 526 13 HOH HOH . D 4 HOH A 27 527 125 HOH HOH . D 4 HOH A 28 528 52 HOH HOH . D 4 HOH A 29 529 53 HOH HOH . D 4 HOH A 30 530 124 HOH HOH . D 4 HOH A 31 531 18 HOH HOH . D 4 HOH A 32 532 188 HOH HOH . D 4 HOH A 33 533 14 HOH HOH . D 4 HOH A 34 534 128 HOH HOH . D 4 HOH A 35 535 115 HOH HOH . D 4 HOH A 36 536 79 HOH HOH . D 4 HOH A 37 537 89 HOH HOH . D 4 HOH A 38 538 64 HOH HOH . D 4 HOH A 39 539 152 HOH HOH . D 4 HOH A 40 540 20 HOH HOH . D 4 HOH A 41 541 101 HOH HOH . D 4 HOH A 42 542 30 HOH HOH . D 4 HOH A 43 543 4 HOH HOH . D 4 HOH A 44 544 74 HOH HOH . D 4 HOH A 45 545 106 HOH HOH . D 4 HOH A 46 546 25 HOH HOH . D 4 HOH A 47 547 56 HOH HOH . D 4 HOH A 48 548 60 HOH HOH . D 4 HOH A 49 549 26 HOH HOH . D 4 HOH A 50 550 27 HOH HOH . D 4 HOH A 51 551 24 HOH HOH . D 4 HOH A 52 552 132 HOH HOH . D 4 HOH A 53 553 119 HOH HOH . D 4 HOH A 54 554 23 HOH HOH . D 4 HOH A 55 555 97 HOH HOH . D 4 HOH A 56 556 43 HOH HOH . D 4 HOH A 57 557 94 HOH HOH . D 4 HOH A 58 558 160 HOH HOH . D 4 HOH A 59 559 84 HOH HOH . D 4 HOH A 60 560 3 HOH HOH . D 4 HOH A 61 561 7 HOH HOH . D 4 HOH A 62 562 6 HOH HOH . D 4 HOH A 63 563 85 HOH HOH . D 4 HOH A 64 564 38 HOH HOH . D 4 HOH A 65 565 67 HOH HOH . D 4 HOH A 66 566 16 HOH HOH . D 4 HOH A 67 567 213 HOH HOH . D 4 HOH A 68 568 71 HOH HOH . D 4 HOH A 69 569 147 HOH HOH . D 4 HOH A 70 570 91 HOH HOH . D 4 HOH A 71 571 99 HOH HOH . D 4 HOH A 72 572 144 HOH HOH . D 4 HOH A 73 573 167 HOH HOH . D 4 HOH A 74 574 55 HOH HOH . D 4 HOH A 75 575 8 HOH HOH . D 4 HOH A 76 576 87 HOH HOH . D 4 HOH A 77 577 37 HOH HOH . D 4 HOH A 78 578 49 HOH HOH . D 4 HOH A 79 579 201 HOH HOH . D 4 HOH A 80 580 141 HOH HOH . D 4 HOH A 81 581 1 HOH HOH . D 4 HOH A 82 582 19 HOH HOH . D 4 HOH A 83 583 96 HOH HOH . D 4 HOH A 84 584 10 HOH HOH . D 4 HOH A 85 585 39 HOH HOH . D 4 HOH A 86 586 17 HOH HOH . D 4 HOH A 87 587 34 HOH HOH . D 4 HOH A 88 588 117 HOH HOH . D 4 HOH A 89 589 83 HOH HOH . D 4 HOH A 90 590 31 HOH HOH . D 4 HOH A 91 591 105 HOH HOH . D 4 HOH A 92 592 162 HOH HOH . D 4 HOH A 93 593 198 HOH HOH . D 4 HOH A 94 594 62 HOH HOH . D 4 HOH A 95 595 86 HOH HOH . D 4 HOH A 96 596 54 HOH HOH . D 4 HOH A 97 597 205 HOH HOH . D 4 HOH A 98 598 190 HOH HOH . D 4 HOH A 99 599 69 HOH HOH . D 4 HOH A 100 600 2 HOH HOH . D 4 HOH A 101 601 234 HOH HOH . D 4 HOH A 102 602 184 HOH HOH . D 4 HOH A 103 603 92 HOH HOH . D 4 HOH A 104 604 63 HOH HOH . D 4 HOH A 105 605 239 HOH HOH . D 4 HOH A 106 606 75 HOH HOH . D 4 HOH A 107 607 156 HOH HOH . D 4 HOH A 108 608 76 HOH HOH . D 4 HOH A 109 609 130 HOH HOH . D 4 HOH A 110 610 78 HOH HOH . D 4 HOH A 111 611 40 HOH HOH . D 4 HOH A 112 612 227 HOH HOH . D 4 HOH A 113 613 42 HOH HOH . D 4 HOH A 114 614 206 HOH HOH . D 4 HOH A 115 615 161 HOH HOH . D 4 HOH A 116 616 50 HOH HOH . D 4 HOH A 117 617 12 HOH HOH . D 4 HOH A 118 618 21 HOH HOH . D 4 HOH A 119 619 15 HOH HOH . D 4 HOH A 120 620 217 HOH HOH . D 4 HOH A 121 621 82 HOH HOH . D 4 HOH A 122 622 9 HOH HOH . D 4 HOH A 123 623 135 HOH HOH . D 4 HOH A 124 624 33 HOH HOH . D 4 HOH A 125 625 137 HOH HOH . D 4 HOH A 126 626 116 HOH HOH . D 4 HOH A 127 627 240 HOH HOH . D 4 HOH A 128 628 45 HOH HOH . D 4 HOH A 129 629 154 HOH HOH . D 4 HOH A 130 630 22 HOH HOH . D 4 HOH A 131 631 103 HOH HOH . D 4 HOH A 132 632 223 HOH HOH . D 4 HOH A 133 633 70 HOH HOH . D 4 HOH A 134 634 59 HOH HOH . D 4 HOH A 135 635 215 HOH HOH . D 4 HOH A 136 636 182 HOH HOH . D 4 HOH A 137 637 68 HOH HOH . D 4 HOH A 138 638 138 HOH HOH . D 4 HOH A 139 639 44 HOH HOH . D 4 HOH A 140 640 165 HOH HOH . D 4 HOH A 141 641 36 HOH HOH . D 4 HOH A 142 642 153 HOH HOH . D 4 HOH A 143 643 226 HOH HOH . D 4 HOH A 144 644 48 HOH HOH . D 4 HOH A 145 645 61 HOH HOH . D 4 HOH A 146 646 41 HOH HOH . D 4 HOH A 147 647 46 HOH HOH . D 4 HOH A 148 648 174 HOH HOH . D 4 HOH A 149 649 229 HOH HOH . D 4 HOH A 150 650 109 HOH HOH . D 4 HOH A 151 651 186 HOH HOH . D 4 HOH A 152 652 236 HOH HOH . D 4 HOH A 153 653 93 HOH HOH . D 4 HOH A 154 654 28 HOH HOH . D 4 HOH A 155 655 231 HOH HOH . D 4 HOH A 156 656 81 HOH HOH . D 4 HOH A 157 657 129 HOH HOH . D 4 HOH A 158 658 95 HOH HOH . D 4 HOH A 159 659 47 HOH HOH . D 4 HOH A 160 660 123 HOH HOH . D 4 HOH A 161 661 35 HOH HOH . D 4 HOH A 162 662 230 HOH HOH . D 4 HOH A 163 663 208 HOH HOH . D 4 HOH A 164 664 127 HOH HOH . D 4 HOH A 165 665 219 HOH HOH . D 4 HOH A 166 666 237 HOH HOH . D 4 HOH A 167 667 151 HOH HOH . D 4 HOH A 168 668 185 HOH HOH . D 4 HOH A 169 669 126 HOH HOH . D 4 HOH A 170 670 157 HOH HOH . D 4 HOH A 171 671 178 HOH HOH . D 4 HOH A 172 672 179 HOH HOH . D 4 HOH A 173 673 207 HOH HOH . D 4 HOH A 174 674 228 HOH HOH . D 4 HOH A 175 675 177 HOH HOH . D 4 HOH A 176 676 202 HOH HOH . D 4 HOH A 177 677 72 HOH HOH . D 4 HOH A 178 678 194 HOH HOH . D 4 HOH A 179 679 104 HOH HOH . D 4 HOH A 180 680 102 HOH HOH . D 4 HOH A 181 681 113 HOH HOH . D 4 HOH A 182 682 133 HOH HOH . D 4 HOH A 183 683 197 HOH HOH . D 4 HOH A 184 684 164 HOH HOH . D 4 HOH A 185 685 163 HOH HOH . D 4 HOH A 186 686 203 HOH HOH . D 4 HOH A 187 687 200 HOH HOH . D 4 HOH A 188 688 170 HOH HOH . D 4 HOH A 189 689 211 HOH HOH . D 4 HOH A 190 690 172 HOH HOH . D 4 HOH A 191 691 191 HOH HOH . D 4 HOH A 192 692 235 HOH HOH . D 4 HOH A 193 693 166 HOH HOH . D 4 HOH A 194 694 222 HOH HOH . D 4 HOH A 195 695 176 HOH HOH . D 4 HOH A 196 696 150 HOH HOH . D 4 HOH A 197 697 131 HOH HOH . D 4 HOH A 198 698 65 HOH HOH . D 4 HOH A 199 699 110 HOH HOH . D 4 HOH A 200 700 214 HOH HOH . D 4 HOH A 201 701 29 HOH HOH . D 4 HOH A 202 702 146 HOH HOH . D 4 HOH A 203 703 221 HOH HOH . D 4 HOH A 204 704 180 HOH HOH . D 4 HOH A 205 705 136 HOH HOH . D 4 HOH A 206 706 181 HOH HOH . D 4 HOH A 207 707 98 HOH HOH . D 4 HOH A 208 708 173 HOH HOH . D 4 HOH A 209 709 195 HOH HOH . D 4 HOH A 210 710 140 HOH HOH . D 4 HOH A 211 711 187 HOH HOH . D 4 HOH A 212 712 210 HOH HOH . D 4 HOH A 213 713 66 HOH HOH . D 4 HOH A 214 714 114 HOH HOH . D 4 HOH A 215 715 155 HOH HOH . D 4 HOH A 216 716 139 HOH HOH . D 4 HOH A 217 717 224 HOH HOH . D 4 HOH A 218 718 88 HOH HOH . D 4 HOH A 219 719 204 HOH HOH . D 4 HOH A 220 720 134 HOH HOH . D 4 HOH A 221 721 171 HOH HOH . D 4 HOH A 222 722 225 HOH HOH . D 4 HOH A 223 723 77 HOH HOH . D 4 HOH A 224 724 57 HOH HOH . D 4 HOH A 225 725 192 HOH HOH . D 4 HOH A 226 726 145 HOH HOH . D 4 HOH A 227 727 111 HOH HOH . D 4 HOH A 228 728 196 HOH HOH . D 4 HOH A 229 729 209 HOH HOH . D 4 HOH A 230 730 233 HOH HOH . D 4 HOH A 231 731 58 HOH HOH . D 4 HOH A 232 732 232 HOH HOH . D 4 HOH A 233 733 121 HOH HOH . D 4 HOH A 234 734 159 HOH HOH . D 4 HOH A 235 735 118 HOH HOH . D 4 HOH A 236 736 216 HOH HOH . D 4 HOH A 237 737 175 HOH HOH . D 4 HOH A 238 738 218 HOH HOH . D 4 HOH A 239 739 193 HOH HOH . D 4 HOH A 240 740 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -22.042 41.516 -23.067 1 78.66 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -21.411 40.467 -22.171 1 72.85 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -21.379 41.466 -24.427 1 68.69 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -21.838 42.865 -22.444 1 49.05 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -23.499 41.263 -23.193 1 82.21 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -22.407 39.54 -21.768 1 92.57 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -21.513 40.156 -24.954 1 46.42 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -22.388 42.777 -21.17 1 47.28 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -20.982 40.95 -21.291 1 87.43 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -20.624 39.945 -22.72 1 87.43 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -20.321 41.717 -24.326 1 82.42 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -21.861 42.184 -25.094 1 82.42 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -20.776 43.11 -22.366 1 58.86 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -22.351 43.645 -23.009 1 58.86 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -23.934 41.285 -22.257 1 98.66 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -23.924 41.992 -23.788 1 98.66 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -23.651 40.335 -23.621 1 98.66 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -22.01 38.868 -21.197 1 111.08 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -21.092 40.114 -25.823 1 55.71 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -22.745 41.889 -21.034 1 56.73 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #