data_5QG5 # _model_server_result.job_id R9yWXJeuQ2d3Fd6W8ReHjw _model_server_result.datetime_utc '2024-11-07 18:36:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QG5 # _exptl.entry_id 5QG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QG5 _cell.length_a 89.105 _cell.length_b 89.105 _cell.length_c 106.075 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 348 n n C C2 TRS sing 349 n n C C3 TRS sing 350 n n C N TRS sing 351 n n C1 O1 TRS sing 352 n n C1 H11 TRS sing 353 n n C1 H12 TRS sing 354 n n C2 O2 TRS sing 355 n n C2 H21 TRS sing 356 n n C2 H22 TRS sing 357 n n C3 O3 TRS sing 358 n n C3 H31 TRS sing 359 n n C3 H32 TRS sing 360 n n N HN1 TRS sing 361 n n N HN2 TRS sing 362 n n N HN3 TRS sing 363 n n O1 HO1 TRS sing 364 n n O2 HO2 TRS sing 365 n n O3 HO3 TRS sing 366 n n # _atom_sites.entry_id 5QG5 _atom_sites.fract_transf_matrix[1][1] 0.011223 _atom_sites.fract_transf_matrix[1][2] 0.006479 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0R0 A 1 401 1 0R0 LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 65 HOH HOH . D 4 HOH A 2 502 101 HOH HOH . D 4 HOH A 3 503 85 HOH HOH . D 4 HOH A 4 504 94 HOH HOH . D 4 HOH A 5 505 76 HOH HOH . D 4 HOH A 6 506 47 HOH HOH . D 4 HOH A 7 507 46 HOH HOH . D 4 HOH A 8 508 95 HOH HOH . D 4 HOH A 9 509 11 HOH HOH . D 4 HOH A 10 510 30 HOH HOH . D 4 HOH A 11 511 66 HOH HOH . D 4 HOH A 12 512 58 HOH HOH . D 4 HOH A 13 513 14 HOH HOH . D 4 HOH A 14 514 19 HOH HOH . D 4 HOH A 15 515 9 HOH HOH . D 4 HOH A 16 516 74 HOH HOH . D 4 HOH A 17 517 28 HOH HOH . D 4 HOH A 18 518 68 HOH HOH . D 4 HOH A 19 519 72 HOH HOH . D 4 HOH A 20 520 23 HOH HOH . D 4 HOH A 21 521 104 HOH HOH . D 4 HOH A 22 522 55 HOH HOH . D 4 HOH A 23 523 78 HOH HOH . D 4 HOH A 24 524 48 HOH HOH . D 4 HOH A 25 525 73 HOH HOH . D 4 HOH A 26 526 70 HOH HOH . D 4 HOH A 27 527 53 HOH HOH . D 4 HOH A 28 528 25 HOH HOH . D 4 HOH A 29 529 34 HOH HOH . D 4 HOH A 30 530 51 HOH HOH . D 4 HOH A 31 531 26 HOH HOH . D 4 HOH A 32 532 117 HOH HOH . D 4 HOH A 33 533 17 HOH HOH . D 4 HOH A 34 534 1 HOH HOH . D 4 HOH A 35 535 67 HOH HOH . D 4 HOH A 36 536 64 HOH HOH . D 4 HOH A 37 537 79 HOH HOH . D 4 HOH A 38 538 22 HOH HOH . D 4 HOH A 39 539 107 HOH HOH . D 4 HOH A 40 540 60 HOH HOH . D 4 HOH A 41 541 113 HOH HOH . D 4 HOH A 42 542 4 HOH HOH . D 4 HOH A 43 543 93 HOH HOH . D 4 HOH A 44 544 90 HOH HOH . D 4 HOH A 45 545 13 HOH HOH . D 4 HOH A 46 546 21 HOH HOH . D 4 HOH A 47 547 3 HOH HOH . D 4 HOH A 48 548 35 HOH HOH . D 4 HOH A 49 549 29 HOH HOH . D 4 HOH A 50 550 110 HOH HOH . D 4 HOH A 51 551 16 HOH HOH . D 4 HOH A 52 552 105 HOH HOH . D 4 HOH A 53 553 36 HOH HOH . D 4 HOH A 54 554 12 HOH HOH . D 4 HOH A 55 555 88 HOH HOH . D 4 HOH A 56 556 109 HOH HOH . D 4 HOH A 57 557 7 HOH HOH . D 4 HOH A 58 558 42 HOH HOH . D 4 HOH A 59 559 106 HOH HOH . D 4 HOH A 60 560 116 HOH HOH . D 4 HOH A 61 561 37 HOH HOH . D 4 HOH A 62 562 102 HOH HOH . D 4 HOH A 63 563 6 HOH HOH . D 4 HOH A 64 564 8 HOH HOH . D 4 HOH A 65 565 5 HOH HOH . D 4 HOH A 66 566 49 HOH HOH . D 4 HOH A 67 567 10 HOH HOH . D 4 HOH A 68 568 75 HOH HOH . D 4 HOH A 69 569 43 HOH HOH . D 4 HOH A 70 570 18 HOH HOH . D 4 HOH A 71 571 69 HOH HOH . D 4 HOH A 72 572 61 HOH HOH . D 4 HOH A 73 573 80 HOH HOH . D 4 HOH A 74 574 2 HOH HOH . D 4 HOH A 75 575 96 HOH HOH . D 4 HOH A 76 576 31 HOH HOH . D 4 HOH A 77 577 20 HOH HOH . D 4 HOH A 78 578 33 HOH HOH . D 4 HOH A 79 579 118 HOH HOH . D 4 HOH A 80 580 98 HOH HOH . D 4 HOH A 81 581 63 HOH HOH . D 4 HOH A 82 582 123 HOH HOH . D 4 HOH A 83 583 45 HOH HOH . D 4 HOH A 84 584 38 HOH HOH . D 4 HOH A 85 585 24 HOH HOH . D 4 HOH A 86 586 57 HOH HOH . D 4 HOH A 87 587 126 HOH HOH . D 4 HOH A 88 588 81 HOH HOH . D 4 HOH A 89 589 84 HOH HOH . D 4 HOH A 90 590 108 HOH HOH . D 4 HOH A 91 591 50 HOH HOH . D 4 HOH A 92 592 15 HOH HOH . D 4 HOH A 93 593 39 HOH HOH . D 4 HOH A 94 594 62 HOH HOH . D 4 HOH A 95 595 99 HOH HOH . D 4 HOH A 96 596 40 HOH HOH . D 4 HOH A 97 597 114 HOH HOH . D 4 HOH A 98 598 83 HOH HOH . D 4 HOH A 99 599 119 HOH HOH . D 4 HOH A 100 600 100 HOH HOH . D 4 HOH A 101 601 71 HOH HOH . D 4 HOH A 102 602 41 HOH HOH . D 4 HOH A 103 603 124 HOH HOH . D 4 HOH A 104 604 103 HOH HOH . D 4 HOH A 105 605 86 HOH HOH . D 4 HOH A 106 606 44 HOH HOH . D 4 HOH A 107 607 112 HOH HOH . D 4 HOH A 108 608 32 HOH HOH . D 4 HOH A 109 609 89 HOH HOH . D 4 HOH A 110 610 97 HOH HOH . D 4 HOH A 111 611 125 HOH HOH . D 4 HOH A 112 612 82 HOH HOH . D 4 HOH A 113 613 91 HOH HOH . D 4 HOH A 114 614 77 HOH HOH . D 4 HOH A 115 615 120 HOH HOH . D 4 HOH A 116 616 92 HOH HOH . D 4 HOH A 117 617 59 HOH HOH . D 4 HOH A 118 618 121 HOH HOH . D 4 HOH A 119 619 87 HOH HOH . D 4 HOH A 120 620 111 HOH HOH . D 4 HOH A 121 621 54 HOH HOH . D 4 HOH A 122 622 27 HOH HOH . D 4 HOH A 123 623 56 HOH HOH . D 4 HOH A 124 624 115 HOH HOH . D 4 HOH A 125 625 52 HOH HOH . D 4 HOH A 126 626 127 HOH HOH . D 4 HOH A 127 627 122 HOH HOH . D 4 HOH A 128 628 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -90.057 79.453 101.386 1 54.15 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -88.835 79.402 102.312 1 67.02 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -89.646 79.945 100.025 1 75.26 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -91.135 80.346 101.944 1 95.36 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -90.609 78.097 101.252 1 85.2 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -88.57 78.041 102.624 1 95.32 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -88.696 79.025 99.502 1 136.91 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -91.5 79.779 103.156 1 47.93 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -89.047 79.961 103.225 1 80.42 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -87.975 79.845 101.805 1 80.42 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -89.202 80.938 100.116 1 90.31 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -90.523 79.995 99.376 1 90.31 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -90.764 81.359 102.113 1 114.43 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -92.003 80.382 101.283 1 114.43 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -90.909 77.754 102.179 1 102.24 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -91.42 78.117 100.613 1 102.24 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -89.885 77.467 100.87 1 102.24 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -87.801 77.988 103.208 1 114.38 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -88.413 79.317 98.625 1 164.29 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -90.975 78.982 103.31 1 57.52 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #